data_3WC8
#
_model_server_result.job_id            TftqklHVNdI3uNR57JNCPQ 
_model_server_result.datetime_utc      '2024-12-02 04:58:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3wc8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    3WC8 
#
_exptl.entry_id    3WC8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME C' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3WC8 
_cell.length_a            60.815 
_cell.length_b            93.476 
_cell.length_c            36.241 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3WC8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 14 A CYS 14 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.695 ? 
covale ? covale2 A SG CYS 17 A CYS 17 1_555 B CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.745 ? 
metalc ? metalc1 A NE2 HIS 18 A HIS 18 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? 
metalc ? metalc2 B FE HEC . A HEC 201 1_555 H O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEC sing 129 n n 
FE NB HEC sing 130 n n 
FE NC HEC sing 131 n n 
FE ND HEC sing 132 n n 
CHA C1A HEC doub 133 n n 
CHA C4D HEC sing 134 n n 
CHA HHA HEC sing 135 n n 
CHB C4A HEC doub 136 n n 
CHB C1B HEC sing 137 n n 
CHB HHB HEC sing 138 n n 
CHC C4B HEC doub 139 n n 
CHC C1C HEC sing 140 n n 
CHC HHC HEC sing 141 n n 
CHD C4C HEC doub 142 n n 
CHD C1D HEC sing 143 n n 
CHD HHD HEC sing 144 n n 
NA C1A HEC sing 145 n y 
NA C4A HEC sing 146 n y 
C1A C2A HEC sing 147 n y 
C2A C3A HEC doub 148 n y 
C2A CAA HEC sing 149 n n 
C3A C4A HEC sing 150 n y 
C3A CMA HEC sing 151 n n 
CMA HMA1 HEC sing 152 n n 
CMA HMA2 HEC sing 153 n n 
CMA HMA3 HEC sing 154 n n 
CAA CBA HEC sing 155 n n 
CAA HAA1 HEC sing 156 n n 
CAA HAA2 HEC sing 157 n n 
CBA CGA HEC sing 158 n n 
CBA HBA1 HEC sing 159 n n 
CBA HBA2 HEC sing 160 n n 
CGA O1A HEC doub 161 n n 
CGA O2A HEC sing 162 n n 
O2A H2A HEC sing 163 n n 
NB C1B HEC sing 164 n y 
NB C4B HEC sing 165 n y 
C1B C2B HEC doub 166 n y 
C2B C3B HEC sing 167 n y 
C2B CMB HEC sing 168 n n 
C3B C4B HEC sing 169 n y 
C3B CAB HEC doub 170 e n 
CMB HMB1 HEC sing 171 n n 
CMB HMB2 HEC sing 172 n n 
CMB HMB3 HEC sing 173 n n 
CAB CBB HEC sing 174 n n 
CAB HAB HEC sing 175 n n 
CBB HBB1 HEC sing 176 n n 
CBB HBB2 HEC sing 177 n n 
CBB HBB3 HEC sing 178 n n 
NC C1C HEC sing 179 n y 
NC C4C HEC sing 180 n y 
C1C C2C HEC doub 181 n y 
C2C C3C HEC sing 182 n y 
C2C CMC HEC sing 183 n n 
C3C C4C HEC sing 184 n y 
C3C CAC HEC doub 185 e n 
CMC HMC1 HEC sing 186 n n 
CMC HMC2 HEC sing 187 n n 
CMC HMC3 HEC sing 188 n n 
CAC CBC HEC sing 189 n n 
CAC HAC HEC sing 190 n n 
CBC HBC1 HEC sing 191 n n 
CBC HBC2 HEC sing 192 n n 
CBC HBC3 HEC sing 193 n n 
ND C1D HEC sing 194 n y 
ND C4D HEC sing 195 n y 
C1D C2D HEC doub 196 n y 
C2D C3D HEC sing 197 n y 
C2D CMD HEC sing 198 n n 
C3D C4D HEC doub 199 n y 
C3D CAD HEC sing 200 n n 
CMD HMD1 HEC sing 201 n n 
CMD HMD2 HEC sing 202 n n 
CMD HMD3 HEC sing 203 n n 
CAD CBD HEC sing 204 n n 
CAD HAD1 HEC sing 205 n n 
CAD HAD2 HEC sing 206 n n 
CBD CGD HEC sing 207 n n 
CBD HBD1 HEC sing 208 n n 
CBD HBD2 HEC sing 209 n n 
CGD O1D HEC doub 210 n n 
CGD O2D HEC sing 211 n n 
O2D H2D HEC sing 212 n n 
#
_atom_sites.entry_id                     3WC8 
_atom_sites.fract_transf_matrix[1][1]    0.016443 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010698 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.027593 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEC A 1 201 105 HEC HEM . 
C 3 PO4 A 1 202 1 PO4 PO4 . 
D 4 PG4 A 1 203 1 PG4 PG4 . 
E 5 PEG A 1 204 1 PEG PEG . 
F 5 PEG A 1 205 1 PEG PEG . 
G 5 PEG A 1 206 1 PEG PEG . 
H 6 HOH A 1 301 1 HOH HOH . 
H 6 HOH A 2 302 2 HOH HOH . 
H 6 HOH A 3 303 3 HOH HOH . 
H 6 HOH A 4 304 4 HOH HOH . 
H 6 HOH A 5 305 5 HOH HOH . 
H 6 HOH A 6 306 6 HOH HOH . 
H 6 HOH A 7 307 7 HOH HOH . 
H 6 HOH A 8 308 8 HOH HOH . 
H 6 HOH A 9 309 9 HOH HOH . 
H 6 HOH A 10 310 10 HOH HOH . 
H 6 HOH A 11 311 11 HOH HOH . 
H 6 HOH A 12 312 12 HOH HOH . 
H 6 HOH A 13 313 13 HOH HOH . 
H 6 HOH A 14 314 14 HOH HOH . 
H 6 HOH A 15 315 15 HOH HOH . 
H 6 HOH A 16 316 16 HOH HOH . 
H 6 HOH A 17 317 17 HOH HOH . 
H 6 HOH A 18 318 18 HOH HOH . 
H 6 HOH A 19 319 19 HOH HOH . 
H 6 HOH A 20 320 21 HOH HOH . 
H 6 HOH A 21 321 25 HOH HOH . 
H 6 HOH A 22 322 26 HOH HOH . 
H 6 HOH A 23 323 27 HOH HOH . 
H 6 HOH A 24 324 28 HOH HOH . 
H 6 HOH A 25 325 30 HOH HOH . 
H 6 HOH A 26 326 32 HOH HOH . 
H 6 HOH A 27 327 33 HOH HOH . 
H 6 HOH A 28 328 34 HOH HOH . 
H 6 HOH A 29 329 35 HOH HOH . 
H 6 HOH A 30 330 36 HOH HOH . 
H 6 HOH A 31 331 38 HOH HOH . 
H 6 HOH A 32 332 39 HOH HOH . 
H 6 HOH A 33 333 40 HOH HOH . 
H 6 HOH A 34 334 41 HOH HOH . 
H 6 HOH A 35 335 42 HOH HOH . 
H 6 HOH A 36 336 43 HOH HOH . 
H 6 HOH A 37 337 44 HOH HOH . 
H 6 HOH A 38 338 45 HOH HOH . 
H 6 HOH A 39 339 46 HOH HOH . 
H 6 HOH A 40 340 48 HOH HOH . 
H 6 HOH A 41 341 50 HOH HOH . 
H 6 HOH A 42 342 51 HOH HOH . 
H 6 HOH A 43 343 52 HOH HOH . 
H 6 HOH A 44 344 53 HOH HOH . 
H 6 HOH A 45 345 55 HOH HOH . 
H 6 HOH A 46 346 56 HOH HOH . 
H 6 HOH A 47 347 57 HOH HOH . 
H 6 HOH A 48 348 58 HOH HOH . 
H 6 HOH A 49 349 59 HOH HOH . 
H 6 HOH A 50 350 60 HOH HOH . 
H 6 HOH A 51 351 61 HOH HOH . 
H 6 HOH A 52 352 62 HOH HOH . 
H 6 HOH A 53 353 64 HOH HOH . 
H 6 HOH A 54 354 67 HOH HOH . 
H 6 HOH A 55 355 69 HOH HOH . 
H 6 HOH A 56 356 70 HOH HOH . 
H 6 HOH A 57 357 71 HOH HOH . 
H 6 HOH A 58 358 73 HOH HOH . 
H 6 HOH A 59 359 74 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEC . . . B 2 -14.971 -8.646 -3.25 1 11.06 ? FE HEC 201 A 1 
HETATM 2 C CHA HEC . . . B 2 -17.391 -10.685 -1.887 1 8.32 ? CHA HEC 201 A 1 
HETATM 3 C CHB HEC . . . B 2 -14.493 -10.828 -5.817 1 9.39 ? CHB HEC 201 A 1 
HETATM 4 C CHC HEC . . . B 2 -13.104 -6.232 -4.836 1 9.23 ? CHC HEC 201 A 1 
HETATM 5 C CHD HEC . . . B 2 -14.86 -6.851 -0.371 1 12.48 ? CHD HEC 201 A 1 
HETATM 6 N NA HEC . . . B 2 -15.789 -10.365 -3.744 1 9.52 ? NA HEC 201 A 1 
HETATM 7 C C1A HEC . . . B 2 -16.798 -11.067 -3.081 1 11.84 ? C1A HEC 201 A 1 
HETATM 8 C C2A HEC . . . B 2 -17.111 -12.29 -3.825 1 10.76 ? C2A HEC 201 A 1 
HETATM 9 C C3A HEC . . . B 2 -16.347 -12.316 -4.907 1 12.66 ? C3A HEC 201 A 1 
HETATM 10 C C4A HEC . . . B 2 -15.47 -11.154 -4.854 1 12.92 ? C4A HEC 201 A 1 
HETATM 11 C CMA HEC . . . B 2 -16.248 -13.417 -6.045 1 11.6 ? CMA HEC 201 A 1 
HETATM 12 C CAA HEC . . . B 2 -18.165 -13.322 -3.43 1 9.96 ? CAA HEC 201 A 1 
HETATM 13 C CBA HEC . . . B 2 -17.446 -14.298 -2.517 1 12.1 ? CBA HEC 201 A 1 
HETATM 14 C CGA HEC . . . B 2 -18.309 -15.483 -2.098 1 13.59 ? CGA HEC 201 A 1 
HETATM 15 O O1A HEC . . . B 2 -17.772 -16.304 -1.345 1 13.5 ? O1A HEC 201 A 1 
HETATM 16 O O2A HEC . . . B 2 -19.51 -15.623 -2.458 1 13.37 ? O2A HEC 201 A 1 
HETATM 17 N NB HEC . . . B 2 -13.972 -8.56 -5.016 1 10 ? NB HEC 201 A 1 
HETATM 18 C C1B HEC . . . B 2 -13.837 -9.619 -5.865 1 11.53 ? C1B HEC 201 A 1 
HETATM 19 C C2B HEC . . . B 2 -12.956 -9.2 -6.932 1 10.03 ? C2B HEC 201 A 1 
HETATM 20 C C3B HEC . . . B 2 -12.53 -7.934 -6.706 1 10.25 ? C3B HEC 201 A 1 
HETATM 21 C C4B HEC . . . B 2 -13.182 -7.484 -5.488 1 8.54 ? C4B HEC 201 A 1 
HETATM 22 C CMB HEC . . . B 2 -12.483 -10.176 -8.057 1 11.82 ? CMB HEC 201 A 1 
HETATM 23 C CAB HEC . . . B 2 -11.603 -7.077 -7.596 1 10.99 ? CAB HEC 201 A 1 
HETATM 24 C CBB HEC . . . B 2 -12.297 -6.64 -8.746 1 12.07 ? CBB HEC 201 A 1 
HETATM 25 N NC HEC . . . B 2 -14.18 -6.907 -2.735 1 11.51 ? NC HEC 201 A 1 
HETATM 26 C C1C HEC . . . B 2 -13.427 -6.037 -3.498 1 9.65 ? C1C HEC 201 A 1 
HETATM 27 C C2C HEC . . . B 2 -13.004 -4.875 -2.679 1 10.12 ? C2C HEC 201 A 1 
HETATM 28 C C3C HEC . . . B 2 -13.469 -5.04 -1.428 1 9.57 ? C3C HEC 201 A 1 
HETATM 29 C C4C HEC . . . B 2 -14.233 -6.328 -1.468 1 9.76 ? C4C HEC 201 A 1 
HETATM 30 C CMC HEC . . . B 2 -12.106 -3.815 -3.344 1 12.04 ? CMC HEC 201 A 1 
HETATM 31 C CAC HEC . . . B 2 -13.143 -4.133 -0.213 1 11.73 ? CAC HEC 201 A 1 
HETATM 32 C CBC HEC . . . B 2 -13.465 -2.759 -0.426 1 13.88 ? CBC HEC 201 A 1 
HETATM 33 N ND HEC . . . B 2 -15.957 -8.782 -1.464 1 11.19 ? ND HEC 201 A 1 
HETATM 34 C C1D HEC . . . B 2 -15.748 -7.895 -0.393 1 13.52 ? C1D HEC 201 A 1 
HETATM 35 C C2D HEC . . . B 2 -16.558 -8.243 0.719 1 11.79 ? C2D HEC 201 A 1 
HETATM 36 C C3D HEC . . . B 2 -17.352 -9.425 0.275 1 9.64 ? C3D HEC 201 A 1 
HETATM 37 C C4D HEC . . . B 2 -16.909 -9.678 -1.096 1 12.39 ? C4D HEC 201 A 1 
HETATM 38 C CMD HEC . . . B 2 -16.633 -7.549 2.086 1 11.07 ? CMD HEC 201 A 1 
HETATM 39 C CAD HEC . . . B 2 -18.47 -10.215 0.983 1 11.19 ? CAD HEC 201 A 1 
HETATM 40 C CBD HEC . . . B 2 -19.689 -9.284 0.713 1 11.8 ? CBD HEC 201 A 1 
HETATM 41 C CGD HEC . . . B 2 -20.976 -9.652 1.44 1 13.99 ? CGD HEC 201 A 1 
HETATM 42 O O1D HEC . . . B 2 -20.907 -10.507 2.32 1 13.78 ? O1D HEC 201 A 1 
HETATM 43 O O2D HEC . . . B 2 -22.079 -9.105 1.061 1 14.11 ? O2D HEC 201 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#