data_3WC8 # _model_server_result.job_id QIIpNvBrul7WzgVQtVN85A _model_server_result.datetime_utc '2024-12-02 04:38:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wc8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 3WC8 # _exptl.entry_id 3WC8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WC8 _cell.length_a 60.815 _cell.length_b 93.476 _cell.length_c 36.241 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WC8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 14 A CYS 14 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.695 ? covale ? covale2 A SG CYS 17 A CYS 17 1_555 B CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.745 ? metalc ? metalc1 A NE2 HIS 18 A HIS 18 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc2 B FE HEC . A HEC 201 1_555 H O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 337 n n O1 HO1 PG4 sing 338 n n C1 C2 PG4 sing 339 n n C1 H11 PG4 sing 340 n n C1 H12 PG4 sing 341 n n C2 O2 PG4 sing 342 n n C2 H21 PG4 sing 343 n n C2 H22 PG4 sing 344 n n O2 C3 PG4 sing 345 n n C3 C4 PG4 sing 346 n n C3 H31 PG4 sing 347 n n C3 H32 PG4 sing 348 n n C4 O3 PG4 sing 349 n n C4 H41 PG4 sing 350 n n C4 H42 PG4 sing 351 n n O3 C5 PG4 sing 352 n n C5 C6 PG4 sing 353 n n C5 H51 PG4 sing 354 n n C5 H52 PG4 sing 355 n n C6 O4 PG4 sing 356 n n C6 H61 PG4 sing 357 n n C6 H62 PG4 sing 358 n n O4 C7 PG4 sing 359 n n C7 C8 PG4 sing 360 n n C7 H71 PG4 sing 361 n n C7 H72 PG4 sing 362 n n C8 O5 PG4 sing 363 n n C8 H81 PG4 sing 364 n n C8 H82 PG4 sing 365 n n O5 HO5 PG4 sing 366 n n # _atom_sites.entry_id 3WC8 _atom_sites.fract_transf_matrix[1][1] 0.016443 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010698 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027593 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 201 105 HEC HEM . C 3 PO4 A 1 202 1 PO4 PO4 . D 4 PG4 A 1 203 1 PG4 PG4 . E 5 PEG A 1 204 1 PEG PEG . F 5 PEG A 1 205 1 PEG PEG . G 5 PEG A 1 206 1 PEG PEG . H 6 HOH A 1 301 1 HOH HOH . H 6 HOH A 2 302 2 HOH HOH . H 6 HOH A 3 303 3 HOH HOH . H 6 HOH A 4 304 4 HOH HOH . H 6 HOH A 5 305 5 HOH HOH . H 6 HOH A 6 306 6 HOH HOH . H 6 HOH A 7 307 7 HOH HOH . H 6 HOH A 8 308 8 HOH HOH . H 6 HOH A 9 309 9 HOH HOH . H 6 HOH A 10 310 10 HOH HOH . H 6 HOH A 11 311 11 HOH HOH . H 6 HOH A 12 312 12 HOH HOH . H 6 HOH A 13 313 13 HOH HOH . H 6 HOH A 14 314 14 HOH HOH . H 6 HOH A 15 315 15 HOH HOH . H 6 HOH A 16 316 16 HOH HOH . H 6 HOH A 17 317 17 HOH HOH . H 6 HOH A 18 318 18 HOH HOH . H 6 HOH A 19 319 19 HOH HOH . H 6 HOH A 20 320 21 HOH HOH . H 6 HOH A 21 321 25 HOH HOH . H 6 HOH A 22 322 26 HOH HOH . H 6 HOH A 23 323 27 HOH HOH . H 6 HOH A 24 324 28 HOH HOH . H 6 HOH A 25 325 30 HOH HOH . H 6 HOH A 26 326 32 HOH HOH . H 6 HOH A 27 327 33 HOH HOH . H 6 HOH A 28 328 34 HOH HOH . H 6 HOH A 29 329 35 HOH HOH . H 6 HOH A 30 330 36 HOH HOH . H 6 HOH A 31 331 38 HOH HOH . H 6 HOH A 32 332 39 HOH HOH . H 6 HOH A 33 333 40 HOH HOH . H 6 HOH A 34 334 41 HOH HOH . H 6 HOH A 35 335 42 HOH HOH . H 6 HOH A 36 336 43 HOH HOH . H 6 HOH A 37 337 44 HOH HOH . H 6 HOH A 38 338 45 HOH HOH . H 6 HOH A 39 339 46 HOH HOH . H 6 HOH A 40 340 48 HOH HOH . H 6 HOH A 41 341 50 HOH HOH . H 6 HOH A 42 342 51 HOH HOH . H 6 HOH A 43 343 52 HOH HOH . H 6 HOH A 44 344 53 HOH HOH . H 6 HOH A 45 345 55 HOH HOH . H 6 HOH A 46 346 56 HOH HOH . H 6 HOH A 47 347 57 HOH HOH . H 6 HOH A 48 348 58 HOH HOH . H 6 HOH A 49 349 59 HOH HOH . H 6 HOH A 50 350 60 HOH HOH . H 6 HOH A 51 351 61 HOH HOH . H 6 HOH A 52 352 62 HOH HOH . H 6 HOH A 53 353 64 HOH HOH . H 6 HOH A 54 354 67 HOH HOH . H 6 HOH A 55 355 69 HOH HOH . H 6 HOH A 56 356 70 HOH HOH . H 6 HOH A 57 357 71 HOH HOH . H 6 HOH A 58 358 73 HOH HOH . H 6 HOH A 59 359 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . D 4 -30.016 -15.35 -10.437 0.5 35.54 ? O1 PG4 203 A 1 HETATM 2 C C1 PG4 . . . D 4 -29.015 -14.921 -11.372 0.5 31.04 ? C1 PG4 203 A 1 HETATM 3 C C2 PG4 . . . D 4 -29.279 -13.5 -11.874 0.5 30.89 ? C2 PG4 203 A 1 HETATM 4 O O2 PG4 . . . D 4 -29.492 -12.551 -10.83 0.5 33.02 ? O2 PG4 203 A 1 HETATM 5 C C3 PG4 . . . D 4 -29.427 -11.146 -11.228 0.5 28.52 ? C3 PG4 203 A 1 HETATM 6 C C4 PG4 . . . D 4 -29.857 -10.164 -10.129 0.5 24.61 ? C4 PG4 203 A 1 HETATM 7 O O3 PG4 . . . D 4 -30.43 -10.876 -9.027 0.5 26.6 ? O3 PG4 203 A 1 HETATM 8 C C5 PG4 . . . D 4 -31.03 -10.2 -7.918 0.5 24.18 ? C5 PG4 203 A 1 HETATM 9 C C6 PG4 . . . D 4 -31.404 -11.202 -6.816 0.5 28.54 ? C6 PG4 203 A 1 HETATM 10 O O4 PG4 . . . D 4 -31.469 -12.591 -7.265 0.5 32.25 ? O4 PG4 203 A 1 HETATM 11 C C7 PG4 . . . D 4 -31.501 -13.575 -6.237 0.5 30.51 ? C7 PG4 203 A 1 HETATM 12 C C8 PG4 . . . D 4 -31.764 -14.983 -6.771 0.5 30.6 ? C8 PG4 203 A 1 HETATM 13 O O5 PG4 . . . D 4 -30.832 -15.336 -7.809 0.5 35.07 ? O5 PG4 203 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #