data_3WCG
#
_model_server_result.job_id            Z8JuOFRVXDSuidy7Gm7vqQ 
_model_server_result.datetime_utc      '2024-11-30 05:19:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3wcg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    3WCG 
#
_exptl.entry_id    3WCG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              466.489 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'hydrogen [(1R)-2-(3-pentadecyl-1H-imidazol-3-ium-1-yl)-1-phosphonoethyl]phosphonate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3WCG 
_cell.length_a            83.088 
_cell.length_b            128.974 
_cell.length_c            144.971 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3WCG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
PISA monomeric 1 software_defined_assembly 4 
PISA monomeric 1 software_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L 1 1 
A,E,I 2 1 
B,F,J 3 1 
C,G,K 4 1 
D,H,L 5 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C20 H40 N2 O6 P2' 
_chem_comp.formula_weight    466.489 
_chem_comp.id                BH3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'hydrogen [(1R)-2-(3-pentadecyl-1H-imidazol-3-ium-1-yl)-1-phosphonoethyl]phosphonate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CAK BH3 sing 70 n n 
CAK CAL BH3 sing 71 n n 
CAL CAM BH3 sing 72 n n 
CAM CAN BH3 sing 73 n n 
CAN CAO BH3 sing 74 n n 
CAO CAP BH3 sing 75 n n 
CAP CAQ BH3 sing 76 n n 
CAQ CAR BH3 sing 77 n n 
CAR CAS BH3 sing 78 n n 
CAS CAT BH3 sing 79 n n 
CAT CAU BH3 sing 80 n n 
CAU CAV BH3 sing 81 n n 
CAV CAW BH3 sing 82 n n 
OAE PBC BH3 doub 83 n n 
OAB PBC BH3 sing 84 n n 
OAD PBC BH3 sing 85 n n 
CAW CAX BH3 sing 86 n n 
PBC CAZ BH3 sing 87 n n 
CAX NBA BH3 sing 88 n n 
CAJ NBA BH3 doub 89 n y 
CAJ NBB BH3 sing 90 n y 
NBA CAH BH3 sing 91 n y 
CAZ CAY BH3 sing 92 n n 
CAZ PBD BH3 sing 93 n n 
OAC PBD BH3 doub 94 n n 
CAY NBB BH3 sing 95 n n 
NBB CAI BH3 sing 96 n y 
OAF PBD BH3 sing 97 n n 
PBD OAG BH3 sing 98 n n 
CAH CAI BH3 doub 99 n y 
OAD H1 BH3 sing 100 n n 
CAZ H3 BH3 sing 101 n n 
OAF H4 BH3 sing 102 n n 
OAG H5 BH3 sing 103 n n 
CAY H6 BH3 sing 104 n n 
CAY H7 BH3 sing 105 n n 
CAJ H8 BH3 sing 106 n n 
CAI H9 BH3 sing 107 n n 
CAH H10 BH3 sing 108 n n 
CAX H11 BH3 sing 109 n n 
CAX H12 BH3 sing 110 n n 
CAW H13 BH3 sing 111 n n 
CAW H14 BH3 sing 112 n n 
CAV H15 BH3 sing 113 n n 
CAV H16 BH3 sing 114 n n 
CAU H17 BH3 sing 115 n n 
CAU H18 BH3 sing 116 n n 
CAT H19 BH3 sing 117 n n 
CAT H20 BH3 sing 118 n n 
CAS H21 BH3 sing 119 n n 
CAS H22 BH3 sing 120 n n 
CAR H23 BH3 sing 121 n n 
CAR H24 BH3 sing 122 n n 
CAQ H25 BH3 sing 123 n n 
CAQ H26 BH3 sing 124 n n 
CAP H27 BH3 sing 125 n n 
CAP H28 BH3 sing 126 n n 
CAO H29 BH3 sing 127 n n 
CAO H30 BH3 sing 128 n n 
CAN H31 BH3 sing 129 n n 
CAN H32 BH3 sing 130 n n 
CAM H33 BH3 sing 131 n n 
CAM H34 BH3 sing 132 n n 
CAL H35 BH3 sing 133 n n 
CAL H36 BH3 sing 134 n n 
CAK H37 BH3 sing 135 n n 
CAK H38 BH3 sing 136 n n 
CAA H39 BH3 sing 137 n n 
CAA H40 BH3 sing 138 n n 
CAA H41 BH3 sing 139 n n 
#
_atom_sites.entry_id                     3WCG 
_atom_sites.fract_transf_matrix[1][1]    0.012035 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007754 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006898 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 BH3 A 1 401 1 BH3 BH3 . 
F 2 BH3 B 1 401 2 BH3 BH3 . 
G 2 BH3 C 1 401 3 BH3 BH3 . 
H 2 BH3 D 1 401 4 BH3 BH3 . 
I 3 HOH A 1 501 1 HOH WAT . 
I 3 HOH A 2 502 2 HOH WAT . 
I 3 HOH A 3 503 5 HOH WAT . 
I 3 HOH A 4 504 7 HOH WAT . 
I 3 HOH A 5 505 8 HOH WAT . 
I 3 HOH A 6 506 12 HOH WAT . 
I 3 HOH A 7 507 24 HOH WAT . 
I 3 HOH A 8 508 37 HOH WAT . 
I 3 HOH A 9 509 44 HOH WAT . 
I 3 HOH A 10 510 48 HOH WAT . 
I 3 HOH A 11 511 50 HOH WAT . 
I 3 HOH A 12 512 53 HOH WAT . 
I 3 HOH A 13 513 56 HOH WAT . 
I 3 HOH A 14 514 58 HOH WAT . 
I 3 HOH A 15 515 59 HOH WAT . 
I 3 HOH A 16 516 62 HOH WAT . 
I 3 HOH A 17 517 66 HOH WAT . 
I 3 HOH A 18 518 69 HOH WAT . 
I 3 HOH A 19 520 74 HOH WAT . 
I 3 HOH A 20 521 76 HOH WAT . 
I 3 HOH A 21 522 77 HOH WAT . 
I 3 HOH A 22 523 78 HOH WAT . 
I 3 HOH A 23 524 82 HOH WAT . 
I 3 HOH A 24 525 96 HOH WAT . 
I 3 HOH A 25 526 97 HOH WAT . 
I 3 HOH A 26 527 98 HOH WAT . 
I 3 HOH A 27 528 100 HOH WAT . 
I 3 HOH A 28 529 102 HOH WAT . 
I 3 HOH A 29 530 104 HOH WAT . 
I 3 HOH A 30 531 107 HOH WAT . 
I 3 HOH A 31 532 111 HOH WAT . 
I 3 HOH A 32 533 112 HOH WAT . 
I 3 HOH A 33 534 116 HOH WAT . 
I 3 HOH A 34 535 117 HOH WAT . 
I 3 HOH A 35 536 120 HOH WAT . 
I 3 HOH A 36 537 121 HOH WAT . 
I 3 HOH A 37 538 123 HOH WAT . 
I 3 HOH A 38 539 131 HOH WAT . 
I 3 HOH A 39 540 134 HOH WAT . 
I 3 HOH A 40 541 137 HOH WAT . 
I 3 HOH A 41 542 138 HOH WAT . 
I 3 HOH A 42 543 141 HOH WAT . 
I 3 HOH A 43 544 142 HOH WAT . 
I 3 HOH A 44 545 144 HOH WAT . 
I 3 HOH A 45 546 147 HOH WAT . 
I 3 HOH A 46 548 154 HOH WAT . 
I 3 HOH A 47 549 159 HOH WAT . 
I 3 HOH A 48 550 161 HOH WAT . 
I 3 HOH A 49 551 162 HOH WAT . 
I 3 HOH A 50 552 163 HOH WAT . 
I 3 HOH A 51 553 165 HOH WAT . 
I 3 HOH A 52 554 166 HOH WAT . 
I 3 HOH A 53 555 167 HOH WAT . 
I 3 HOH A 54 556 168 HOH WAT . 
J 3 HOH B 1 501 4 HOH WAT . 
J 3 HOH B 2 502 6 HOH WAT . 
J 3 HOH B 3 503 9 HOH WAT . 
J 3 HOH B 4 504 14 HOH WAT . 
J 3 HOH B 5 505 16 HOH WAT . 
J 3 HOH B 6 506 19 HOH WAT . 
J 3 HOH B 7 507 23 HOH WAT . 
J 3 HOH B 8 508 25 HOH WAT . 
J 3 HOH B 9 509 29 HOH WAT . 
J 3 HOH B 10 510 30 HOH WAT . 
J 3 HOH B 11 511 32 HOH WAT . 
J 3 HOH B 12 512 33 HOH WAT . 
J 3 HOH B 13 513 45 HOH WAT . 
J 3 HOH B 14 514 49 HOH WAT . 
J 3 HOH B 15 515 52 HOH WAT . 
J 3 HOH B 16 516 54 HOH WAT . 
J 3 HOH B 17 517 61 HOH WAT . 
J 3 HOH B 18 518 63 HOH WAT . 
J 3 HOH B 19 519 68 HOH WAT . 
J 3 HOH B 20 520 81 HOH WAT . 
J 3 HOH B 21 521 88 HOH WAT . 
J 3 HOH B 22 522 90 HOH WAT . 
J 3 HOH B 23 523 92 HOH WAT . 
J 3 HOH B 24 524 94 HOH WAT . 
J 3 HOH B 25 525 101 HOH WAT . 
J 3 HOH B 26 526 115 HOH WAT . 
J 3 HOH B 27 528 129 HOH WAT . 
J 3 HOH B 28 529 140 HOH WAT . 
J 3 HOH B 29 530 145 HOH WAT . 
J 3 HOH B 30 531 150 HOH WAT . 
J 3 HOH B 31 532 152 HOH WAT . 
J 3 HOH B 32 533 157 HOH WAT . 
J 3 HOH B 33 534 158 HOH WAT . 
J 3 HOH B 34 535 160 HOH WAT . 
J 3 HOH B 35 536 164 HOH WAT . 
K 3 HOH C 1 501 11 HOH WAT . 
K 3 HOH C 2 502 18 HOH WAT . 
K 3 HOH C 3 503 20 HOH WAT . 
K 3 HOH C 4 504 21 HOH WAT . 
K 3 HOH C 5 505 22 HOH WAT . 
K 3 HOH C 6 506 27 HOH WAT . 
K 3 HOH C 7 507 31 HOH WAT . 
K 3 HOH C 8 508 36 HOH WAT . 
K 3 HOH C 9 509 40 HOH WAT . 
K 3 HOH C 10 510 41 HOH WAT . 
K 3 HOH C 11 511 42 HOH WAT . 
K 3 HOH C 12 512 55 HOH WAT . 
K 3 HOH C 13 513 57 HOH WAT . 
K 3 HOH C 14 514 64 HOH WAT . 
K 3 HOH C 15 515 75 HOH WAT . 
K 3 HOH C 16 516 79 HOH WAT . 
K 3 HOH C 17 517 80 HOH WAT . 
K 3 HOH C 18 518 84 HOH WAT . 
K 3 HOH C 19 519 85 HOH WAT . 
K 3 HOH C 20 520 86 HOH WAT . 
K 3 HOH C 21 521 93 HOH WAT . 
K 3 HOH C 22 522 103 HOH WAT . 
K 3 HOH C 23 523 105 HOH WAT . 
K 3 HOH C 24 524 106 HOH WAT . 
K 3 HOH C 25 525 113 HOH WAT . 
K 3 HOH C 26 526 114 HOH WAT . 
K 3 HOH C 27 527 119 HOH WAT . 
K 3 HOH C 28 528 125 HOH WAT . 
K 3 HOH C 29 529 127 HOH WAT . 
K 3 HOH C 30 531 132 HOH WAT . 
K 3 HOH C 31 532 133 HOH WAT . 
K 3 HOH C 32 533 135 HOH WAT . 
K 3 HOH C 33 534 139 HOH WAT . 
K 3 HOH C 34 535 149 HOH WAT . 
K 3 HOH C 35 536 151 HOH WAT . 
K 3 HOH C 36 537 155 HOH WAT . 
K 3 HOH C 37 538 156 HOH WAT . 
K 3 HOH C 38 539 169 HOH WAT . 
K 3 HOH C 39 540 170 HOH WAT . 
K 3 HOH C 40 541 171 HOH WAT . 
K 3 HOH C 41 542 172 HOH WAT . 
L 3 HOH D 1 501 3 HOH WAT . 
L 3 HOH D 2 502 10 HOH WAT . 
L 3 HOH D 3 503 13 HOH WAT . 
L 3 HOH D 4 504 15 HOH WAT . 
L 3 HOH D 5 505 17 HOH WAT . 
L 3 HOH D 6 506 26 HOH WAT . 
L 3 HOH D 7 507 28 HOH WAT . 
L 3 HOH D 8 508 34 HOH WAT . 
L 3 HOH D 9 509 35 HOH WAT . 
L 3 HOH D 10 510 38 HOH WAT . 
L 3 HOH D 11 511 39 HOH WAT . 
L 3 HOH D 12 512 43 HOH WAT . 
L 3 HOH D 13 513 46 HOH WAT . 
L 3 HOH D 14 514 47 HOH WAT . 
L 3 HOH D 15 515 51 HOH WAT . 
L 3 HOH D 16 516 60 HOH WAT . 
L 3 HOH D 17 517 65 HOH WAT . 
L 3 HOH D 18 518 67 HOH WAT . 
L 3 HOH D 19 519 70 HOH WAT . 
L 3 HOH D 20 520 72 HOH WAT . 
L 3 HOH D 21 521 73 HOH WAT . 
L 3 HOH D 22 522 83 HOH WAT . 
L 3 HOH D 23 523 87 HOH WAT . 
L 3 HOH D 24 524 89 HOH WAT . 
L 3 HOH D 25 525 91 HOH WAT . 
L 3 HOH D 26 526 95 HOH WAT . 
L 3 HOH D 27 527 99 HOH WAT . 
L 3 HOH D 28 528 108 HOH WAT . 
L 3 HOH D 29 529 109 HOH WAT . 
L 3 HOH D 30 530 110 HOH WAT . 
L 3 HOH D 31 531 118 HOH WAT . 
L 3 HOH D 32 532 124 HOH WAT . 
L 3 HOH D 33 533 126 HOH WAT . 
L 3 HOH D 34 534 130 HOH WAT . 
L 3 HOH D 35 535 136 HOH WAT . 
L 3 HOH D 36 536 143 HOH WAT . 
L 3 HOH D 37 537 146 HOH WAT . 
L 3 HOH D 38 538 148 HOH WAT . 
L 3 HOH D 39 539 173 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAD BH3 . . . E 2 15.247 -18.752 -14.606 1 123.33 ? OAD BH3 401 A 1 
HETATM 2 P PBC BH3 . . . E 2 13.967 -17.834 -14.273 1 123.55 ? PBC BH3 401 A 1 
HETATM 3 O OAE BH3 . . . E 2 12.701 -18.599 -14.908 1 123.34 ? OAE BH3 401 A 1 
HETATM 4 O OAB BH3 . . . E 2 14.107 -16.455 -14.791 1 124.2 ? OAB BH3 401 A 1 
HETATM 5 C CAZ BH3 . . . E 2 13.742 -17.903 -12.45 1 125.15 ? CAZ BH3 401 A 1 
HETATM 6 P PBD BH3 . . . E 2 14.778 -16.622 -11.637 1 127.47 ? PBD BH3 401 A 1 
HETATM 7 O OAF BH3 . . . E 2 13.994 -15.225 -11.802 1 127.39 ? OAF BH3 401 A 1 
HETATM 8 O OAG BH3 . . . E 2 14.741 -16.969 -10.066 1 127.34 ? OAG BH3 401 A 1 
HETATM 9 O OAC BH3 . . . E 2 16.158 -16.568 -12.173 1 126.77 ? OAC BH3 401 A 1 
HETATM 10 C CAY BH3 . . . E 2 14.161 -19.284 -11.94 1 123.33 ? CAY BH3 401 A 1 
HETATM 11 N NBB BH3 . . . E 2 13.02 -20.227 -11.929 1 121.01 ? NBB BH3 401 A 1 
HETATM 12 C CAJ BH3 . . . E 2 12.704 -21.077 -12.903 1 119.35 ? CAJ BH3 401 A 1 
HETATM 13 C CAI BH3 . . . E 2 12.198 -20.443 -10.907 1 119.97 ? CAI BH3 401 A 1 
HETATM 14 C CAH BH3 . . . E 2 11.374 -21.431 -11.247 1 118.84 ? CAH BH3 401 A 1 
HETATM 15 N NBA BH3 . . . E 2 11.688 -21.821 -12.478 1 117.59 ? NBA BH3 401 A 1 
HETATM 16 C CAX BH3 . . . E 2 11.056 -22.935 -13.222 1 114.17 ? CAX BH3 401 A 1 
HETATM 17 C CAW BH3 . . . E 2 10.251 -22.418 -14.416 1 110.02 ? CAW BH3 401 A 1 
HETATM 18 C CAV BH3 . . . E 2 10.534 -23.293 -15.639 1 104.7 ? CAV BH3 401 A 1 
HETATM 19 C CAU BH3 . . . E 2 11.406 -22.519 -16.63 1 100.77 ? CAU BH3 401 A 1 
HETATM 20 C CAT BH3 . . . E 2 12.828 -23.081 -16.61 1 96.71 ? CAT BH3 401 A 1 
HETATM 21 C CAS BH3 . . . E 2 13.819 -21.975 -16.981 1 91.17 ? CAS BH3 401 A 1 
HETATM 22 C CAR BH3 . . . E 2 14.914 -22.547 -17.883 1 86.83 ? CAR BH3 401 A 1 
HETATM 23 C CAQ BH3 . . . E 2 15.506 -21.428 -18.743 1 82.37 ? CAQ BH3 401 A 1 
HETATM 24 C CAP BH3 . . . E 2 15.39 -21.801 -20.222 1 76.61 ? CAP BH3 401 A 1 
HETATM 25 C CAO BH3 . . . E 2 15.472 -20.536 -21.08 1 71.46 ? CAO BH3 401 A 1 
HETATM 26 C CAN BH3 . . . E 2 15.331 -20.912 -22.556 1 67.98 ? CAN BH3 401 A 1 
HETATM 27 C CAM BH3 . . . E 2 16.42 -20.21 -23.37 1 65.05 ? CAM BH3 401 A 1 
HETATM 28 C CAL BH3 . . . E 2 16.368 -20.696 -24.82 1 63.26 ? CAL BH3 401 A 1 
HETATM 29 C CAK BH3 . . . E 2 16.5 -19.5 -25.765 1 63.58 ? CAK BH3 401 A 1 
HETATM 30 C CAA BH3 . . . E 2 16.565 -19.995 -27.211 1 62.15 ? CAA BH3 401 A 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           30 
#