data_3WCG # _model_server_result.job_id nvLXDQMmzVKK9NkfZJHVUw _model_server_result.datetime_utc '2024-11-02 13:34:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wcg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 3WCG # _exptl.entry_id 3WCG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.489 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'hydrogen [(1R)-2-(3-pentadecyl-1H-imidazol-3-ium-1-yl)-1-phosphonoethyl]phosphonate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WCG _cell.length_a 83.088 _cell.length_b 128.974 _cell.length_c 144.971 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WCG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 PISA monomeric 1 software_defined_assembly 4 PISA monomeric 1 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 1 A,E,I 2 1 B,F,J 3 1 C,G,K 4 1 D,H,L 5 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C20 H40 N2 O6 P2' _chem_comp.formula_weight 466.489 _chem_comp.id BH3 _chem_comp.mon_nstd_flag . _chem_comp.name 'hydrogen [(1R)-2-(3-pentadecyl-1H-imidazol-3-ium-1-yl)-1-phosphonoethyl]phosphonate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAK BH3 sing 70 n n CAK CAL BH3 sing 71 n n CAL CAM BH3 sing 72 n n CAM CAN BH3 sing 73 n n CAN CAO BH3 sing 74 n n CAO CAP BH3 sing 75 n n CAP CAQ BH3 sing 76 n n CAQ CAR BH3 sing 77 n n CAR CAS BH3 sing 78 n n CAS CAT BH3 sing 79 n n CAT CAU BH3 sing 80 n n CAU CAV BH3 sing 81 n n CAV CAW BH3 sing 82 n n OAE PBC BH3 doub 83 n n OAB PBC BH3 sing 84 n n OAD PBC BH3 sing 85 n n CAW CAX BH3 sing 86 n n PBC CAZ BH3 sing 87 n n CAX NBA BH3 sing 88 n n CAJ NBA BH3 doub 89 n y CAJ NBB BH3 sing 90 n y NBA CAH BH3 sing 91 n y CAZ CAY BH3 sing 92 n n CAZ PBD BH3 sing 93 n n OAC PBD BH3 doub 94 n n CAY NBB BH3 sing 95 n n NBB CAI BH3 sing 96 n y OAF PBD BH3 sing 97 n n PBD OAG BH3 sing 98 n n CAH CAI BH3 doub 99 n y OAD H1 BH3 sing 100 n n CAZ H3 BH3 sing 101 n n OAF H4 BH3 sing 102 n n OAG H5 BH3 sing 103 n n CAY H6 BH3 sing 104 n n CAY H7 BH3 sing 105 n n CAJ H8 BH3 sing 106 n n CAI H9 BH3 sing 107 n n CAH H10 BH3 sing 108 n n CAX H11 BH3 sing 109 n n CAX H12 BH3 sing 110 n n CAW H13 BH3 sing 111 n n CAW H14 BH3 sing 112 n n CAV H15 BH3 sing 113 n n CAV H16 BH3 sing 114 n n CAU H17 BH3 sing 115 n n CAU H18 BH3 sing 116 n n CAT H19 BH3 sing 117 n n CAT H20 BH3 sing 118 n n CAS H21 BH3 sing 119 n n CAS H22 BH3 sing 120 n n CAR H23 BH3 sing 121 n n CAR H24 BH3 sing 122 n n CAQ H25 BH3 sing 123 n n CAQ H26 BH3 sing 124 n n CAP H27 BH3 sing 125 n n CAP H28 BH3 sing 126 n n CAO H29 BH3 sing 127 n n CAO H30 BH3 sing 128 n n CAN H31 BH3 sing 129 n n CAN H32 BH3 sing 130 n n CAM H33 BH3 sing 131 n n CAM H34 BH3 sing 132 n n CAL H35 BH3 sing 133 n n CAL H36 BH3 sing 134 n n CAK H37 BH3 sing 135 n n CAK H38 BH3 sing 136 n n CAA H39 BH3 sing 137 n n CAA H40 BH3 sing 138 n n CAA H41 BH3 sing 139 n n # _atom_sites.entry_id 3WCG _atom_sites.fract_transf_matrix[1][1] 0.012035 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007754 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 BH3 A 1 401 1 BH3 BH3 . F 2 BH3 B 1 401 2 BH3 BH3 . G 2 BH3 C 1 401 3 BH3 BH3 . H 2 BH3 D 1 401 4 BH3 BH3 . I 3 HOH A 1 501 1 HOH WAT . I 3 HOH A 2 502 2 HOH WAT . I 3 HOH A 3 503 5 HOH WAT . I 3 HOH A 4 504 7 HOH WAT . I 3 HOH A 5 505 8 HOH WAT . I 3 HOH A 6 506 12 HOH WAT . I 3 HOH A 7 507 24 HOH WAT . I 3 HOH A 8 508 37 HOH WAT . I 3 HOH A 9 509 44 HOH WAT . I 3 HOH A 10 510 48 HOH WAT . I 3 HOH A 11 511 50 HOH WAT . I 3 HOH A 12 512 53 HOH WAT . I 3 HOH A 13 513 56 HOH WAT . I 3 HOH A 14 514 58 HOH WAT . I 3 HOH A 15 515 59 HOH WAT . I 3 HOH A 16 516 62 HOH WAT . I 3 HOH A 17 517 66 HOH WAT . I 3 HOH A 18 518 69 HOH WAT . I 3 HOH A 19 520 74 HOH WAT . I 3 HOH A 20 521 76 HOH WAT . I 3 HOH A 21 522 77 HOH WAT . I 3 HOH A 22 523 78 HOH WAT . I 3 HOH A 23 524 82 HOH WAT . I 3 HOH A 24 525 96 HOH WAT . I 3 HOH A 25 526 97 HOH WAT . I 3 HOH A 26 527 98 HOH WAT . I 3 HOH A 27 528 100 HOH WAT . I 3 HOH A 28 529 102 HOH WAT . I 3 HOH A 29 530 104 HOH WAT . I 3 HOH A 30 531 107 HOH WAT . I 3 HOH A 31 532 111 HOH WAT . I 3 HOH A 32 533 112 HOH WAT . I 3 HOH A 33 534 116 HOH WAT . I 3 HOH A 34 535 117 HOH WAT . I 3 HOH A 35 536 120 HOH WAT . I 3 HOH A 36 537 121 HOH WAT . I 3 HOH A 37 538 123 HOH WAT . I 3 HOH A 38 539 131 HOH WAT . I 3 HOH A 39 540 134 HOH WAT . I 3 HOH A 40 541 137 HOH WAT . I 3 HOH A 41 542 138 HOH WAT . I 3 HOH A 42 543 141 HOH WAT . I 3 HOH A 43 544 142 HOH WAT . I 3 HOH A 44 545 144 HOH WAT . I 3 HOH A 45 546 147 HOH WAT . I 3 HOH A 46 548 154 HOH WAT . I 3 HOH A 47 549 159 HOH WAT . I 3 HOH A 48 550 161 HOH WAT . I 3 HOH A 49 551 162 HOH WAT . I 3 HOH A 50 552 163 HOH WAT . I 3 HOH A 51 553 165 HOH WAT . I 3 HOH A 52 554 166 HOH WAT . I 3 HOH A 53 555 167 HOH WAT . I 3 HOH A 54 556 168 HOH WAT . J 3 HOH B 1 501 4 HOH WAT . J 3 HOH B 2 502 6 HOH WAT . J 3 HOH B 3 503 9 HOH WAT . J 3 HOH B 4 504 14 HOH WAT . J 3 HOH B 5 505 16 HOH WAT . J 3 HOH B 6 506 19 HOH WAT . J 3 HOH B 7 507 23 HOH WAT . J 3 HOH B 8 508 25 HOH WAT . J 3 HOH B 9 509 29 HOH WAT . J 3 HOH B 10 510 30 HOH WAT . J 3 HOH B 11 511 32 HOH WAT . J 3 HOH B 12 512 33 HOH WAT . J 3 HOH B 13 513 45 HOH WAT . J 3 HOH B 14 514 49 HOH WAT . J 3 HOH B 15 515 52 HOH WAT . J 3 HOH B 16 516 54 HOH WAT . J 3 HOH B 17 517 61 HOH WAT . J 3 HOH B 18 518 63 HOH WAT . J 3 HOH B 19 519 68 HOH WAT . J 3 HOH B 20 520 81 HOH WAT . J 3 HOH B 21 521 88 HOH WAT . J 3 HOH B 22 522 90 HOH WAT . J 3 HOH B 23 523 92 HOH WAT . J 3 HOH B 24 524 94 HOH WAT . J 3 HOH B 25 525 101 HOH WAT . J 3 HOH B 26 526 115 HOH WAT . J 3 HOH B 27 528 129 HOH WAT . J 3 HOH B 28 529 140 HOH WAT . J 3 HOH B 29 530 145 HOH WAT . J 3 HOH B 30 531 150 HOH WAT . J 3 HOH B 31 532 152 HOH WAT . J 3 HOH B 32 533 157 HOH WAT . J 3 HOH B 33 534 158 HOH WAT . J 3 HOH B 34 535 160 HOH WAT . J 3 HOH B 35 536 164 HOH WAT . K 3 HOH C 1 501 11 HOH WAT . K 3 HOH C 2 502 18 HOH WAT . K 3 HOH C 3 503 20 HOH WAT . K 3 HOH C 4 504 21 HOH WAT . K 3 HOH C 5 505 22 HOH WAT . K 3 HOH C 6 506 27 HOH WAT . K 3 HOH C 7 507 31 HOH WAT . K 3 HOH C 8 508 36 HOH WAT . K 3 HOH C 9 509 40 HOH WAT . K 3 HOH C 10 510 41 HOH WAT . K 3 HOH C 11 511 42 HOH WAT . K 3 HOH C 12 512 55 HOH WAT . K 3 HOH C 13 513 57 HOH WAT . K 3 HOH C 14 514 64 HOH WAT . K 3 HOH C 15 515 75 HOH WAT . K 3 HOH C 16 516 79 HOH WAT . K 3 HOH C 17 517 80 HOH WAT . K 3 HOH C 18 518 84 HOH WAT . K 3 HOH C 19 519 85 HOH WAT . K 3 HOH C 20 520 86 HOH WAT . K 3 HOH C 21 521 93 HOH WAT . K 3 HOH C 22 522 103 HOH WAT . K 3 HOH C 23 523 105 HOH WAT . K 3 HOH C 24 524 106 HOH WAT . K 3 HOH C 25 525 113 HOH WAT . K 3 HOH C 26 526 114 HOH WAT . K 3 HOH C 27 527 119 HOH WAT . K 3 HOH C 28 528 125 HOH WAT . K 3 HOH C 29 529 127 HOH WAT . K 3 HOH C 30 531 132 HOH WAT . K 3 HOH C 31 532 133 HOH WAT . K 3 HOH C 32 533 135 HOH WAT . K 3 HOH C 33 534 139 HOH WAT . K 3 HOH C 34 535 149 HOH WAT . K 3 HOH C 35 536 151 HOH WAT . K 3 HOH C 36 537 155 HOH WAT . K 3 HOH C 37 538 156 HOH WAT . K 3 HOH C 38 539 169 HOH WAT . K 3 HOH C 39 540 170 HOH WAT . K 3 HOH C 40 541 171 HOH WAT . K 3 HOH C 41 542 172 HOH WAT . L 3 HOH D 1 501 3 HOH WAT . L 3 HOH D 2 502 10 HOH WAT . L 3 HOH D 3 503 13 HOH WAT . L 3 HOH D 4 504 15 HOH WAT . L 3 HOH D 5 505 17 HOH WAT . L 3 HOH D 6 506 26 HOH WAT . L 3 HOH D 7 507 28 HOH WAT . L 3 HOH D 8 508 34 HOH WAT . L 3 HOH D 9 509 35 HOH WAT . L 3 HOH D 10 510 38 HOH WAT . L 3 HOH D 11 511 39 HOH WAT . L 3 HOH D 12 512 43 HOH WAT . L 3 HOH D 13 513 46 HOH WAT . L 3 HOH D 14 514 47 HOH WAT . L 3 HOH D 15 515 51 HOH WAT . L 3 HOH D 16 516 60 HOH WAT . L 3 HOH D 17 517 65 HOH WAT . L 3 HOH D 18 518 67 HOH WAT . L 3 HOH D 19 519 70 HOH WAT . L 3 HOH D 20 520 72 HOH WAT . L 3 HOH D 21 521 73 HOH WAT . L 3 HOH D 22 522 83 HOH WAT . L 3 HOH D 23 523 87 HOH WAT . L 3 HOH D 24 524 89 HOH WAT . L 3 HOH D 25 525 91 HOH WAT . L 3 HOH D 26 526 95 HOH WAT . L 3 HOH D 27 527 99 HOH WAT . L 3 HOH D 28 528 108 HOH WAT . L 3 HOH D 29 529 109 HOH WAT . L 3 HOH D 30 530 110 HOH WAT . L 3 HOH D 31 531 118 HOH WAT . L 3 HOH D 32 532 124 HOH WAT . L 3 HOH D 33 533 126 HOH WAT . L 3 HOH D 34 534 130 HOH WAT . L 3 HOH D 35 535 136 HOH WAT . L 3 HOH D 36 536 143 HOH WAT . L 3 HOH D 37 537 146 HOH WAT . L 3 HOH D 38 538 148 HOH WAT . L 3 HOH D 39 539 173 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAD BH3 . . . E 2 15.247 -18.752 -14.606 1 123.33 ? OAD BH3 401 A 1 HETATM 2 P PBC BH3 . . . E 2 13.967 -17.834 -14.273 1 123.55 ? PBC BH3 401 A 1 HETATM 3 O OAE BH3 . . . E 2 12.701 -18.599 -14.908 1 123.34 ? OAE BH3 401 A 1 HETATM 4 O OAB BH3 . . . E 2 14.107 -16.455 -14.791 1 124.2 ? OAB BH3 401 A 1 HETATM 5 C CAZ BH3 . . . E 2 13.742 -17.903 -12.45 1 125.15 ? CAZ BH3 401 A 1 HETATM 6 P PBD BH3 . . . E 2 14.778 -16.622 -11.637 1 127.47 ? PBD BH3 401 A 1 HETATM 7 O OAF BH3 . . . E 2 13.994 -15.225 -11.802 1 127.39 ? OAF BH3 401 A 1 HETATM 8 O OAG BH3 . . . E 2 14.741 -16.969 -10.066 1 127.34 ? OAG BH3 401 A 1 HETATM 9 O OAC BH3 . . . E 2 16.158 -16.568 -12.173 1 126.77 ? OAC BH3 401 A 1 HETATM 10 C CAY BH3 . . . E 2 14.161 -19.284 -11.94 1 123.33 ? CAY BH3 401 A 1 HETATM 11 N NBB BH3 . . . E 2 13.02 -20.227 -11.929 1 121.01 ? NBB BH3 401 A 1 HETATM 12 C CAJ BH3 . . . E 2 12.704 -21.077 -12.903 1 119.35 ? CAJ BH3 401 A 1 HETATM 13 C CAI BH3 . . . E 2 12.198 -20.443 -10.907 1 119.97 ? CAI BH3 401 A 1 HETATM 14 C CAH BH3 . . . E 2 11.374 -21.431 -11.247 1 118.84 ? CAH BH3 401 A 1 HETATM 15 N NBA BH3 . . . E 2 11.688 -21.821 -12.478 1 117.59 ? NBA BH3 401 A 1 HETATM 16 C CAX BH3 . . . E 2 11.056 -22.935 -13.222 1 114.17 ? CAX BH3 401 A 1 HETATM 17 C CAW BH3 . . . E 2 10.251 -22.418 -14.416 1 110.02 ? CAW BH3 401 A 1 HETATM 18 C CAV BH3 . . . E 2 10.534 -23.293 -15.639 1 104.7 ? CAV BH3 401 A 1 HETATM 19 C CAU BH3 . . . E 2 11.406 -22.519 -16.63 1 100.77 ? CAU BH3 401 A 1 HETATM 20 C CAT BH3 . . . E 2 12.828 -23.081 -16.61 1 96.71 ? CAT BH3 401 A 1 HETATM 21 C CAS BH3 . . . E 2 13.819 -21.975 -16.981 1 91.17 ? CAS BH3 401 A 1 HETATM 22 C CAR BH3 . . . E 2 14.914 -22.547 -17.883 1 86.83 ? CAR BH3 401 A 1 HETATM 23 C CAQ BH3 . . . E 2 15.506 -21.428 -18.743 1 82.37 ? CAQ BH3 401 A 1 HETATM 24 C CAP BH3 . . . E 2 15.39 -21.801 -20.222 1 76.61 ? CAP BH3 401 A 1 HETATM 25 C CAO BH3 . . . E 2 15.472 -20.536 -21.08 1 71.46 ? CAO BH3 401 A 1 HETATM 26 C CAN BH3 . . . E 2 15.331 -20.912 -22.556 1 67.98 ? CAN BH3 401 A 1 HETATM 27 C CAM BH3 . . . E 2 16.42 -20.21 -23.37 1 65.05 ? CAM BH3 401 A 1 HETATM 28 C CAL BH3 . . . E 2 16.368 -20.696 -24.82 1 63.26 ? CAL BH3 401 A 1 HETATM 29 C CAK BH3 . . . E 2 16.5 -19.5 -25.765 1 63.58 ? CAK BH3 401 A 1 HETATM 30 C CAA BH3 . . . E 2 16.565 -19.995 -27.211 1 62.15 ? CAA BH3 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #