data_3WCO # _model_server_result.job_id 7A0CsxCT1JJ-N_QU7ngVog _model_server_result.datetime_utc '2025-03-06 08:01:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wco # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 3WCO # _exptl.entry_id 3WCO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.128 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description THIOSULFATE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.23 _cell.angle_gamma 90 _cell.entry_id 3WCO _cell.length_a 59.19 _cell.length_b 81.286 _cell.length_c 95.537 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WCO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 61 1_555 A N LYS 2 A LYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C LEU 4 A LEU 64 1_555 A N MSE 5 A MSE 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C MSE 5 A MSE 65 1_555 A N LYS 6 A LYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C ILE 118 A ILE 178 1_555 A N MSE 119 A MSE 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C MSE 119 A MSE 179 1_555 A N LYS 120 A LYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C LEU 151 A LEU 211 1_555 A N MSE 152 A MSE 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 A C MSE 152 A MSE 212 1_555 A N LYS 153 A LYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 A C ASP 224 A ASP 284 1_555 A N LLP 225 A LLP 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C LLP 225 A LLP 285 1_555 A N LEU 226 A LEU 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 A C GLU 265 A GLU 325 1_555 A N MSE 266 A MSE 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 A C MSE 266 A MSE 326 1_555 A N THR 267 A THR 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 A C ARG 283 A ARG 343 1_555 A N MSE 284 A MSE 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale13 A C MSE 284 A MSE 344 1_555 A N LEU 285 A LEU 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale14 A C ASP 370 A ASP 430 1_555 A N MSE 371 A MSE 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 A C MSE 371 A MSE 431 1_555 A N ARG 372 A ARG 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 B C LEU 4 B LEU 64 1_555 B N MSE 5 B MSE 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale17 B C MSE 5 B MSE 65 1_555 B N LYS 6 B LYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale18 B C ILE 118 B ILE 178 1_555 B N MSE 119 B MSE 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale19 B C MSE 119 B MSE 179 1_555 B N LYS 120 B LYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale20 B C LEU 151 B LEU 211 1_555 B N MSE 152 B MSE 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale21 B C MSE 152 B MSE 212 1_555 B N LYS 153 B LYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale22 B C ASP 224 B ASP 284 1_555 B N LLP 225 B LLP 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale23 B C LLP 225 B LLP 285 1_555 B N LEU 226 B LEU 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale24 B C GLU 265 B GLU 325 1_555 B N MSE 266 B MSE 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale25 B C MSE 266 B MSE 326 1_555 B N THR 267 B THR 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale26 B C ARG 283 B ARG 343 1_555 B N MSE 284 B MSE 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale27 B C MSE 284 B MSE 344 1_555 B N LEU 285 B LEU 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale28 B C ASP 370 B ASP 430 1_555 B N MSE 371 B MSE 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale29 B C MSE 371 B MSE 431 1_555 B N ARG 372 B ARG 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'O3 S2 -2' _chem_comp.formula_weight 112.128 _chem_comp.id THJ _chem_comp.mon_nstd_flag . _chem_comp.name THIOSULFATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 O1 THJ doub 337 n n S1 O2 THJ doub 338 n n S1 O3 THJ sing 339 n n S1 S2 THJ sing 340 n n # _atom_sites.entry_id 3WCO _atom_sites.fract_transf_matrix[1][1] 0.016895 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000657 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012302 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 THJ A 1 3001 3001 THJ THJ . D 2 THJ A 1 3002 3002 THJ THJ . E 2 THJ A 1 3003 3003 THJ THJ . F 2 THJ B 1 501 3004 THJ THJ . G 2 THJ B 1 502 3005 THJ THJ . H 3 HOH A 1 3101 1002 HOH HOH . H 3 HOH A 2 3102 1006 HOH HOH . H 3 HOH A 3 3103 1010 HOH HOH . H 3 HOH A 4 3104 1013 HOH HOH . H 3 HOH A 5 3105 1014 HOH HOH . H 3 HOH A 6 3106 1015 HOH HOH . H 3 HOH A 7 3107 1016 HOH HOH . H 3 HOH A 8 3108 1017 HOH HOH . H 3 HOH A 9 3109 1018 HOH HOH . H 3 HOH A 10 3110 1019 HOH HOH . H 3 HOH A 11 3111 1024 HOH HOH . H 3 HOH A 12 3112 1026 HOH HOH . H 3 HOH A 13 3113 1029 HOH HOH . H 3 HOH A 14 3114 1031 HOH HOH . H 3 HOH A 15 3115 1038 HOH HOH . H 3 HOH A 16 3116 1039 HOH HOH . H 3 HOH A 17 3117 1041 HOH HOH . H 3 HOH A 18 3118 1043 HOH HOH . H 3 HOH A 19 3119 1045 HOH HOH . H 3 HOH A 20 3120 1047 HOH HOH . H 3 HOH A 21 3121 1052 HOH HOH . H 3 HOH A 22 3122 1053 HOH HOH . H 3 HOH A 23 3123 1054 HOH HOH . H 3 HOH A 24 3124 1058 HOH HOH . H 3 HOH A 25 3125 1062 HOH HOH . H 3 HOH A 26 3126 1064 HOH HOH . H 3 HOH A 27 3127 1065 HOH HOH . H 3 HOH A 28 3128 1067 HOH HOH . H 3 HOH A 29 3129 1068 HOH HOH . H 3 HOH A 30 3130 1074 HOH HOH . H 3 HOH A 31 3131 1076 HOH HOH . H 3 HOH A 32 3132 1079 HOH HOH . H 3 HOH A 33 3133 1080 HOH HOH . H 3 HOH A 34 3134 1087 HOH HOH . H 3 HOH A 35 3135 1088 HOH HOH . H 3 HOH A 36 3136 1092 HOH HOH . H 3 HOH A 37 3137 1095 HOH HOH . H 3 HOH A 38 3138 1099 HOH HOH . H 3 HOH A 39 3139 1103 HOH HOH . H 3 HOH A 40 3140 1107 HOH HOH . H 3 HOH A 41 3141 1113 HOH HOH . H 3 HOH A 42 3142 1114 HOH HOH . H 3 HOH A 43 3143 1117 HOH HOH . H 3 HOH A 44 3144 1119 HOH HOH . H 3 HOH A 45 3145 1120 HOH HOH . H 3 HOH A 46 3146 1122 HOH HOH . H 3 HOH A 47 3147 1128 HOH HOH . H 3 HOH A 48 3148 1138 HOH HOH . H 3 HOH A 49 3149 1141 HOH HOH . H 3 HOH A 50 3150 1144 HOH HOH . H 3 HOH A 51 3151 1147 HOH HOH . H 3 HOH A 52 3152 1153 HOH HOH . I 3 HOH B 1 1001 1001 HOH HOH . I 3 HOH B 2 1002 1008 HOH HOH . I 3 HOH B 3 1003 1009 HOH HOH . I 3 HOH B 4 1004 1011 HOH HOH . I 3 HOH B 5 1005 1012 HOH HOH . I 3 HOH B 6 1006 1020 HOH HOH . I 3 HOH B 7 1007 1021 HOH HOH . I 3 HOH B 8 1008 1023 HOH HOH . I 3 HOH B 9 1009 1027 HOH HOH . I 3 HOH B 10 1010 1028 HOH HOH . I 3 HOH B 11 1011 1030 HOH HOH . I 3 HOH B 12 1012 1032 HOH HOH . I 3 HOH B 13 1013 1035 HOH HOH . I 3 HOH B 14 1014 1036 HOH HOH . I 3 HOH B 15 1015 1037 HOH HOH . I 3 HOH B 16 1016 1040 HOH HOH . I 3 HOH B 17 1017 1044 HOH HOH . I 3 HOH B 18 1018 1046 HOH HOH . I 3 HOH B 19 1019 1048 HOH HOH . I 3 HOH B 20 1020 1050 HOH HOH . I 3 HOH B 21 1021 1051 HOH HOH . I 3 HOH B 22 1022 1056 HOH HOH . I 3 HOH B 23 1023 1059 HOH HOH . I 3 HOH B 24 1024 1060 HOH HOH . I 3 HOH B 25 1025 1061 HOH HOH . I 3 HOH B 26 1026 1069 HOH HOH . I 3 HOH B 27 1027 1070 HOH HOH . I 3 HOH B 28 1028 1072 HOH HOH . I 3 HOH B 29 1029 1077 HOH HOH . I 3 HOH B 30 1030 1078 HOH HOH . I 3 HOH B 31 1031 1083 HOH HOH . I 3 HOH B 32 1032 1084 HOH HOH . I 3 HOH B 33 1033 1085 HOH HOH . I 3 HOH B 34 1034 1086 HOH HOH . I 3 HOH B 35 1035 1089 HOH HOH . I 3 HOH B 36 1036 1090 HOH HOH . I 3 HOH B 37 1037 1091 HOH HOH . I 3 HOH B 38 1038 1093 HOH HOH . I 3 HOH B 39 1039 1096 HOH HOH . I 3 HOH B 40 1040 1100 HOH HOH . I 3 HOH B 41 1041 1104 HOH HOH . I 3 HOH B 42 1042 1105 HOH HOH . I 3 HOH B 43 1043 1108 HOH HOH . I 3 HOH B 44 1044 1110 HOH HOH . I 3 HOH B 45 1045 1112 HOH HOH . I 3 HOH B 46 1046 1118 HOH HOH . I 3 HOH B 47 1047 1123 HOH HOH . I 3 HOH B 48 1048 1124 HOH HOH . I 3 HOH B 49 1049 1126 HOH HOH . I 3 HOH B 50 1050 1127 HOH HOH . I 3 HOH B 51 1051 1131 HOH HOH . I 3 HOH B 52 1052 1134 HOH HOH . I 3 HOH B 53 1053 1137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 THJ . . . F 2 3.791 -27.871 14.515 1 79.08 ? S1 THJ 501 B 1 HETATM 2 O O1 THJ . . . F 2 2.977 -26.682 14.553 1 80.05 ? O1 THJ 501 B 1 HETATM 3 O O2 THJ . . . F 2 4.835 -27.65 13.536 1 73.4 ? O2 THJ 501 B 1 HETATM 4 O O3 THJ . . . F 2 2.953 -28.978 14.098 1 88.89 ? O3 THJ 501 B 1 HETATM 5 S S2 THJ . . . F 2 4.581 -28.279 16.336 1 98.1 ? S2 THJ 501 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 516 _model_server_stats.encode_time_ms 26 _model_server_stats.element_count 5 #