data_3WCS # _model_server_result.job_id bq3NxsYhYnBdLo5G1yssZA _model_server_result.datetime_utc '2024-11-22 06:08:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wcs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1002}' # _entry.id 3WCS # _exptl.entry_id 3WCS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WCS _cell.length_a 76.579 _cell.length_b 196.193 _cell.length_c 98.655 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WCS _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -49.3275 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 N N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG MAN C1 O1 . O2 HO2 . sing 2 ? 2 3 2 GAL NAG C1 O1 . O4 HO4 . sing 3 ? 3 2 1 NAG MAN C1 O1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C MAN 1 C 1 MAN A 3002 MAN 2 n C NAG 2 C 2 NAG A 3003 NAG 2 n C GAL 3 C 3 GAL A 3004 GAL 3 n D MAN 1 D 1 MAN B 3002 MAN 3 n D NAG 2 D 2 NAG B 3003 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 12 A ASN 33 1_555 E C1 NAG . A NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 B ND2 ASN 12 B ASN 33 1_555 M C1 NAG . B NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 C O2 MAN . C MAN 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 C O4 NAG . C NAG 2 1_555 C C1 GAL . C GAL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale5 D O2 MAN . D MAN 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? metalc ? metalc1 A OE2 GLU 124 A GLU 145 1_555 F MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc2 A OD2 ASP 126 A ASP 147 1_555 F MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc3 A OD1 ASP 126 A ASP 147 1_555 G CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc4 A OD2 ASP 126 A ASP 147 1_555 G CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc5 A O LEU 128 A LEU 149 1_555 G CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc6 A OD1 ASN 130 A ASN 151 1_555 G CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc7 A OD1 ASP 134 A ASP 155 1_555 F MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc8 A OD2 ASP 134 A ASP 155 1_555 G CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc9 A NE2 HIS 139 A HIS 160 1_555 F MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc10 F MN MN . A MN 1002 1_555 P O HOH . A HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc11 F MN MN . A MN 1002 1_555 P O HOH . A HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc12 G CA CA . A CA 1003 1_555 P O HOH . A HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc13 G CA CA . A CA 1003 1_555 P O HOH . A HOH 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc14 B OE2 GLU 124 B GLU 145 1_555 N MN MN . B MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc15 B OD2 ASP 126 B ASP 147 1_555 N MN MN . B MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc16 B OD1 ASP 126 B ASP 147 1_555 O CA CA . B CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc17 B OD2 ASP 126 B ASP 147 1_555 O CA CA . B CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc18 B O LEU 128 B LEU 149 1_555 O CA CA . B CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc19 B OD1 ASN 130 B ASN 151 1_555 O CA CA . B CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc20 B OD1 ASP 134 B ASP 155 1_555 N MN MN . B MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc21 B OD2 ASP 134 B ASP 155 1_555 O CA CA . B CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc22 B NE2 HIS 139 B HIS 160 1_555 N MN MN . B MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc23 N MN MN . B MN 1002 1_555 Q O HOH . B HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc24 N MN MN . B MN 1002 1_555 Q O HOH . B HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc25 O CA CA . B CA 1003 1_555 Q O HOH . B HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc26 O CA CA . B CA 1003 1_555 Q O HOH . B HOH 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3WCS _atom_sites.fract_transf_matrix[1][1] 0.013058 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005097 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010136 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NAG A 1 1001 1001 NAG NAG . F 5 MN A 1 1002 2001 MN MN . G 6 CA A 1 1003 2002 CA CA . H 7 EDO A 1 1007 1001 EDO EDO . I 7 EDO A 1 1008 1002 EDO EDO . J 7 EDO A 1 1009 1003 EDO EDO . K 7 EDO A 1 1010 1004 EDO EDO . L 7 EDO A 1 1011 1005 EDO EDO . M 4 NAG B 1 1001 1001 NAG NAG . N 5 MN B 1 1002 2001 MN MN . O 6 CA B 1 1003 2002 CA CA . P 8 HOH A 1 1101 1 HOH HOH . P 8 HOH A 2 1102 2 HOH HOH . P 8 HOH A 3 1103 3 HOH HOH . P 8 HOH A 4 1104 4 HOH HOH . P 8 HOH A 5 1105 5 HOH HOH . P 8 HOH A 6 1106 6 HOH HOH . P 8 HOH A 7 1107 7 HOH HOH . P 8 HOH A 8 1108 8 HOH HOH . P 8 HOH A 9 1109 9 HOH HOH . P 8 HOH A 10 1110 10 HOH HOH . P 8 HOH A 11 1111 11 HOH HOH . P 8 HOH A 12 1112 12 HOH HOH . P 8 HOH A 13 1113 13 HOH HOH . P 8 HOH A 14 1114 14 HOH HOH . P 8 HOH A 15 1115 15 HOH HOH . P 8 HOH A 16 1116 21 HOH HOH . P 8 HOH A 17 1117 22 HOH HOH . P 8 HOH A 18 1118 23 HOH HOH . P 8 HOH A 19 1119 24 HOH HOH . P 8 HOH A 20 1120 25 HOH HOH . P 8 HOH A 21 1121 26 HOH HOH . P 8 HOH A 22 1122 28 HOH HOH . P 8 HOH A 23 1123 29 HOH HOH . P 8 HOH A 24 1124 30 HOH HOH . P 8 HOH A 25 1125 31 HOH HOH . P 8 HOH A 26 1126 32 HOH HOH . P 8 HOH A 27 1127 33 HOH HOH . P 8 HOH A 28 1128 34 HOH HOH . P 8 HOH A 29 1129 35 HOH HOH . P 8 HOH A 30 1130 36 HOH HOH . P 8 HOH A 31 1131 37 HOH HOH . P 8 HOH A 32 1132 38 HOH HOH . P 8 HOH A 33 1133 39 HOH HOH . P 8 HOH A 34 1134 40 HOH HOH . P 8 HOH A 35 1135 41 HOH HOH . P 8 HOH A 36 1136 42 HOH HOH . P 8 HOH A 37 1137 43 HOH HOH . P 8 HOH A 38 1138 44 HOH HOH . P 8 HOH A 39 1139 45 HOH HOH . P 8 HOH A 40 1140 46 HOH HOH . P 8 HOH A 41 1141 47 HOH HOH . P 8 HOH A 42 1142 48 HOH HOH . P 8 HOH A 43 1143 49 HOH HOH . P 8 HOH A 44 1144 50 HOH HOH . P 8 HOH A 45 1145 52 HOH HOH . P 8 HOH A 46 1146 55 HOH HOH . P 8 HOH A 47 1147 56 HOH HOH . P 8 HOH A 48 1148 57 HOH HOH . P 8 HOH A 49 1149 58 HOH HOH . P 8 HOH A 50 1150 59 HOH HOH . P 8 HOH A 51 1151 60 HOH HOH . P 8 HOH A 52 1152 61 HOH HOH . P 8 HOH A 53 1153 62 HOH HOH . P 8 HOH A 54 1154 63 HOH HOH . P 8 HOH A 55 1155 64 HOH HOH . P 8 HOH A 56 1156 65 HOH HOH . P 8 HOH A 57 1157 66 HOH HOH . P 8 HOH A 58 1158 67 HOH HOH . P 8 HOH A 59 1159 68 HOH HOH . P 8 HOH A 60 1160 69 HOH HOH . P 8 HOH A 61 1161 70 HOH HOH . P 8 HOH A 62 1162 71 HOH HOH . P 8 HOH A 63 1163 72 HOH HOH . P 8 HOH A 64 1164 73 HOH HOH . P 8 HOH A 65 1165 74 HOH HOH . P 8 HOH A 66 1166 75 HOH HOH . P 8 HOH A 67 1167 76 HOH HOH . P 8 HOH A 68 1168 77 HOH HOH . P 8 HOH A 69 1169 78 HOH HOH . P 8 HOH A 70 1170 79 HOH HOH . P 8 HOH A 71 1171 80 HOH HOH . P 8 HOH A 72 1172 82 HOH HOH . P 8 HOH A 73 1173 83 HOH HOH . P 8 HOH A 74 1174 84 HOH HOH . P 8 HOH A 75 1175 85 HOH HOH . P 8 HOH A 76 1176 86 HOH HOH . P 8 HOH A 77 1177 87 HOH HOH . P 8 HOH A 78 1178 88 HOH HOH . P 8 HOH A 79 1179 89 HOH HOH . P 8 HOH A 80 1180 90 HOH HOH . P 8 HOH A 81 1181 91 HOH HOH . P 8 HOH A 82 1182 92 HOH HOH . P 8 HOH A 83 1183 93 HOH HOH . P 8 HOH A 84 1184 94 HOH HOH . P 8 HOH A 85 1185 95 HOH HOH . P 8 HOH A 86 1186 101 HOH HOH . P 8 HOH A 87 1187 102 HOH HOH . P 8 HOH A 88 1188 103 HOH HOH . P 8 HOH A 89 1189 104 HOH HOH . P 8 HOH A 90 1190 105 HOH HOH . P 8 HOH A 91 1191 106 HOH HOH . P 8 HOH A 92 1192 107 HOH HOH . P 8 HOH A 93 1193 108 HOH HOH . P 8 HOH A 94 1194 109 HOH HOH . P 8 HOH A 95 1195 110 HOH HOH . P 8 HOH A 96 1196 111 HOH HOH . P 8 HOH A 97 1197 112 HOH HOH . P 8 HOH A 98 1198 113 HOH HOH . P 8 HOH A 99 1199 114 HOH HOH . P 8 HOH A 100 1200 115 HOH HOH . P 8 HOH A 101 1201 117 HOH HOH . P 8 HOH A 102 1202 118 HOH HOH . P 8 HOH A 103 1203 119 HOH HOH . P 8 HOH A 104 1204 123 HOH HOH . P 8 HOH A 105 1205 124 HOH HOH . P 8 HOH A 106 1206 127 HOH HOH . P 8 HOH A 107 1207 128 HOH HOH . P 8 HOH A 108 1208 130 HOH HOH . P 8 HOH A 109 1209 131 HOH HOH . P 8 HOH A 110 1210 133 HOH HOH . P 8 HOH A 111 1211 134 HOH HOH . P 8 HOH A 112 1212 135 HOH HOH . P 8 HOH A 113 1213 137 HOH HOH . P 8 HOH A 114 1214 138 HOH HOH . P 8 HOH A 115 1215 139 HOH HOH . P 8 HOH A 116 1216 140 HOH HOH . P 8 HOH A 117 1217 141 HOH HOH . P 8 HOH A 118 1218 142 HOH HOH . P 8 HOH A 119 1219 143 HOH HOH . P 8 HOH A 120 1220 144 HOH HOH . P 8 HOH A 121 1221 145 HOH HOH . P 8 HOH A 122 1222 146 HOH HOH . P 8 HOH A 123 1223 147 HOH HOH . P 8 HOH A 124 1224 148 HOH HOH . P 8 HOH A 125 1225 149 HOH HOH . Q 8 HOH B 1 1101 16 HOH HOH . Q 8 HOH B 2 1102 17 HOH HOH . Q 8 HOH B 3 1103 18 HOH HOH . Q 8 HOH B 4 1104 19 HOH HOH . Q 8 HOH B 5 1105 20 HOH HOH . Q 8 HOH B 6 1106 27 HOH HOH . Q 8 HOH B 7 1107 51 HOH HOH . Q 8 HOH B 8 1108 53 HOH HOH . Q 8 HOH B 9 1109 54 HOH HOH . Q 8 HOH B 10 1110 81 HOH HOH . Q 8 HOH B 11 1111 96 HOH HOH . Q 8 HOH B 12 1112 97 HOH HOH . Q 8 HOH B 13 1113 98 HOH HOH . Q 8 HOH B 14 1114 99 HOH HOH . Q 8 HOH B 15 1115 100 HOH HOH . Q 8 HOH B 16 1116 116 HOH HOH . Q 8 HOH B 17 1117 120 HOH HOH . Q 8 HOH B 18 1118 121 HOH HOH . Q 8 HOH B 19 1119 122 HOH HOH . Q 8 HOH B 20 1120 125 HOH HOH . Q 8 HOH B 21 1121 126 HOH HOH . Q 8 HOH B 22 1122 129 HOH HOH . Q 8 HOH B 23 1123 132 HOH HOH . Q 8 HOH B 24 1124 136 HOH HOH . Q 8 HOH B 25 1125 150 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 18.604 _atom_site.Cartn_y 47.597 _atom_site.Cartn_z -1.014 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #