data_3WD1 # _model_server_result.job_id xWO2y5EYeBsZu69wxsJBDQ _model_server_result.datetime_utc '2024-11-14 04:31:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wd1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":509}' # _entry.id 3WD1 # _exptl.entry_id 3WD1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WD1 _cell.length_a 97.768 _cell.length_b 97.768 _cell.length_c 197.757 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WD1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 332 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 328 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 335 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 331 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.109 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3WD1 _atom_sites.fract_transf_matrix[1][1] 0.010228 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010228 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005057 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 1 GOL GOL . C 2 GOL A 1 502 2 GOL GOL . D 2 GOL A 1 503 3 GOL GOL . E 2 GOL A 1 504 4 GOL GOL . F 2 GOL A 1 505 5 GOL GOL . G 2 GOL A 1 506 6 GOL GOL . H 2 GOL A 1 507 7 GOL GOL . I 2 GOL A 1 508 8 GOL GOL . J 2 GOL A 1 509 9 GOL GOL . K 2 GOL A 1 510 10 GOL GOL . L 3 SO4 A 1 511 11 SO4 SO4 . M 3 SO4 A 1 512 12 SO4 SO4 . N 4 PO3 A 1 513 13 PO3 PO3 . O 5 ST7 A 1 514 1 ST7 ST1 . P 6 HOH A 1 601 1 HOH HOH . P 6 HOH A 2 602 2 HOH HOH . P 6 HOH A 3 603 3 HOH HOH . P 6 HOH A 4 604 4 HOH HOH . P 6 HOH A 5 605 5 HOH HOH . P 6 HOH A 6 606 6 HOH HOH . P 6 HOH A 7 607 7 HOH HOH . P 6 HOH A 8 608 8 HOH HOH . P 6 HOH A 9 609 9 HOH HOH . P 6 HOH A 10 610 10 HOH HOH . P 6 HOH A 11 611 11 HOH HOH . P 6 HOH A 12 612 12 HOH HOH . P 6 HOH A 13 613 13 HOH HOH . P 6 HOH A 14 614 14 HOH HOH . P 6 HOH A 15 615 15 HOH HOH . P 6 HOH A 16 616 16 HOH HOH . P 6 HOH A 17 617 17 HOH HOH . P 6 HOH A 18 618 18 HOH HOH . P 6 HOH A 19 619 19 HOH HOH . P 6 HOH A 20 620 20 HOH HOH . P 6 HOH A 21 621 21 HOH HOH . P 6 HOH A 22 622 22 HOH HOH . P 6 HOH A 23 623 23 HOH HOH . P 6 HOH A 24 624 24 HOH HOH . P 6 HOH A 25 625 25 HOH HOH . P 6 HOH A 26 626 26 HOH HOH . P 6 HOH A 27 627 27 HOH HOH . P 6 HOH A 28 628 28 HOH HOH . P 6 HOH A 29 629 29 HOH HOH . P 6 HOH A 30 630 30 HOH HOH . P 6 HOH A 31 631 31 HOH HOH . P 6 HOH A 32 632 32 HOH HOH . P 6 HOH A 33 633 33 HOH HOH . P 6 HOH A 34 634 34 HOH HOH . P 6 HOH A 35 635 35 HOH HOH . P 6 HOH A 36 636 36 HOH HOH . P 6 HOH A 37 637 37 HOH HOH . P 6 HOH A 38 638 38 HOH HOH . P 6 HOH A 39 639 39 HOH HOH . P 6 HOH A 40 640 40 HOH HOH . P 6 HOH A 41 641 41 HOH HOH . P 6 HOH A 42 642 42 HOH HOH . P 6 HOH A 43 643 43 HOH HOH . P 6 HOH A 44 644 44 HOH HOH . P 6 HOH A 45 645 45 HOH HOH . P 6 HOH A 46 646 46 HOH HOH . P 6 HOH A 47 647 47 HOH HOH . P 6 HOH A 48 648 48 HOH HOH . P 6 HOH A 49 649 49 HOH HOH . P 6 HOH A 50 650 50 HOH HOH . P 6 HOH A 51 651 51 HOH HOH . P 6 HOH A 52 652 52 HOH HOH . P 6 HOH A 53 653 53 HOH HOH . P 6 HOH A 54 654 54 HOH HOH . P 6 HOH A 55 655 55 HOH HOH . P 6 HOH A 56 656 56 HOH HOH . P 6 HOH A 57 657 57 HOH HOH . P 6 HOH A 58 658 58 HOH HOH . P 6 HOH A 59 659 59 HOH HOH . P 6 HOH A 60 660 60 HOH HOH . P 6 HOH A 61 661 61 HOH HOH . P 6 HOH A 62 662 62 HOH HOH . P 6 HOH A 63 663 63 HOH HOH . P 6 HOH A 64 664 64 HOH HOH . P 6 HOH A 65 665 65 HOH HOH . P 6 HOH A 66 666 66 HOH HOH . P 6 HOH A 67 667 67 HOH HOH . P 6 HOH A 68 668 68 HOH HOH . P 6 HOH A 69 669 69 HOH HOH . P 6 HOH A 70 670 70 HOH HOH . P 6 HOH A 71 671 71 HOH HOH . P 6 HOH A 72 672 72 HOH HOH . P 6 HOH A 73 673 73 HOH HOH . P 6 HOH A 74 674 74 HOH HOH . P 6 HOH A 75 675 75 HOH HOH . P 6 HOH A 76 676 76 HOH HOH . P 6 HOH A 77 677 77 HOH HOH . P 6 HOH A 78 678 78 HOH HOH . P 6 HOH A 79 679 79 HOH HOH . P 6 HOH A 80 680 80 HOH HOH . P 6 HOH A 81 681 81 HOH HOH . P 6 HOH A 82 682 82 HOH HOH . P 6 HOH A 83 683 83 HOH HOH . P 6 HOH A 84 684 84 HOH HOH . P 6 HOH A 85 685 85 HOH HOH . P 6 HOH A 86 686 86 HOH HOH . P 6 HOH A 87 687 87 HOH HOH . P 6 HOH A 88 688 88 HOH HOH . P 6 HOH A 89 689 89 HOH HOH . P 6 HOH A 90 690 90 HOH HOH . P 6 HOH A 91 691 91 HOH HOH . P 6 HOH A 92 692 92 HOH HOH . P 6 HOH A 93 693 93 HOH HOH . P 6 HOH A 94 694 94 HOH HOH . P 6 HOH A 95 695 95 HOH HOH . P 6 HOH A 96 696 96 HOH HOH . P 6 HOH A 97 697 97 HOH HOH . P 6 HOH A 98 698 98 HOH HOH . P 6 HOH A 99 699 99 HOH HOH . P 6 HOH A 100 700 100 HOH HOH . P 6 HOH A 101 701 101 HOH HOH . P 6 HOH A 102 702 102 HOH HOH . P 6 HOH A 103 703 103 HOH HOH . P 6 HOH A 104 704 104 HOH HOH . P 6 HOH A 105 705 105 HOH HOH . P 6 HOH A 106 706 106 HOH HOH . P 6 HOH A 107 707 107 HOH HOH . P 6 HOH A 108 708 108 HOH HOH . P 6 HOH A 109 709 109 HOH HOH . P 6 HOH A 110 710 110 HOH HOH . P 6 HOH A 111 711 111 HOH HOH . P 6 HOH A 112 712 112 HOH HOH . P 6 HOH A 113 713 113 HOH HOH . P 6 HOH A 114 714 114 HOH HOH . P 6 HOH A 115 715 115 HOH HOH . P 6 HOH A 116 716 116 HOH HOH . P 6 HOH A 117 717 117 HOH HOH . P 6 HOH A 118 718 118 HOH HOH . P 6 HOH A 119 719 119 HOH HOH . P 6 HOH A 120 720 120 HOH HOH . P 6 HOH A 121 721 121 HOH HOH . P 6 HOH A 122 722 122 HOH HOH . P 6 HOH A 123 723 123 HOH HOH . P 6 HOH A 124 724 124 HOH HOH . P 6 HOH A 125 725 125 HOH HOH . P 6 HOH A 126 726 126 HOH HOH . P 6 HOH A 127 727 127 HOH HOH . P 6 HOH A 128 728 128 HOH HOH . P 6 HOH A 129 729 129 HOH HOH . P 6 HOH A 130 730 130 HOH HOH . P 6 HOH A 131 731 131 HOH HOH . P 6 HOH A 132 732 132 HOH HOH . P 6 HOH A 133 733 133 HOH HOH . P 6 HOH A 134 734 134 HOH HOH . P 6 HOH A 135 735 135 HOH HOH . P 6 HOH A 136 736 136 HOH HOH . P 6 HOH A 137 737 137 HOH HOH . P 6 HOH A 138 738 138 HOH HOH . P 6 HOH A 139 739 139 HOH HOH . P 6 HOH A 140 740 140 HOH HOH . P 6 HOH A 141 741 141 HOH HOH . P 6 HOH A 142 742 142 HOH HOH . P 6 HOH A 143 743 143 HOH HOH . P 6 HOH A 144 744 144 HOH HOH . P 6 HOH A 145 745 145 HOH HOH . P 6 HOH A 146 746 146 HOH HOH . P 6 HOH A 147 747 147 HOH HOH . P 6 HOH A 148 748 148 HOH HOH . P 6 HOH A 149 749 149 HOH HOH . P 6 HOH A 150 750 150 HOH HOH . P 6 HOH A 151 751 151 HOH HOH . P 6 HOH A 152 752 152 HOH HOH . P 6 HOH A 153 753 153 HOH HOH . P 6 HOH A 154 754 154 HOH HOH . P 6 HOH A 155 755 155 HOH HOH . P 6 HOH A 156 756 156 HOH HOH . P 6 HOH A 157 757 157 HOH HOH . P 6 HOH A 158 758 158 HOH HOH . P 6 HOH A 159 759 159 HOH HOH . P 6 HOH A 160 760 160 HOH HOH . P 6 HOH A 161 761 161 HOH HOH . P 6 HOH A 162 762 162 HOH HOH . P 6 HOH A 163 763 163 HOH HOH . P 6 HOH A 164 764 164 HOH HOH . P 6 HOH A 165 765 165 HOH HOH . P 6 HOH A 166 766 166 HOH HOH . P 6 HOH A 167 767 167 HOH HOH . P 6 HOH A 168 768 168 HOH HOH . P 6 HOH A 169 769 169 HOH HOH . P 6 HOH A 170 770 170 HOH HOH . P 6 HOH A 171 771 171 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 2 2.979 -11.016 -23.253 1 66.26 ? C1 GOL 509 A 1 HETATM 2 O O1 GOL . . . J 2 3.65 -10.453 -22.119 1 57.1 ? O1 GOL 509 A 1 HETATM 3 C C2 GOL . . . J 2 4.018 -11.285 -24.356 1 74.44 ? C2 GOL 509 A 1 HETATM 4 O O2 GOL . . . J 2 5.135 -10.384 -24.277 1 69.8 ? O2 GOL 509 A 1 HETATM 5 C C3 GOL . . . J 2 3.453 -11.117 -25.766 1 76.22 ? C3 GOL 509 A 1 HETATM 6 O O3 GOL . . . J 2 3.042 -12.353 -26.397 1 73.7 ? O3 GOL 509 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #