data_3WDC # _model_server_result.job_id zw3t65RkXBpoKGnJQroIzA _model_server_result.datetime_utc '2025-04-05 18:06:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wdc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 3WDC # _exptl.entry_id 3WDC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WDC _cell.length_a 33.88 _cell.length_b 58.69 _cell.length_c 63.62 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WDC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C WRP 1 B WRP 1 1_555 B N WLU 2 B WLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale2 B N WRP 1 B WRP 1 1_555 B C WVL 7 B WVL 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 B C WLU 2 B WLU 2 1_555 B N ALA 3 B ALA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? covale ? covale4 B C ALA 3 B ALA 3 1_555 B N WPA 4 B WPA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale5 B C WPA 4 B WPA 4 1_555 B N VAL 5 B VAL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale6 B C VAL 5 B VAL 5 1_555 B N MLE 6 B MLE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale7 B C MLE 6 B MLE 6 1_555 B N WVL 7 B WVL 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 3WDC _atom_sites.fract_transf_matrix[1][1] 0.029516 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017039 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015718 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ACT A 1 201 201 ACT ACT . D 4 HOH A 1 301 301 HOH HOH . D 4 HOH A 2 302 302 HOH HOH . D 4 HOH A 3 303 303 HOH HOH . D 4 HOH A 4 304 304 HOH HOH . D 4 HOH A 5 305 305 HOH HOH . D 4 HOH A 6 306 306 HOH HOH . D 4 HOH A 7 307 307 HOH HOH . D 4 HOH A 8 308 308 HOH HOH . D 4 HOH A 9 309 309 HOH HOH . D 4 HOH A 10 310 310 HOH HOH . D 4 HOH A 11 311 311 HOH HOH . D 4 HOH A 12 312 312 HOH HOH . D 4 HOH A 13 313 313 HOH HOH . D 4 HOH A 14 314 314 HOH HOH . D 4 HOH A 15 315 315 HOH HOH . D 4 HOH A 16 316 316 HOH HOH . D 4 HOH A 17 317 317 HOH HOH . D 4 HOH A 18 318 318 HOH HOH . D 4 HOH A 19 319 319 HOH HOH . D 4 HOH A 20 320 320 HOH HOH . D 4 HOH A 21 321 321 HOH HOH . D 4 HOH A 22 322 322 HOH HOH . D 4 HOH A 23 323 323 HOH HOH . D 4 HOH A 24 324 325 HOH HOH . D 4 HOH A 25 325 326 HOH HOH . D 4 HOH A 26 326 327 HOH HOH . D 4 HOH A 27 327 328 HOH HOH . D 4 HOH A 28 328 329 HOH HOH . D 4 HOH A 29 329 330 HOH HOH . D 4 HOH A 30 330 331 HOH HOH . D 4 HOH A 31 331 332 HOH HOH . D 4 HOH A 32 332 333 HOH HOH . D 4 HOH A 33 333 334 HOH HOH . D 4 HOH A 34 334 335 HOH HOH . D 4 HOH A 35 335 336 HOH HOH . D 4 HOH A 36 336 337 HOH HOH . D 4 HOH A 37 337 338 HOH HOH . D 4 HOH A 38 338 339 HOH HOH . D 4 HOH A 39 339 340 HOH HOH . D 4 HOH A 40 340 341 HOH HOH . D 4 HOH A 41 341 342 HOH HOH . D 4 HOH A 42 342 343 HOH HOH . D 4 HOH A 43 343 344 HOH HOH . D 4 HOH A 44 344 345 HOH HOH . D 4 HOH A 45 345 346 HOH HOH . D 4 HOH A 46 346 347 HOH HOH . D 4 HOH A 47 347 348 HOH HOH . D 4 HOH A 48 348 349 HOH HOH . D 4 HOH A 49 349 350 HOH HOH . D 4 HOH A 50 350 351 HOH HOH . D 4 HOH A 51 351 352 HOH HOH . D 4 HOH A 52 352 353 HOH HOH . D 4 HOH A 53 353 354 HOH HOH . D 4 HOH A 54 354 355 HOH HOH . D 4 HOH A 55 355 356 HOH HOH . D 4 HOH A 56 356 357 HOH HOH . D 4 HOH A 57 357 358 HOH HOH . D 4 HOH A 58 358 359 HOH HOH . D 4 HOH A 59 359 360 HOH HOH . D 4 HOH A 60 360 361 HOH HOH . D 4 HOH A 61 361 362 HOH HOH . D 4 HOH A 62 362 363 HOH HOH . D 4 HOH A 63 363 364 HOH HOH . D 4 HOH A 64 364 365 HOH HOH . D 4 HOH A 65 365 366 HOH HOH . D 4 HOH A 66 366 367 HOH HOH . D 4 HOH A 67 367 368 HOH HOH . D 4 HOH A 68 368 369 HOH HOH . D 4 HOH A 69 369 370 HOH HOH . D 4 HOH A 70 370 371 HOH HOH . D 4 HOH A 71 371 372 HOH HOH . D 4 HOH A 72 372 373 HOH HOH . D 4 HOH A 73 373 374 HOH HOH . D 4 HOH A 74 374 375 HOH HOH . D 4 HOH A 75 375 376 HOH HOH . D 4 HOH A 76 376 377 HOH HOH . D 4 HOH A 77 377 378 HOH HOH . D 4 HOH A 78 378 379 HOH HOH . D 4 HOH A 79 379 380 HOH HOH . D 4 HOH A 80 380 381 HOH HOH . D 4 HOH A 81 381 382 HOH HOH . D 4 HOH A 82 382 383 HOH HOH . D 4 HOH A 83 383 384 HOH HOH . D 4 HOH A 84 384 385 HOH HOH . D 4 HOH A 85 385 386 HOH HOH . D 4 HOH A 86 386 387 HOH HOH . D 4 HOH A 87 387 388 HOH HOH . D 4 HOH A 88 388 389 HOH HOH . D 4 HOH A 89 389 390 HOH HOH . D 4 HOH A 90 390 392 HOH HOH . D 4 HOH A 91 391 393 HOH HOH . D 4 HOH A 92 392 394 HOH HOH . D 4 HOH A 93 393 396 HOH HOH . D 4 HOH A 94 394 397 HOH HOH . D 4 HOH A 95 395 398 HOH HOH . D 4 HOH A 96 396 399 HOH HOH . D 4 HOH A 97 397 400 HOH HOH . D 4 HOH A 98 398 401 HOH HOH . D 4 HOH A 99 399 402 HOH HOH . D 4 HOH A 100 400 403 HOH HOH . D 4 HOH A 101 401 404 HOH HOH . D 4 HOH A 102 402 405 HOH HOH . D 4 HOH A 103 403 406 HOH HOH . D 4 HOH A 104 404 407 HOH HOH . D 4 HOH A 105 405 408 HOH HOH . D 4 HOH A 106 406 409 HOH HOH . D 4 HOH A 107 407 410 HOH HOH . D 4 HOH A 108 408 411 HOH HOH . D 4 HOH A 109 409 412 HOH HOH . D 4 HOH A 110 410 413 HOH HOH . D 4 HOH A 111 411 414 HOH HOH . D 4 HOH A 112 412 415 HOH HOH . D 4 HOH A 113 413 416 HOH HOH . D 4 HOH A 114 414 417 HOH HOH . D 4 HOH A 115 415 418 HOH HOH . D 4 HOH A 116 416 419 HOH HOH . D 4 HOH A 117 417 420 HOH HOH . D 4 HOH A 118 418 421 HOH HOH . D 4 HOH A 119 419 422 HOH HOH . D 4 HOH A 120 420 423 HOH HOH . D 4 HOH A 121 421 424 HOH HOH . D 4 HOH A 122 422 425 HOH HOH . D 4 HOH A 123 423 426 HOH HOH . D 4 HOH A 124 424 428 HOH HOH . D 4 HOH A 125 425 429 HOH HOH . D 4 HOH A 126 426 430 HOH HOH . D 4 HOH A 127 427 431 HOH HOH . D 4 HOH A 128 428 432 HOH HOH . D 4 HOH A 129 429 433 HOH HOH . D 4 HOH A 130 430 435 HOH HOH . D 4 HOH A 131 431 436 HOH HOH . D 4 HOH A 132 432 437 HOH HOH . D 4 HOH A 133 433 438 HOH HOH . D 4 HOH A 134 434 439 HOH HOH . D 4 HOH A 135 435 440 HOH HOH . D 4 HOH A 136 436 441 HOH HOH . D 4 HOH A 137 437 442 HOH HOH . D 4 HOH A 138 438 443 HOH HOH . D 4 HOH A 139 439 445 HOH HOH . D 4 HOH A 140 440 446 HOH HOH . D 4 HOH A 141 441 447 HOH HOH . D 4 HOH A 142 442 448 HOH HOH . D 4 HOH A 143 443 449 HOH HOH . D 4 HOH A 144 444 450 HOH HOH . D 4 HOH A 145 445 451 HOH HOH . D 4 HOH A 146 446 452 HOH HOH . D 4 HOH A 147 447 453 HOH HOH . D 4 HOH A 148 448 454 HOH HOH . D 4 HOH A 149 449 455 HOH HOH . D 4 HOH A 150 450 456 HOH HOH . D 4 HOH A 151 451 457 HOH HOH . D 4 HOH A 152 452 458 HOH HOH . D 4 HOH A 153 453 459 HOH HOH . D 4 HOH A 154 454 460 HOH HOH . D 4 HOH A 155 455 461 HOH HOH . D 4 HOH A 156 456 462 HOH HOH . D 4 HOH A 157 457 463 HOH HOH . D 4 HOH A 158 458 464 HOH HOH . E 4 HOH B 1 101 324 HOH HOH . E 4 HOH B 2 102 101 HOH HOH . E 4 HOH B 3 103 102 HOH HOH . E 4 HOH B 4 104 103 HOH HOH . E 4 HOH B 5 105 104 HOH HOH . E 4 HOH B 6 106 105 HOH HOH . E 4 HOH B 7 107 106 HOH HOH . E 4 HOH B 8 108 110 HOH HOH . E 4 HOH B 9 109 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . C 3 -14.074 15.689 -17.945 1 5.91 ? C ACT 201 A 1 HETATM 2 O O ACT . . . C 3 -14.574 15.483 -16.801 1 5.52 ? O ACT 201 A 1 HETATM 3 O OXT ACT . . . C 3 -13.351 14.866 -18.543 1 6.53 ? OXT ACT 201 A 1 HETATM 4 C CH3 ACT . . . C 3 -14.418 16.976 -18.62 1 9.02 ? CH3 ACT 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #