data_3WDK
#
_model_server_result.job_id            i4ZdkjcZ035tQn_dONcvKg 
_model_server_result.datetime_utc      '2024-10-19 22:21:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3wdk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":302}' 
#
_entry.id    3WDK 
#
_exptl.entry_id    3WDK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              189.1 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CITRATE ANION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3WDK 
_cell.length_a            123.609 
_cell.length_b            123.609 
_cell.length_c            187.961 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3WDK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,L,M 1 1 
C,D,H,I,J,K,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
? 3 K N N 
#
_chem_comp.formula           'C6 H5 O7 -3' 
_chem_comp.formula_weight    189.1 
_chem_comp.id                FLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CITRATE ANION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAC CA FLC sing 70 n n 
CAC OA1 FLC doub 71 n n 
CAC OA2 FLC sing 72 n n 
CA CB FLC sing 73 n n 
CA HA1 FLC sing 74 n n 
CA HA2 FLC sing 75 n n 
CB CBC FLC sing 76 n n 
CB CG FLC sing 77 n n 
CB OHB FLC sing 78 n n 
CBC OB1 FLC doub 79 n n 
CBC OB2 FLC sing 80 n n 
CG CGC FLC sing 81 n n 
CG HG1 FLC sing 82 n n 
CG HG2 FLC sing 83 n n 
CGC OG1 FLC doub 84 n n 
CGC OG2 FLC sing 85 n n 
OHB HOB FLC sing 86 n n 
#
_atom_sites.entry_id                     3WDK 
_atom_sites.fract_transf_matrix[1][1]    0.00809 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00809 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00532 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PTJ A 1 301 900 PTJ PPA . 
F 3 FLC A 1 302 802 FLC FLC . 
G 2 PTJ B 1 901 901 PTJ PPA . 
H 2 PTJ C 1 301 902 PTJ PPA . 
I 3 FLC C 1 302 801 FLC FLC . 
J 2 PTJ D 1 301 903 PTJ PPA . 
K 3 FLC D 1 302 803 FLC FLC . 
L 4 HOH A 1 401 3 HOH TIP . 
L 4 HOH A 2 402 15 HOH TIP . 
L 4 HOH A 3 403 16 HOH TIP . 
L 4 HOH A 4 404 18 HOH TIP . 
L 4 HOH A 5 405 19 HOH TIP . 
L 4 HOH A 6 406 22 HOH TIP . 
L 4 HOH A 7 407 28 HOH TIP . 
L 4 HOH A 8 408 29 HOH TIP . 
L 4 HOH A 9 409 34 HOH TIP . 
L 4 HOH A 10 410 45 HOH TIP . 
L 4 HOH A 11 411 46 HOH TIP . 
L 4 HOH A 12 412 54 HOH TIP . 
L 4 HOH A 13 413 62 HOH TIP . 
L 4 HOH A 14 414 74 HOH TIP . 
L 4 HOH A 15 415 85 HOH TIP . 
L 4 HOH A 16 416 86 HOH TIP . 
L 4 HOH A 17 417 91 HOH TIP . 
L 4 HOH A 18 418 92 HOH TIP . 
L 4 HOH A 19 419 99 HOH TIP . 
L 4 HOH A 20 420 101 HOH TIP . 
L 4 HOH A 21 421 102 HOH TIP . 
L 4 HOH A 22 422 105 HOH TIP . 
L 4 HOH A 23 423 108 HOH TIP . 
L 4 HOH A 24 424 110 HOH TIP . 
L 4 HOH A 25 425 114 HOH TIP . 
L 4 HOH A 26 426 132 HOH TIP . 
L 4 HOH A 27 427 138 HOH TIP . 
L 4 HOH A 28 428 141 HOH TIP . 
L 4 HOH A 29 429 143 HOH TIP . 
L 4 HOH A 30 430 144 HOH TIP . 
L 4 HOH A 31 431 147 HOH TIP . 
L 4 HOH A 32 432 148 HOH TIP . 
L 4 HOH A 33 433 151 HOH TIP . 
L 4 HOH A 34 434 152 HOH TIP . 
L 4 HOH A 35 435 157 HOH TIP . 
L 4 HOH A 36 436 168 HOH TIP . 
L 4 HOH A 37 437 173 HOH TIP . 
L 4 HOH A 38 438 188 HOH TIP . 
L 4 HOH A 39 439 191 HOH TIP . 
L 4 HOH A 40 440 192 HOH TIP . 
L 4 HOH A 41 441 196 HOH TIP . 
L 4 HOH A 42 442 197 HOH TIP . 
L 4 HOH A 43 443 198 HOH TIP . 
L 4 HOH A 44 444 199 HOH TIP . 
L 4 HOH A 45 445 200 HOH TIP . 
L 4 HOH A 46 446 201 HOH TIP . 
L 4 HOH A 47 447 202 HOH TIP . 
L 4 HOH A 48 448 203 HOH TIP . 
L 4 HOH A 49 449 218 HOH TIP . 
L 4 HOH A 50 450 227 HOH TIP . 
L 4 HOH A 51 451 228 HOH TIP . 
L 4 HOH A 52 452 232 HOH TIP . 
L 4 HOH A 53 453 236 HOH TIP . 
L 4 HOH A 54 454 245 HOH TIP . 
L 4 HOH A 55 455 247 HOH TIP . 
L 4 HOH A 56 456 248 HOH TIP . 
L 4 HOH A 57 457 249 HOH TIP . 
M 4 HOH B 1 1001 2 HOH TIP . 
M 4 HOH B 2 1002 5 HOH TIP . 
M 4 HOH B 3 1003 6 HOH TIP . 
M 4 HOH B 4 1004 9 HOH TIP . 
M 4 HOH B 5 1005 10 HOH TIP . 
M 4 HOH B 6 1006 11 HOH TIP . 
M 4 HOH B 7 1007 21 HOH TIP . 
M 4 HOH B 8 1008 30 HOH TIP . 
M 4 HOH B 9 1009 36 HOH TIP . 
M 4 HOH B 10 1010 39 HOH TIP . 
M 4 HOH B 11 1011 40 HOH TIP . 
M 4 HOH B 12 1012 48 HOH TIP . 
M 4 HOH B 13 1013 60 HOH TIP . 
M 4 HOH B 14 1014 63 HOH TIP . 
M 4 HOH B 15 1015 68 HOH TIP . 
M 4 HOH B 16 1016 70 HOH TIP . 
M 4 HOH B 17 1017 78 HOH TIP . 
M 4 HOH B 18 1018 80 HOH TIP . 
M 4 HOH B 19 1019 82 HOH TIP . 
M 4 HOH B 20 1020 84 HOH TIP . 
M 4 HOH B 21 1021 87 HOH TIP . 
M 4 HOH B 22 1022 97 HOH TIP . 
M 4 HOH B 23 1023 98 HOH TIP . 
M 4 HOH B 24 1024 107 HOH TIP . 
M 4 HOH B 25 1025 111 HOH TIP . 
M 4 HOH B 26 1026 112 HOH TIP . 
M 4 HOH B 27 1027 115 HOH TIP . 
M 4 HOH B 28 1028 118 HOH TIP . 
M 4 HOH B 29 1029 121 HOH TIP . 
M 4 HOH B 30 1030 125 HOH TIP . 
M 4 HOH B 31 1031 126 HOH TIP . 
M 4 HOH B 32 1032 129 HOH TIP . 
M 4 HOH B 33 1033 135 HOH TIP . 
M 4 HOH B 34 1034 137 HOH TIP . 
M 4 HOH B 35 1035 139 HOH TIP . 
M 4 HOH B 36 1036 140 HOH TIP . 
M 4 HOH B 37 1037 150 HOH TIP . 
M 4 HOH B 38 1038 153 HOH TIP . 
M 4 HOH B 39 1039 154 HOH TIP . 
M 4 HOH B 40 1040 159 HOH TIP . 
M 4 HOH B 41 1041 160 HOH TIP . 
M 4 HOH B 42 1042 161 HOH TIP . 
M 4 HOH B 43 1043 171 HOH TIP . 
M 4 HOH B 44 1044 172 HOH TIP . 
M 4 HOH B 45 1045 177 HOH TIP . 
M 4 HOH B 46 1046 178 HOH TIP . 
M 4 HOH B 47 1047 179 HOH TIP . 
M 4 HOH B 48 1048 180 HOH TIP . 
M 4 HOH B 49 1049 181 HOH TIP . 
M 4 HOH B 50 1050 182 HOH TIP . 
M 4 HOH B 51 1051 183 HOH TIP . 
M 4 HOH B 52 1052 184 HOH TIP . 
M 4 HOH B 53 1053 185 HOH TIP . 
M 4 HOH B 54 1054 186 HOH TIP . 
M 4 HOH B 55 1055 187 HOH TIP . 
M 4 HOH B 56 1056 189 HOH TIP . 
M 4 HOH B 57 1057 190 HOH TIP . 
M 4 HOH B 58 1058 193 HOH TIP . 
M 4 HOH B 59 1059 204 HOH TIP . 
M 4 HOH B 60 1060 205 HOH TIP . 
M 4 HOH B 61 1061 206 HOH TIP . 
M 4 HOH B 62 1062 207 HOH TIP . 
M 4 HOH B 63 1063 208 HOH TIP . 
M 4 HOH B 64 1064 209 HOH TIP . 
M 4 HOH B 65 1065 210 HOH TIP . 
M 4 HOH B 66 1066 237 HOH TIP . 
M 4 HOH B 67 1067 238 HOH TIP . 
M 4 HOH B 68 1068 239 HOH TIP . 
M 4 HOH B 69 1069 250 HOH TIP . 
M 4 HOH B 70 1070 251 HOH TIP . 
N 4 HOH C 1 401 1 HOH TIP . 
N 4 HOH C 2 402 7 HOH TIP . 
N 4 HOH C 3 403 12 HOH TIP . 
N 4 HOH C 4 404 17 HOH TIP . 
N 4 HOH C 5 405 20 HOH TIP . 
N 4 HOH C 6 406 23 HOH TIP . 
N 4 HOH C 7 407 24 HOH TIP . 
N 4 HOH C 8 408 25 HOH TIP . 
N 4 HOH C 9 409 27 HOH TIP . 
N 4 HOH C 10 410 32 HOH TIP . 
N 4 HOH C 11 411 33 HOH TIP . 
N 4 HOH C 12 412 35 HOH TIP . 
N 4 HOH C 13 413 37 HOH TIP . 
N 4 HOH C 14 414 38 HOH TIP . 
N 4 HOH C 15 415 41 HOH TIP . 
N 4 HOH C 16 416 43 HOH TIP . 
N 4 HOH C 17 417 44 HOH TIP . 
N 4 HOH C 18 418 49 HOH TIP . 
N 4 HOH C 19 419 50 HOH TIP . 
N 4 HOH C 20 420 52 HOH TIP . 
N 4 HOH C 21 421 53 HOH TIP . 
N 4 HOH C 22 422 58 HOH TIP . 
N 4 HOH C 23 423 65 HOH TIP . 
N 4 HOH C 24 424 66 HOH TIP . 
N 4 HOH C 25 425 71 HOH TIP . 
N 4 HOH C 26 426 72 HOH TIP . 
N 4 HOH C 27 427 75 HOH TIP . 
N 4 HOH C 28 428 76 HOH TIP . 
N 4 HOH C 29 429 95 HOH TIP . 
N 4 HOH C 30 430 96 HOH TIP . 
N 4 HOH C 31 431 104 HOH TIP . 
N 4 HOH C 32 432 109 HOH TIP . 
N 4 HOH C 33 433 117 HOH TIP . 
N 4 HOH C 34 434 119 HOH TIP . 
N 4 HOH C 35 435 124 HOH TIP . 
N 4 HOH C 36 436 131 HOH TIP . 
N 4 HOH C 37 437 133 HOH TIP . 
N 4 HOH C 38 438 134 HOH TIP . 
N 4 HOH C 39 439 142 HOH TIP . 
N 4 HOH C 40 440 149 HOH TIP . 
N 4 HOH C 41 441 155 HOH TIP . 
N 4 HOH C 42 442 164 HOH TIP . 
N 4 HOH C 43 443 165 HOH TIP . 
N 4 HOH C 44 444 167 HOH TIP . 
N 4 HOH C 45 445 169 HOH TIP . 
N 4 HOH C 46 446 170 HOH TIP . 
N 4 HOH C 47 447 174 HOH TIP . 
N 4 HOH C 48 448 194 HOH TIP . 
N 4 HOH C 49 449 211 HOH TIP . 
N 4 HOH C 50 450 212 HOH TIP . 
N 4 HOH C 51 451 213 HOH TIP . 
N 4 HOH C 52 452 214 HOH TIP . 
N 4 HOH C 53 453 215 HOH TIP . 
N 4 HOH C 54 454 216 HOH TIP . 
N 4 HOH C 55 455 217 HOH TIP . 
N 4 HOH C 56 456 229 HOH TIP . 
N 4 HOH C 57 457 233 HOH TIP . 
N 4 HOH C 58 458 234 HOH TIP . 
N 4 HOH C 59 459 235 HOH TIP . 
N 4 HOH C 60 460 240 HOH TIP . 
N 4 HOH C 61 461 241 HOH TIP . 
N 4 HOH C 62 462 244 HOH TIP . 
N 4 HOH C 63 463 252 HOH TIP . 
O 4 HOH D 1 401 4 HOH TIP . 
O 4 HOH D 2 402 8 HOH TIP . 
O 4 HOH D 3 403 13 HOH TIP . 
O 4 HOH D 4 404 14 HOH TIP . 
O 4 HOH D 5 405 26 HOH TIP . 
O 4 HOH D 6 406 31 HOH TIP . 
O 4 HOH D 7 407 42 HOH TIP . 
O 4 HOH D 8 408 47 HOH TIP . 
O 4 HOH D 9 409 51 HOH TIP . 
O 4 HOH D 10 410 55 HOH TIP . 
O 4 HOH D 11 411 56 HOH TIP . 
O 4 HOH D 12 412 57 HOH TIP . 
O 4 HOH D 13 413 59 HOH TIP . 
O 4 HOH D 14 414 61 HOH TIP . 
O 4 HOH D 15 415 64 HOH TIP . 
O 4 HOH D 16 416 67 HOH TIP . 
O 4 HOH D 17 417 69 HOH TIP . 
O 4 HOH D 18 418 73 HOH TIP . 
O 4 HOH D 19 419 77 HOH TIP . 
O 4 HOH D 20 420 79 HOH TIP . 
O 4 HOH D 21 421 81 HOH TIP . 
O 4 HOH D 22 422 83 HOH TIP . 
O 4 HOH D 23 423 88 HOH TIP . 
O 4 HOH D 24 424 89 HOH TIP . 
O 4 HOH D 25 425 90 HOH TIP . 
O 4 HOH D 26 426 93 HOH TIP . 
O 4 HOH D 27 427 94 HOH TIP . 
O 4 HOH D 28 428 100 HOH TIP . 
O 4 HOH D 29 429 103 HOH TIP . 
O 4 HOH D 30 430 106 HOH TIP . 
O 4 HOH D 31 431 113 HOH TIP . 
O 4 HOH D 32 432 116 HOH TIP . 
O 4 HOH D 33 433 120 HOH TIP . 
O 4 HOH D 34 434 122 HOH TIP . 
O 4 HOH D 35 435 123 HOH TIP . 
O 4 HOH D 36 436 127 HOH TIP . 
O 4 HOH D 37 437 128 HOH TIP . 
O 4 HOH D 38 438 130 HOH TIP . 
O 4 HOH D 39 439 136 HOH TIP . 
O 4 HOH D 40 440 145 HOH TIP . 
O 4 HOH D 41 441 146 HOH TIP . 
O 4 HOH D 42 442 156 HOH TIP . 
O 4 HOH D 43 443 158 HOH TIP . 
O 4 HOH D 44 444 162 HOH TIP . 
O 4 HOH D 45 445 163 HOH TIP . 
O 4 HOH D 46 446 166 HOH TIP . 
O 4 HOH D 47 447 175 HOH TIP . 
O 4 HOH D 48 448 176 HOH TIP . 
O 4 HOH D 49 449 195 HOH TIP . 
O 4 HOH D 50 450 219 HOH TIP . 
O 4 HOH D 51 451 220 HOH TIP . 
O 4 HOH D 52 452 221 HOH TIP . 
O 4 HOH D 53 453 222 HOH TIP . 
O 4 HOH D 54 454 223 HOH TIP . 
O 4 HOH D 55 455 224 HOH TIP . 
O 4 HOH D 56 456 225 HOH TIP . 
O 4 HOH D 57 457 226 HOH TIP . 
O 4 HOH D 58 458 230 HOH TIP . 
O 4 HOH D 59 459 231 HOH TIP . 
O 4 HOH D 60 460 242 HOH TIP . 
O 4 HOH D 61 461 243 HOH TIP . 
O 4 HOH D 62 462 246 HOH TIP . 
O 4 HOH D 63 463 253 HOH TIP . 
O 4 HOH D 64 464 254 HOH TIP . 
O 4 HOH D 65 465 255 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAC FLC . . . K 3 54.735 -1.461 66.373 1 27.94 ? CAC FLC 302 D 1 
HETATM 2 C CA FLC . . . K 3 54.761 -0.764 67.741 1 32.85 ? CA FLC 302 D 1 
HETATM 3 C CB FLC . . . K 3 55.894 -1.245 68.713 1 37.25 ? CB FLC 302 D 1 
HETATM 4 C CBC FLC . . . K 3 57.282 -0.998 68.123 1 38.94 ? CBC FLC 302 D 1 
HETATM 5 C CG FLC . . . K 3 55.811 -0.459 70.063 1 38.32 ? CG FLC 302 D 1 
HETATM 6 C CGC FLC . . . K 3 54.635 -0.845 70.973 1 41.67 ? CGC FLC 302 D 1 
HETATM 7 O OA1 FLC . . . K 3 53.875 -1.158 65.576 1 24.44 ? OA1 FLC 302 D 1 
HETATM 8 O OA2 FLC . . . K 3 55.554 -2.313 66.064 1 25.64 ? OA2 FLC 302 D 1 
HETATM 9 O OB1 FLC . . . K 3 57.655 0.189 67.814 1 42.66 ? OB1 FLC 302 D 1 
HETATM 10 O OB2 FLC . . . K 3 58.083 -1.983 67.934 1 40.26 ? OB2 FLC 302 D 1 
HETATM 11 O OG1 FLC . . . K 3 53.827 -1.698 70.641 1 43.07 ? OG1 FLC 302 D 1 
HETATM 12 O OG2 FLC . . . K 3 54.495 -0.282 72.054 1 42.23 ? OG2 FLC 302 D 1 
HETATM 13 O OHB FLC . . . K 3 55.744 -2.659 68.953 1 35.62 ? OHB FLC 302 D 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           13 
#