data_3WF6 # _model_server_result.job_id i25tciX74yIEpmoF4O8PDg _model_server_result.datetime_utc '2024-10-19 03:55:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wf6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 3WF6 # _exptl.entry_id 3WF6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 316.36 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[4-(1H-indol-3-yl)-3,6-dihydropyridin-1(2H)-yl]-1H-pyrazolo[3,4-d]pyrimidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WF6 _cell.length_a 69.073 _cell.length_b 69.073 _cell.length_c 144.983 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WF6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 181 A HIS 251 1_555 A N TPO 182 A TPO 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C TPO 182 A TPO 252 1_555 A N PHE 183 A PHE 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A SG CYS 170 A CYS 240 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc2 A ND1 HIS 175 A HIS 245 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc3 A ND1 HIS 181 A HIS 251 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc4 A SG CYS 184 A CYS 254 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? # _chem_comp.formula 'C18 H16 N6' _chem_comp.formula_weight 316.36 _chem_comp.id FZ9 _chem_comp.mon_nstd_flag . _chem_comp.name 4-[4-(1H-indol-3-yl)-3,6-dihydropyridin-1(2H)-yl]-1H-pyrazolo[3,4-d]pyrimidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C13 FZ9 doub 83 n y C12 C11 FZ9 sing 84 n y C13 C14 FZ9 sing 85 n y C11 C10 FZ9 doub 86 n y C14 C15 FZ9 doub 87 n y C10 C15 FZ9 sing 88 n y C10 C09 FZ9 sing 89 n y C15 N16 FZ9 sing 90 n y C07 C06 FZ9 sing 91 n n C07 C08 FZ9 sing 92 n n N22 C21 FZ9 doub 93 n y N22 N23 FZ9 sing 94 n y C21 C20 FZ9 sing 95 n y C06 N05 FZ9 sing 96 n n C09 C08 FZ9 sing 97 n n C09 C17 FZ9 doub 98 n y N16 C17 FZ9 sing 99 n y C08 C18 FZ9 doub 100 n n N23 C24 FZ9 sing 101 n y C20 C24 FZ9 doub 102 n y C20 C04 FZ9 sing 103 n y N05 C04 FZ9 sing 104 n n N05 C19 FZ9 sing 105 n n C18 C19 FZ9 sing 106 n n C24 N01 FZ9 sing 107 n y C04 N03 FZ9 doub 108 n y N01 C02 FZ9 doub 109 n y N03 C02 FZ9 sing 110 n y C02 H1 FZ9 sing 111 n n C06 H2 FZ9 sing 112 n n C07 H3 FZ9 sing 113 n n C11 H4 FZ9 sing 114 n n C12 H5 FZ9 sing 115 n n C13 H6 FZ9 sing 116 n n C14 H7 FZ9 sing 117 n n N16 H8 FZ9 sing 118 n n C17 H9 FZ9 sing 119 n n C18 H10 FZ9 sing 120 n n C19 H11 FZ9 sing 121 n n C21 H12 FZ9 sing 122 n n N23 H13 FZ9 sing 123 n n C06 H14 FZ9 sing 124 n n C07 H15 FZ9 sing 125 n n C19 H16 FZ9 sing 126 n n # _atom_sites.entry_id 3WF6 _atom_sites.fract_transf_matrix[1][1] 0.014477 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014477 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006897 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 401 ZN ZN . C 3 FZ9 A 1 402 501 FZ9 FZ9 . D 4 HOH A 1 501 1 HOH HOH . D 4 HOH A 2 502 2 HOH HOH . D 4 HOH A 3 503 3 HOH HOH . D 4 HOH A 4 504 4 HOH HOH . D 4 HOH A 5 505 5 HOH HOH . D 4 HOH A 6 506 6 HOH HOH . D 4 HOH A 7 507 7 HOH HOH . D 4 HOH A 8 508 8 HOH HOH . D 4 HOH A 9 509 9 HOH HOH . D 4 HOH A 10 510 10 HOH HOH . D 4 HOH A 11 511 11 HOH HOH . D 4 HOH A 12 512 12 HOH HOH . D 4 HOH A 13 513 13 HOH HOH . D 4 HOH A 14 514 14 HOH HOH . D 4 HOH A 15 515 15 HOH HOH . D 4 HOH A 16 516 16 HOH HOH . D 4 HOH A 17 517 17 HOH HOH . D 4 HOH A 18 518 18 HOH HOH . D 4 HOH A 19 519 19 HOH HOH . D 4 HOH A 20 520 20 HOH HOH . D 4 HOH A 21 521 21 HOH HOH . D 4 HOH A 22 522 22 HOH HOH . D 4 HOH A 23 523 23 HOH HOH . D 4 HOH A 24 524 24 HOH HOH . D 4 HOH A 25 525 25 HOH HOH . D 4 HOH A 26 526 26 HOH HOH . D 4 HOH A 27 527 27 HOH HOH . D 4 HOH A 28 528 28 HOH HOH . D 4 HOH A 29 529 29 HOH HOH . D 4 HOH A 30 530 30 HOH HOH . D 4 HOH A 31 531 31 HOH HOH . D 4 HOH A 32 532 32 HOH HOH . D 4 HOH A 33 533 33 HOH HOH . D 4 HOH A 34 534 34 HOH HOH . D 4 HOH A 35 535 35 HOH HOH . D 4 HOH A 36 536 36 HOH HOH . D 4 HOH A 37 537 37 HOH HOH . D 4 HOH A 38 538 38 HOH HOH . D 4 HOH A 39 539 39 HOH HOH . D 4 HOH A 40 540 40 HOH HOH . D 4 HOH A 41 541 41 HOH HOH . D 4 HOH A 42 542 42 HOH HOH . D 4 HOH A 43 543 43 HOH HOH . D 4 HOH A 44 544 44 HOH HOH . D 4 HOH A 45 545 45 HOH HOH . D 4 HOH A 46 546 46 HOH HOH . D 4 HOH A 47 547 47 HOH HOH . D 4 HOH A 48 548 48 HOH HOH . D 4 HOH A 49 549 49 HOH HOH . D 4 HOH A 50 550 50 HOH HOH . D 4 HOH A 51 551 51 HOH HOH . D 4 HOH A 52 552 52 HOH HOH . D 4 HOH A 53 553 53 HOH HOH . D 4 HOH A 54 554 54 HOH HOH . D 4 HOH A 55 555 55 HOH HOH . D 4 HOH A 56 556 56 HOH HOH . D 4 HOH A 57 557 57 HOH HOH . D 4 HOH A 58 558 58 HOH HOH . D 4 HOH A 59 559 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 FZ9 . . . C 3 7.224 -13.308 15.094 1 40.46 ? N01 FZ9 402 A 1 HETATM 2 C C02 FZ9 . . . C 3 8.428 -13.424 15.652 1 40.11 ? C02 FZ9 402 A 1 HETATM 3 N N03 FZ9 . . . C 3 9.641 -13.262 15.104 1 48.21 ? N03 FZ9 402 A 1 HETATM 4 C C04 FZ9 . . . C 3 9.702 -12.948 13.806 1 46.92 ? C04 FZ9 402 A 1 HETATM 5 N N05 FZ9 . . . C 3 10.97 -12.778 13.223 1 48.24 ? N05 FZ9 402 A 1 HETATM 6 C C06 FZ9 . . . C 3 11.155 -12.382 11.772 1 49.69 ? C06 FZ9 402 A 1 HETATM 7 C C07 FZ9 . . . C 3 12.356 -11.596 11.469 1 48.74 ? C07 FZ9 402 A 1 HETATM 8 C C08 FZ9 . . . C 3 13.476 -11.707 12.181 1 56.85 ? C08 FZ9 402 A 1 HETATM 9 C C09 FZ9 . . . C 3 14.663 -10.926 11.897 1 48.28 ? C09 FZ9 402 A 1 HETATM 10 C C10 FZ9 . . . C 3 14.849 -9.806 11.008 1 54 ? C10 FZ9 402 A 1 HETATM 11 C C11 FZ9 . . . C 3 14.03 -9.096 10.116 1 62.41 ? C11 FZ9 402 A 1 HETATM 12 C C12 FZ9 . . . C 3 14.55 -8.045 9.392 1 67.85 ? C12 FZ9 402 A 1 HETATM 13 C C13 FZ9 . . . C 3 15.897 -7.662 9.517 1 60.46 ? C13 FZ9 402 A 1 HETATM 14 C C14 FZ9 . . . C 3 16.743 -8.338 10.361 1 62.28 ? C14 FZ9 402 A 1 HETATM 15 C C15 FZ9 . . . C 3 16.206 -9.407 11.101 1 61.98 ? C15 FZ9 402 A 1 HETATM 16 N N16 FZ9 . . . C 3 16.829 -10.24 12.034 1 55.89 ? N16 FZ9 402 A 1 HETATM 17 C C17 FZ9 . . . C 3 15.881 -11.155 12.505 1 44.47 ? C17 FZ9 402 A 1 HETATM 18 C C18 FZ9 . . . C 3 13.523 -12.677 13.31 1 59.01 ? C18 FZ9 402 A 1 HETATM 19 C C19 FZ9 . . . C 3 12.198 -12.887 14.033 1 45.93 ? C19 FZ9 402 A 1 HETATM 20 C C20 FZ9 . . . C 3 8.499 -12.793 13.059 1 42.76 ? C20 FZ9 402 A 1 HETATM 21 C C21 FZ9 . . . C 3 8.073 -12.5 11.728 1 40.23 ? C21 FZ9 402 A 1 HETATM 22 N N22 FZ9 . . . C 3 6.731 -12.507 11.645 1 45.44 ? N22 FZ9 402 A 1 HETATM 23 N N23 FZ9 . . . C 3 6.254 -12.807 12.884 1 35.53 ? N23 FZ9 402 A 1 HETATM 24 C C24 FZ9 . . . C 3 7.284 -12.995 13.774 1 38.16 ? C24 FZ9 402 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 24 #