data_3WFU
#
_model_server_result.job_id            O6rmoZX9rPz-FBo5VJFPQg 
_model_server_result.datetime_utc      '2024-11-24 10:55:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3wfu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1001}' 
#
_entry.id    3WFU 
#
_exptl.entry_id    3WFU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              612.604 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R,19R) cobalt tetradehydrocorrin' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.6 
_cell.angle_gamma         90 
_cell.entry_id            3WFU 
_cell.length_a            34.836 
_cell.length_b            28.72 
_cell.length_c            63.352 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3WFU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C33 H37 Co N4 O4 1' 
_chem_comp.formula_weight    612.604 
_chem_comp.id                J1R 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R,19R) cobalt tetradehydrocorrin' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1C CGD J1R doub 160 n n 
O2C CGD J1R sing 161 n n 
CGD CBD J1R sing 162 n n 
CBD CAC J1R sing 163 n n 
CAB C3B J1R sing 164 n n 
CAB CBB J1R sing 165 n n 
O2B CGB J1R doub 166 n n 
CAC C2C J1R sing 167 n n 
C3B C4B J1R sing 168 n y 
C3B C2B J1R doub 169 n y 
CHB C4B J1R doub 170 n n 
CHB C1C J1R sing 171 n n 
C2C C1C J1R sing 172 n n 
C2C C3C J1R doub 173 n n 
CMB C2B J1R sing 174 n n 
C4B NB J1R sing 175 n y 
C2B C1B J1R sing 176 n y 
C1C NC J1R doub 177 n n 
CBB CGB J1R sing 178 n n 
CGB O1B J1R sing 179 n n 
CMC C3C J1R sing 180 n n 
C3C C4C J1R sing 181 n n 
CAD C4D J1R sing 182 n n 
C1B NB J1R sing 183 n y 
C1B CHA J1R doub 184 n n 
NB CO J1R sing 185 n n 
NC C4C J1R sing 186 n n 
NC CO J1R sing 187 n n 
C4C CHC J1R doub 188 n n 
CHA C4A J1R sing 189 n n 
CO NA J1R sing 190 n n 
CO ND J1R sing 191 n n 
CHC C1D J1R sing 192 n n 
C4A NA J1R doub 193 n n 
C4A C3A J1R sing 194 n n 
NA C1A J1R sing 195 n n 
ND C1D J1R doub 196 n n 
ND C4D J1R sing 197 n n 
C1D C2D J1R sing 198 n n 
C4D C3D J1R sing 199 n n 
C4D C1A J1R sing 200 n n 
C3A C6A J1R sing 201 n n 
C3A C2A J1R doub 202 n n 
C2D C3D J1R doub 203 n n 
C2D C5D J1R sing 204 n n 
C3D C6D J1R sing 205 n n 
C1A C2A J1R sing 206 n n 
C1A CAA J1R sing 207 n n 
C2A C5A J1R sing 208 n n 
O1B H1 J1R sing 209 n n 
CBB H2 J1R sing 210 n n 
CBB H3 J1R sing 211 n n 
CAB H4 J1R sing 212 n n 
CAB H5 J1R sing 213 n n 
CMB H6 J1R sing 214 n n 
CMB H7 J1R sing 215 n n 
CMB H8 J1R sing 216 n n 
CHB H9 J1R sing 217 n n 
CHA H10 J1R sing 218 n n 
C6A H11 J1R sing 219 n n 
C6A H12 J1R sing 220 n n 
C6A H13 J1R sing 221 n n 
C5A H14 J1R sing 222 n n 
C5A H15 J1R sing 223 n n 
C5A H16 J1R sing 224 n n 
CAA H17 J1R sing 225 n n 
CAA H18 J1R sing 226 n n 
CAA H19 J1R sing 227 n n 
CAD H20 J1R sing 228 n n 
CAD H21 J1R sing 229 n n 
CAD H22 J1R sing 230 n n 
C6D H23 J1R sing 231 n n 
C6D H24 J1R sing 232 n n 
C6D H25 J1R sing 233 n n 
C5D H26 J1R sing 234 n n 
C5D H27 J1R sing 235 n n 
C5D H28 J1R sing 236 n n 
CHC H29 J1R sing 237 n n 
CMC H30 J1R sing 238 n n 
CMC H31 J1R sing 239 n n 
CMC H32 J1R sing 240 n n 
CAC H33 J1R sing 241 n n 
CAC H34 J1R sing 242 n n 
CBD H35 J1R sing 243 n n 
CBD H36 J1R sing 244 n n 
O2C H37 J1R sing 245 n n 
#
_atom_sites.entry_id                     3WFU 
_atom_sites.fract_transf_matrix[1][1]    0.028706 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008014 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.034819 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016388 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 J1R A 1 1001 1001 J1R CRC . 
C 3 J1S A 1 1002 1002 J1S CSC . 
D 4 SO4 A 1 1003 1156 SO4 SO4 . 
E 4 SO4 A 1 1004 1157 SO4 SO4 . 
F 5 HOH A 1 1101 1 HOH HOH . 
F 5 HOH A 2 1102 2 HOH HOH . 
F 5 HOH A 3 1103 3 HOH HOH . 
F 5 HOH A 4 1104 4 HOH HOH . 
F 5 HOH A 5 1105 5 HOH HOH . 
F 5 HOH A 6 1106 6 HOH HOH . 
F 5 HOH A 7 1107 7 HOH HOH . 
F 5 HOH A 8 1108 8 HOH HOH . 
F 5 HOH A 9 1109 9 HOH HOH . 
F 5 HOH A 10 1110 10 HOH HOH . 
F 5 HOH A 11 1111 11 HOH HOH . 
F 5 HOH A 12 1112 12 HOH HOH . 
F 5 HOH A 13 1113 13 HOH HOH . 
F 5 HOH A 14 1114 14 HOH HOH . 
F 5 HOH A 15 1115 15 HOH HOH . 
F 5 HOH A 16 1116 16 HOH HOH . 
F 5 HOH A 17 1117 17 HOH HOH . 
F 5 HOH A 18 1118 18 HOH HOH . 
F 5 HOH A 19 1119 19 HOH HOH . 
F 5 HOH A 20 1120 20 HOH HOH . 
F 5 HOH A 21 1121 21 HOH HOH . 
F 5 HOH A 22 1122 22 HOH HOH . 
F 5 HOH A 23 1123 23 HOH HOH . 
F 5 HOH A 24 1124 24 HOH HOH . 
F 5 HOH A 25 1125 25 HOH HOH . 
F 5 HOH A 26 1126 26 HOH HOH . 
F 5 HOH A 27 1127 27 HOH HOH . 
F 5 HOH A 28 1128 28 HOH HOH . 
F 5 HOH A 29 1129 29 HOH HOH . 
F 5 HOH A 30 1130 30 HOH HOH . 
F 5 HOH A 31 1131 31 HOH HOH . 
F 5 HOH A 32 1132 32 HOH HOH . 
F 5 HOH A 33 1133 33 HOH HOH . 
F 5 HOH A 34 1134 34 HOH HOH . 
F 5 HOH A 35 1135 35 HOH HOH . 
F 5 HOH A 36 1136 36 HOH HOH . 
F 5 HOH A 37 1137 37 HOH HOH . 
F 5 HOH A 38 1138 38 HOH HOH . 
F 5 HOH A 39 1139 39 HOH HOH . 
F 5 HOH A 40 1140 40 HOH HOH . 
F 5 HOH A 41 1141 41 HOH HOH . 
F 5 HOH A 42 1142 42 HOH HOH . 
F 5 HOH A 43 1143 43 HOH HOH . 
F 5 HOH A 44 1144 44 HOH HOH . 
F 5 HOH A 45 1145 45 HOH HOH . 
F 5 HOH A 46 1146 46 HOH HOH . 
F 5 HOH A 47 1147 47 HOH HOH . 
F 5 HOH A 48 1148 48 HOH HOH . 
F 5 HOH A 49 1149 49 HOH HOH . 
F 5 HOH A 50 1150 50 HOH HOH . 
F 5 HOH A 51 1151 51 HOH HOH . 
F 5 HOH A 52 1152 52 HOH HOH . 
F 5 HOH A 53 1153 53 HOH HOH . 
F 5 HOH A 54 1154 54 HOH HOH . 
F 5 HOH A 55 1155 55 HOH HOH . 
F 5 HOH A 56 1156 56 HOH HOH . 
F 5 HOH A 57 1157 57 HOH HOH . 
F 5 HOH A 58 1158 58 HOH HOH . 
F 5 HOH A 59 1159 59 HOH HOH . 
F 5 HOH A 60 1160 60 HOH HOH . 
F 5 HOH A 61 1161 61 HOH HOH . 
F 5 HOH A 62 1162 62 HOH HOH . 
F 5 HOH A 63 1163 63 HOH HOH . 
F 5 HOH A 64 1164 64 HOH HOH . 
F 5 HOH A 65 1165 65 HOH HOH . 
F 5 HOH A 66 1166 66 HOH HOH . 
F 5 HOH A 67 1167 67 HOH HOH . 
F 5 HOH A 68 1168 68 HOH HOH . 
F 5 HOH A 69 1169 69 HOH HOH . 
F 5 HOH A 70 1170 70 HOH HOH . 
F 5 HOH A 71 1171 71 HOH HOH . 
F 5 HOH A 72 1172 72 HOH HOH . 
F 5 HOH A 73 1173 73 HOH HOH . 
F 5 HOH A 74 1174 74 HOH HOH . 
F 5 HOH A 75 1175 75 HOH HOH . 
F 5 HOH A 76 1176 76 HOH HOH . 
F 5 HOH A 77 1177 77 HOH HOH . 
F 5 HOH A 78 1178 78 HOH HOH . 
F 5 HOH A 79 1179 79 HOH HOH . 
F 5 HOH A 80 1180 80 HOH HOH . 
F 5 HOH A 81 1181 81 HOH HOH . 
F 5 HOH A 82 1182 82 HOH HOH . 
F 5 HOH A 83 1183 83 HOH HOH . 
F 5 HOH A 84 1184 84 HOH HOH . 
F 5 HOH A 85 1185 85 HOH HOH . 
F 5 HOH A 86 1186 86 HOH HOH . 
F 5 HOH A 87 1187 87 HOH HOH . 
F 5 HOH A 88 1188 88 HOH HOH . 
F 5 HOH A 89 1189 89 HOH HOH . 
F 5 HOH A 90 1190 90 HOH HOH . 
F 5 HOH A 91 1191 91 HOH HOH . 
F 5 HOH A 92 1192 92 HOH HOH . 
F 5 HOH A 93 1193 93 HOH HOH . 
F 5 HOH A 94 1194 94 HOH HOH . 
F 5 HOH A 95 1195 95 HOH HOH . 
F 5 HOH A 96 1196 96 HOH HOH . 
F 5 HOH A 97 1197 97 HOH HOH . 
F 5 HOH A 98 1198 98 HOH HOH . 
F 5 HOH A 99 1199 99 HOH HOH . 
F 5 HOH A 100 1200 100 HOH HOH . 
F 5 HOH A 101 1201 101 HOH HOH . 
F 5 HOH A 102 1202 102 HOH HOH . 
F 5 HOH A 103 1203 103 HOH HOH . 
F 5 HOH A 104 1204 104 HOH HOH . 
F 5 HOH A 105 1205 105 HOH HOH . 
F 5 HOH A 106 1206 106 HOH HOH . 
F 5 HOH A 107 1207 107 HOH HOH . 
F 5 HOH A 108 1208 108 HOH HOH . 
F 5 HOH A 109 1209 109 HOH HOH . 
F 5 HOH A 110 1210 110 HOH HOH . 
F 5 HOH A 111 1211 111 HOH HOH . 
F 5 HOH A 112 1212 112 HOH HOH . 
F 5 HOH A 113 1213 113 HOH HOH . 
F 5 HOH A 114 1214 114 HOH HOH . 
F 5 HOH A 115 1215 115 HOH HOH . 
F 5 HOH A 116 1216 116 HOH HOH . 
F 5 HOH A 117 1217 117 HOH HOH . 
F 5 HOH A 118 1218 118 HOH HOH . 
F 5 HOH A 119 1219 119 HOH HOH . 
F 5 HOH A 120 1220 120 HOH HOH . 
F 5 HOH A 121 1221 121 HOH HOH . 
F 5 HOH A 122 1222 122 HOH HOH . 
F 5 HOH A 123 1223 123 HOH HOH . 
F 5 HOH A 124 1224 124 HOH HOH . 
F 5 HOH A 125 1225 125 HOH HOH . 
F 5 HOH A 126 1226 126 HOH HOH . 
F 5 HOH A 127 1227 127 HOH HOH . 
F 5 HOH A 128 1228 128 HOH HOH . 
F 5 HOH A 129 1229 129 HOH HOH . 
F 5 HOH A 130 1230 130 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1B J1R . A . B 2 10.334 8.673 15.349 0.65 22.09 ? O1B J1R 1001 A 1 
HETATM 2 C CGB J1R . A . B 2 10.751 8.77 14.182 0.65 20.58 ? CGB J1R 1001 A 1 
HETATM 3 O O2B J1R . A . B 2 10.103 9.281 13.18 0.65 30.34 ? O2B J1R 1001 A 1 
HETATM 4 C CBB J1R . A . B 2 12.151 8.154 14.077 0.65 20.88 ? CBB J1R 1001 A 1 
HETATM 5 C CAB J1R . A . B 2 12.086 7.052 13.009 0.65 14.74 ? CAB J1R 1001 A 1 
HETATM 6 C C3B J1R . A . B 2 11.907 5.68 13.629 0.65 12.25 ? C3B J1R 1001 A 1 
HETATM 7 C C2B J1R . A . B 2 12.879 4.777 13.996 0.65 10.81 ? C2B J1R 1001 A 1 
HETATM 8 C CMB J1R . A . B 2 14.365 4.93 13.892 0.65 12.38 ? CMB J1R 1001 A 1 
HETATM 9 C C1B J1R . A . B 2 12.211 3.661 14.502 0.65 11.22 ? C1B J1R 1001 A 1 
HETATM 10 N NB J1R . A . B 2 10.861 3.853 14.511 0.65 10.26 ? NB J1R 1001 A 1 
HETATM 11 C C4B J1R . A . B 2 10.725 5.052 13.925 0.65 11.83 ? C4B J1R 1001 A 1 
HETATM 12 C CHB J1R . A . B 2 9.374 5.592 13.685 0.65 12.17 ? CHB J1R 1001 A 1 
HETATM 13 C CHA J1R . A . B 2 12.909 2.443 14.985 0.65 11.09 ? CHA J1R 1001 A 1 
HETATM 14 C C4A J1R . A . B 2 12.221 1.31 15.542 0.65 10.91 ? C4A J1R 1001 A 1 
HETATM 15 N NA J1R . A . B 2 10.91 1.449 15.577 0.65 11.82 ? NA J1R 1001 A 1 
HETATM 16 CO CO J1R . A . B 2 9.574 2.584 15.082 0.65 12.65 ? CO J1R 1001 A 1 
HETATM 17 C C3A J1R . A . B 2 12.723 0.136 16.096 0.65 11.47 ? C3A J1R 1001 A 1 
HETATM 18 C C6A J1R . A . B 2 14.182 -0.219 16.148 0.65 12.09 ? C6A J1R 1001 A 1 
HETATM 19 C C2A J1R . A . B 2 11.588 -0.57 16.523 0.65 13.31 ? C2A J1R 1001 A 1 
HETATM 20 C C5A J1R . A . B 2 11.673 -1.922 17.221 0.65 15.64 ? C5A J1R 1001 A 1 
HETATM 21 C C1A J1R . A . B 2 10.348 0.289 16.394 0.65 15.7 ? C1A J1R 1001 A 1 
HETATM 22 C CAA J1R . A . B 2 10.037 0.703 17.863 0.65 15.67 ? CAA J1R 1001 A 1 
HETATM 23 C C4D J1R . A . B 2 9.018 -0.045 15.775 0.65 17.75 ? C4D J1R 1001 A 1 
HETATM 24 N ND J1R . A . B 2 8.334 1.279 15.606 0.65 16.26 ? ND J1R 1001 A 1 
HETATM 25 C CAD J1R . A . B 2 9.383 -0.727 14.433 0.65 14.14 ? CAD J1R 1001 A 1 
HETATM 26 C C3D J1R . A . B 2 7.892 -0.88 16.296 0.65 16.03 ? C3D J1R 1001 A 1 
HETATM 27 C C6D J1R . A . B 2 7.972 -2.339 16.69 0.65 16.41 ? C6D J1R 1001 A 1 
HETATM 28 C C2D J1R . A . B 2 6.676 -0.21 16.167 0.65 15 ? C2D J1R 1001 A 1 
HETATM 29 C C5D J1R . A . B 2 5.282 -0.704 16.386 0.65 16.26 ? C5D J1R 1001 A 1 
HETATM 30 C C1D J1R . A . B 2 7.034 1.09 15.719 0.65 14.88 ? C1D J1R 1001 A 1 
HETATM 31 C CHC J1R . A . B 2 6.235 2.279 15.424 0.65 15.1 ? CHC J1R 1001 A 1 
HETATM 32 C C4C J1R . A . B 2 6.798 3.52 14.803 0.65 14.56 ? C4C J1R 1001 A 1 
HETATM 33 C C3C J1R . A . B 2 6.012 4.559 14.346 0.65 15.5 ? C3C J1R 1001 A 1 
HETATM 34 C CMC J1R . A . B 2 4.497 4.69 14.337 0.65 15.82 ? CMC J1R 1001 A 1 
HETATM 35 N NC J1R . A . B 2 8.141 3.726 14.594 0.65 13.11 ? NC J1R 1001 A 1 
HETATM 36 C C1C J1R . A . B 2 8.14 4.941 14.034 0.65 11.72 ? C1C J1R 1001 A 1 
HETATM 37 C C2C J1R . A . B 2 6.907 5.477 13.826 0.65 13.79 ? C2C J1R 1001 A 1 
HETATM 38 C CAC J1R . A . B 2 6.588 6.81 13.186 0.65 19.96 ? CAC J1R 1001 A 1 
HETATM 39 C CBD J1R . A . B 2 6.523 6.577 11.663 0.65 25.89 ? CBD J1R 1001 A 1 
HETATM 40 C CGD J1R . A . B 2 6.177 7.778 10.801 0.65 28.66 ? CGD J1R 1001 A 1 
HETATM 41 O O2C J1R . A . B 2 4.983 8.184 10.796 0.65 29.64 ? O2C J1R 1001 A 1 
HETATM 42 O O1C J1R . A . B 2 7.095 8.275 10.103 0.65 32.36 ? O1C J1R 1001 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           42 
#