data_3WFW # _model_server_result.job_id ZzzrrOs5UY-dgy3RSMXEUA _model_server_result.datetime_utc '2025-03-13 16:57:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wfw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 3WFW # _exptl.entry_id 3WFW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.17 _cell.angle_gamma 90 _cell.entry_id 3WFW _cell.length_a 67.24 _cell.length_b 54.4 _cell.length_c 44.71 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WFW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 54.78879 0 42.941256 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 81 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 81 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.117 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 306 n n C1 H11 MPD sing 307 n n C1 H12 MPD sing 308 n n C1 H13 MPD sing 309 n n C2 O2 MPD sing 310 n n C2 CM MPD sing 311 n n C2 C3 MPD sing 312 n n O2 HO2 MPD sing 313 n n CM HM1 MPD sing 314 n n CM HM2 MPD sing 315 n n CM HM3 MPD sing 316 n n C3 C4 MPD sing 317 n n C3 H31 MPD sing 318 n n C3 H32 MPD sing 319 n n C4 O4 MPD sing 320 n n C4 C5 MPD sing 321 n n C4 H4 MPD sing 322 n n O4 HO4 MPD sing 323 n n C5 H51 MPD sing 324 n n C5 H52 MPD sing 325 n n C5 H53 MPD sing 326 n n # _atom_sites.entry_id 3WFW _atom_sites.fract_transf_matrix[1][1] 0.014872 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004313 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018382 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023288 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 141 HEM HEM . C 3 MPD A 1 202 142 MPD MPD . D 3 MPD A 1 203 143 MPD MPD . E 4 HOH A 1 301 201 HOH HOH . E 4 HOH A 2 302 202 HOH HOH . E 4 HOH A 3 303 203 HOH HOH . E 4 HOH A 4 304 204 HOH HOH . E 4 HOH A 5 305 205 HOH HOH . E 4 HOH A 6 306 206 HOH HOH . E 4 HOH A 7 307 207 HOH HOH . E 4 HOH A 8 308 208 HOH HOH . E 4 HOH A 9 309 209 HOH HOH . E 4 HOH A 10 310 210 HOH HOH . E 4 HOH A 11 311 211 HOH HOH . E 4 HOH A 12 312 212 HOH HOH . E 4 HOH A 13 313 213 HOH HOH . E 4 HOH A 14 314 214 HOH HOH . E 4 HOH A 15 315 215 HOH HOH . E 4 HOH A 16 316 216 HOH HOH . E 4 HOH A 17 317 217 HOH HOH . E 4 HOH A 18 318 218 HOH HOH . E 4 HOH A 19 319 219 HOH HOH . E 4 HOH A 20 320 220 HOH HOH . E 4 HOH A 21 321 221 HOH HOH . E 4 HOH A 22 322 222 HOH HOH . E 4 HOH A 23 323 223 HOH HOH . E 4 HOH A 24 324 224 HOH HOH . E 4 HOH A 25 325 225 HOH HOH . E 4 HOH A 26 326 226 HOH HOH . E 4 HOH A 27 327 227 HOH HOH . E 4 HOH A 28 328 228 HOH HOH . E 4 HOH A 29 329 229 HOH HOH . E 4 HOH A 30 330 230 HOH HOH . E 4 HOH A 31 331 231 HOH HOH . E 4 HOH A 32 332 232 HOH HOH . E 4 HOH A 33 333 233 HOH HOH . E 4 HOH A 34 334 234 HOH HOH . E 4 HOH A 35 335 235 HOH HOH . E 4 HOH A 36 336 236 HOH HOH . E 4 HOH A 37 337 237 HOH HOH . E 4 HOH A 38 338 238 HOH HOH . E 4 HOH A 39 339 239 HOH HOH . E 4 HOH A 40 340 240 HOH HOH . E 4 HOH A 41 341 241 HOH HOH . E 4 HOH A 42 342 242 HOH HOH . E 4 HOH A 43 343 243 HOH HOH . E 4 HOH A 44 344 244 HOH HOH . E 4 HOH A 45 345 245 HOH HOH . E 4 HOH A 46 346 246 HOH HOH . E 4 HOH A 47 347 247 HOH HOH . E 4 HOH A 48 348 248 HOH HOH . E 4 HOH A 49 349 249 HOH HOH . E 4 HOH A 50 350 250 HOH HOH . E 4 HOH A 51 351 251 HOH HOH . E 4 HOH A 52 352 252 HOH HOH . E 4 HOH A 53 353 253 HOH HOH . E 4 HOH A 54 354 254 HOH HOH . E 4 HOH A 55 355 255 HOH HOH . E 4 HOH A 56 356 256 HOH HOH . E 4 HOH A 57 357 257 HOH HOH . E 4 HOH A 58 358 258 HOH HOH . E 4 HOH A 59 359 259 HOH HOH . E 4 HOH A 60 360 260 HOH HOH . E 4 HOH A 61 361 261 HOH HOH . E 4 HOH A 62 362 262 HOH HOH . E 4 HOH A 63 363 263 HOH HOH . E 4 HOH A 64 364 264 HOH HOH . E 4 HOH A 65 365 265 HOH HOH . E 4 HOH A 66 366 266 HOH HOH . E 4 HOH A 67 367 267 HOH HOH . E 4 HOH A 68 368 268 HOH HOH . E 4 HOH A 69 369 269 HOH HOH . E 4 HOH A 70 370 270 HOH HOH . E 4 HOH A 71 371 271 HOH HOH . E 4 HOH A 72 372 272 HOH HOH . E 4 HOH A 73 373 273 HOH HOH . E 4 HOH A 74 374 274 HOH HOH . E 4 HOH A 75 375 275 HOH HOH . E 4 HOH A 76 376 276 HOH HOH . E 4 HOH A 77 377 277 HOH HOH . E 4 HOH A 78 378 278 HOH HOH . E 4 HOH A 79 379 279 HOH HOH . E 4 HOH A 80 380 280 HOH HOH . E 4 HOH A 81 381 281 HOH HOH . E 4 HOH A 82 382 282 HOH HOH . E 4 HOH A 83 383 283 HOH HOH . E 4 HOH A 84 384 284 HOH HOH . E 4 HOH A 85 385 285 HOH HOH . E 4 HOH A 86 386 286 HOH HOH . E 4 HOH A 87 387 287 HOH HOH . E 4 HOH A 88 388 288 HOH HOH . E 4 HOH A 89 389 289 HOH HOH . E 4 HOH A 90 390 290 HOH HOH . E 4 HOH A 91 391 291 HOH HOH . E 4 HOH A 92 392 292 HOH HOH . E 4 HOH A 93 393 293 HOH HOH . E 4 HOH A 94 394 294 HOH HOH . E 4 HOH A 95 395 295 HOH HOH . E 4 HOH A 96 396 296 HOH HOH . E 4 HOH A 97 397 297 HOH HOH . E 4 HOH A 98 398 298 HOH HOH . E 4 HOH A 99 399 299 HOH HOH . E 4 HOH A 100 400 300 HOH HOH . E 4 HOH A 101 401 301 HOH HOH . E 4 HOH A 102 402 302 HOH HOH . E 4 HOH A 103 403 303 HOH HOH . E 4 HOH A 104 404 304 HOH HOH . E 4 HOH A 105 405 305 HOH HOH . E 4 HOH A 106 406 306 HOH HOH . E 4 HOH A 107 407 307 HOH HOH . E 4 HOH A 108 408 308 HOH HOH . E 4 HOH A 109 409 309 HOH HOH . E 4 HOH A 110 410 310 HOH HOH . E 4 HOH A 111 411 311 HOH HOH . E 4 HOH A 112 412 312 HOH HOH . E 4 HOH A 113 413 313 HOH HOH . E 4 HOH A 114 414 314 HOH HOH . E 4 HOH A 115 415 315 HOH HOH . E 4 HOH A 116 416 316 HOH HOH . E 4 HOH A 117 417 317 HOH HOH . E 4 HOH A 118 418 318 HOH HOH . E 4 HOH A 119 419 319 HOH HOH . E 4 HOH A 120 420 320 HOH HOH . E 4 HOH A 121 421 321 HOH HOH . E 4 HOH A 122 422 322 HOH HOH . E 4 HOH A 123 423 323 HOH HOH . E 4 HOH A 124 424 324 HOH HOH . E 4 HOH A 125 425 325 HOH HOH . E 4 HOH A 126 426 326 HOH HOH . E 4 HOH A 127 427 327 HOH HOH . E 4 HOH A 128 428 328 HOH HOH . E 4 HOH A 129 429 329 HOH HOH . E 4 HOH A 130 430 330 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 3 29.4 -4.548 24.253 1 14.84 ? C1 MPD 202 A 1 HETATM 2 C C2 MPD . . . C 3 30.574 -3.639 24.622 1 14.9 ? C2 MPD 202 A 1 HETATM 3 O O2 MPD . . . C 3 30.25 -2.367 23.989 1 18.09 ? O2 MPD 202 A 1 HETATM 4 C CM MPD . . . C 3 30.675 -3.445 26.134 1 15.35 ? CM MPD 202 A 1 HETATM 5 C C3 MPD . . . C 3 31.82 -4.33 24.085 1 17.09 ? C3 MPD 202 A 1 HETATM 6 C C4 MPD . . . C 3 32.946 -3.492 23.479 1 25.46 ? C4 MPD 202 A 1 HETATM 7 O O4 MPD . . . C 3 32.892 -2.137 23.888 1 17.03 ? O4 MPD 202 A 1 HETATM 8 C C5 MPD . . . C 3 34.293 -4.136 23.762 1 18.74 ? C5 MPD 202 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #