data_3WG8 # _model_server_result.job_id s2AP8jfW3bm_sWaGU5vSLQ _model_server_result.datetime_utc '2025-03-05 18:16:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wg8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 3WG8 # _exptl.entry_id 3WG8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 380.541 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2Z,4E)-5-[(1S)-3-(hexylsulfanyl)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3WG8 _cell.length_a 66.932 _cell.length_b 66.932 _cell.length_c 78.237 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WG8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -26.079 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H32 O4 S' _chem_comp.formula_weight 380.541 _chem_comp.id 6AS _chem_comp.mon_nstd_flag . _chem_comp.name '(2Z,4E)-5-[(1S)-3-(hexylsulfanyl)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA6 CA5 6AS sing 1 n n CA5 CA4 6AS sing 2 n n CA4 CA3 6AS sing 3 n n CA2 CA3 6AS sing 4 n n CA2 CA1 6AS sing 5 n n C6 C3 6AS sing 6 n n CA1 S 6AS sing 7 n n O4' C4' 6AS doub 8 n n C3 C2 6AS doub 9 z n C3 C4 6AS sing 10 n n C4' C5' 6AS sing 11 n n C4' C3' 6AS sing 12 n n C2 C1 6AS sing 13 n n S C3' 6AS sing 14 n n C5' C6' 6AS sing 15 n n C3' C2' 6AS doub 16 n n C5 C4 6AS doub 17 e n C5 C1' 6AS sing 18 n n C2' C1' 6AS sing 19 n n C2' C7' 6AS sing 20 n n C1 O11 6AS doub 21 n n C1 O12 6AS sing 22 n n C1' C6' 6AS sing 23 n n C1' O1' 6AS sing 24 n n C6' C9' 6AS sing 25 n n C6' C8' 6AS sing 26 n n O12 H1 6AS sing 27 n n C2 H2 6AS sing 28 n n C6 H3 6AS sing 29 n n C6 H4 6AS sing 30 n n C6 H5 6AS sing 31 n n C4 H6 6AS sing 32 n n C5 H7 6AS sing 33 n n C7' H8 6AS sing 34 n n C7' H9 6AS sing 35 n n C7' H10 6AS sing 36 n n O1' H11 6AS sing 37 n n C8' H12 6AS sing 38 n n C8' H13 6AS sing 39 n n C8' H14 6AS sing 40 n n C9' H15 6AS sing 41 n n C9' H16 6AS sing 42 n n C9' H17 6AS sing 43 n n C5' H18 6AS sing 44 n n C5' H19 6AS sing 45 n n CA1 H20 6AS sing 46 n n CA1 H21 6AS sing 47 n n CA2 H22 6AS sing 48 n n CA2 H23 6AS sing 49 n n CA3 H24 6AS sing 50 n n CA3 H25 6AS sing 51 n n CA4 H26 6AS sing 52 n n CA4 H27 6AS sing 53 n n CA5 H28 6AS sing 54 n n CA5 H29 6AS sing 55 n n CA6 H30 6AS sing 56 n n CA6 H31 6AS sing 57 n n CA6 H32 6AS sing 58 n n # _atom_sites.entry_id 3WG8 _atom_sites.fract_transf_matrix[1][1] 0.014941 _atom_sites.fract_transf_matrix[1][2] 0.008626 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017252 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012782 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6AS A 1 201 1 6AS AS6 . C 3 HOH A 1 301 1 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 3 HOH HOH . C 3 HOH A 4 304 4 HOH HOH . C 3 HOH A 5 305 5 HOH HOH . C 3 HOH A 6 306 6 HOH HOH . C 3 HOH A 7 307 7 HOH HOH . C 3 HOH A 8 308 8 HOH HOH . C 3 HOH A 9 309 9 HOH HOH . C 3 HOH A 10 310 11 HOH HOH . C 3 HOH A 11 311 12 HOH HOH . C 3 HOH A 12 312 14 HOH HOH . C 3 HOH A 13 313 15 HOH HOH . C 3 HOH A 14 314 16 HOH HOH . C 3 HOH A 15 315 18 HOH HOH . C 3 HOH A 16 316 19 HOH HOH . C 3 HOH A 17 317 20 HOH HOH . C 3 HOH A 18 318 21 HOH HOH . C 3 HOH A 19 319 22 HOH HOH . C 3 HOH A 20 320 23 HOH HOH . C 3 HOH A 21 321 24 HOH HOH . C 3 HOH A 22 322 25 HOH HOH . C 3 HOH A 23 323 26 HOH HOH . C 3 HOH A 24 324 27 HOH HOH . C 3 HOH A 25 325 28 HOH HOH . C 3 HOH A 26 326 29 HOH HOH . C 3 HOH A 27 327 32 HOH HOH . C 3 HOH A 28 328 33 HOH HOH . C 3 HOH A 29 329 34 HOH HOH . C 3 HOH A 30 330 37 HOH HOH . C 3 HOH A 31 331 38 HOH HOH . C 3 HOH A 32 332 39 HOH HOH . C 3 HOH A 33 333 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O11 6AS . . . B 2 -16.272 -2.717 2.198 1 42.73 ? O11 6AS 201 A 1 HETATM 2 C C1 6AS . . . B 2 -15.211 -2.043 2.06 1 39.43 ? C1 6AS 201 A 1 HETATM 3 O O12 6AS . . . B 2 -14.435 -1.861 3.002 1 39.36 ? O12 6AS 201 A 1 HETATM 4 C C2 6AS . . . B 2 -14.848 -1.553 0.713 1 36.31 ? C2 6AS 201 A 1 HETATM 5 C C3 6AS . . . B 2 -13.666 -0.714 0.481 1 37.63 ? C3 6AS 201 A 1 HETATM 6 C C6 6AS . . . B 2 -13.429 -0.211 -0.924 1 37.83 ? C6 6AS 201 A 1 HETATM 7 C C4 6AS . . . B 2 -12.676 -0.433 1.578 1 37.95 ? C4 6AS 201 A 1 HETATM 8 C C5 6AS . . . B 2 -11.503 0.422 1.256 1 38.73 ? C5 6AS 201 A 1 HETATM 9 C C1' 6AS . . . B 2 -10.618 0.796 2.272 1 40.94 ? C1' 6AS 201 A 1 HETATM 10 C C2' 6AS . . . B 2 -9.337 0.234 2.018 1 41.29 ? C2' 6AS 201 A 1 HETATM 11 C C7' 6AS . . . B 2 -8.974 -1.043 2.61 1 37.38 ? C7' 6AS 201 A 1 HETATM 12 O O1' 6AS . . . B 2 -11.128 0.346 3.514 1 37.62 ? O1' 6AS 201 A 1 HETATM 13 C C6' 6AS . . . B 2 -10.604 2.302 2.288 1 41.84 ? C6' 6AS 201 A 1 HETATM 14 C C8' 6AS . . . B 2 -9.683 2.807 3.432 1 44.66 ? C8' 6AS 201 A 1 HETATM 15 C C9' 6AS . . . B 2 -12.046 2.894 2.513 1 41.27 ? C9' 6AS 201 A 1 HETATM 16 C C5' 6AS . . . B 2 -10.123 2.808 0.892 1 44.61 ? C5' 6AS 201 A 1 HETATM 17 C C4' 6AS . . . B 2 -8.867 2.172 0.583 1 45.08 ? C4' 6AS 201 A 1 HETATM 18 O O4' 6AS . . . B 2 -8.052 2.77 -0.143 1 44.67 ? O4' 6AS 201 A 1 HETATM 19 C C3' 6AS . . . B 2 -8.487 0.955 1.18 1 42.1 ? C3' 6AS 201 A 1 HETATM 20 S S 6AS . . . B 2 -6.835 0.3 0.831 1 50 ? S 6AS 201 A 1 HETATM 21 C CA1 6AS . . . B 2 -7.25 -0.582 -0.723 1 51.76 ? CA1 6AS 201 A 1 HETATM 22 C CA2 6AS . . . B 2 -6.072 -0.737 -1.655 1 49.22 ? CA2 6AS 201 A 1 HETATM 23 C CA3 6AS . . . B 2 -5.489 -2.058 -1.247 1 46.14 ? CA3 6AS 201 A 1 HETATM 24 C CA4 6AS . . . B 2 -5.468 -3.06 -2.397 1 47.09 ? CA4 6AS 201 A 1 HETATM 25 C CA5 6AS . . . B 2 -4.025 -3.151 -2.845 1 46.94 ? CA5 6AS 201 A 1 HETATM 26 C CA6 6AS . . . B 2 -3.766 -1.992 -3.832 1 48.79 ? CA6 6AS 201 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #