data_3WHB
#
_model_server_result.job_id            iZ-vteidCLzo86Oxzmt5Qg 
_model_server_result.datetime_utc      '2024-11-28 09:08:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3whb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    3WHB 
#
_exptl.entry_id    3WHB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              949.837 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECYL-COA 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3WHB 
_cell.length_a            56.167 
_cell.length_b            66.105 
_cell.length_c            99.029 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3WHB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C33 H58 N7 O17 P3 S' 
_chem_comp.formula_weight    949.837 
_chem_comp.id                DCC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECYL-COA 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 N3 DCC doub 70 n y 
C2 N1 DCC sing 71 n y 
C2 H2 DCC sing 72 n n 
C4 C5 DCC doub 73 n y 
C4 N9 DCC sing 74 n y 
C4 N3 DCC sing 75 n y 
C5 C6 DCC sing 76 n y 
C5 N7 DCC sing 77 n y 
C6 N1 DCC doub 78 n y 
C6 N6 DCC sing 79 n n 
C8 N9 DCC sing 80 n y 
C8 N7 DCC doub 81 n y 
C8 H8 DCC sing 82 n n 
C10 C11 DCC sing 83 n n 
C10 CA9 DCC sing 84 n n 
C10 H101 DCC sing 85 n n 
C10 H102 DCC sing 86 n n 
C11 C12 DCC sing 87 n n 
C11 H111 DCC sing 88 n n 
C11 H112 DCC sing 89 n n 
C12 H121 DCC sing 90 n n 
C12 H122 DCC sing 91 n n 
C12 H123 DCC sing 92 n n 
N9 C1' DCC sing 93 n n 
N6 HN61 DCC sing 94 n n 
N6 HN62 DCC sing 95 n n 
C1' C2' DCC sing 96 n n 
C1' O4' DCC sing 97 n n 
C1' H1' DCC sing 98 n n 
C2' O2' DCC sing 99 n n 
C2' C3' DCC sing 100 n n 
C2' H2' DCC sing 101 n n 
O2' H1 DCC sing 102 n n 
C3' O3' DCC sing 103 n n 
C3' C4' DCC sing 104 n n 
C3' H3' DCC sing 105 n n 
O3' P3 DCC sing 106 n n 
C4' O4' DCC sing 107 n n 
C4' C5' DCC sing 108 n n 
C4' H4' DCC sing 109 n n 
C5' O5' DCC sing 110 n n 
C5' "H5'1" DCC sing 111 n n 
C5' "H5'2" DCC sing 112 n n 
O5' P1 DCC sing 113 n n 
P1 O11 DCC doub 114 n n 
P1 O12 DCC sing 115 n n 
P1 O6 DCC sing 116 n n 
O12 H12 DCC sing 117 n n 
O6 P2 DCC sing 118 n n 
P2 O21 DCC doub 119 n n 
P2 O22 DCC sing 120 n n 
P2 O7 DCC sing 121 n n 
O22 H22 DCC sing 122 n n 
O7 CPA DCC sing 123 n n 
CPA CPB DCC sing 124 n n 
CPA HPA1 DCC sing 125 n n 
CPA HPA2 DCC sing 126 n n 
CPB CP8 DCC sing 127 n n 
CPB CP7 DCC sing 128 n n 
CPB CP9 DCC sing 129 n n 
CP8 OP3 DCC sing 130 n n 
CP8 CP6 DCC sing 131 n n 
CP8 HP8 DCC sing 132 n n 
CP7 HP71 DCC sing 133 n n 
CP7 HP72 DCC sing 134 n n 
CP7 HP73 DCC sing 135 n n 
CP9 HP91 DCC sing 136 n n 
CP9 HP92 DCC sing 137 n n 
CP9 HP93 DCC sing 138 n n 
OP3 HP3 DCC sing 139 n n 
CP6 OP2 DCC doub 140 n n 
CP6 NP2 DCC sing 141 n n 
NP2 CP5 DCC sing 142 n n 
NP2 HP2 DCC sing 143 n n 
CP5 CP4 DCC sing 144 n n 
CP5 HP51 DCC sing 145 n n 
CP5 HP52 DCC sing 146 n n 
CP4 CP3 DCC sing 147 n n 
CP4 HP41 DCC sing 148 n n 
CP4 HP42 DCC sing 149 n n 
CP3 OP1 DCC doub 150 n n 
CP3 NP1 DCC sing 151 n n 
NP1 CP2 DCC sing 152 n n 
NP1 HP1 DCC sing 153 n n 
CP2 CP1 DCC sing 154 n n 
CP2 HP21 DCC sing 155 n n 
CP2 HP22 DCC sing 156 n n 
CP1 S DCC sing 157 n n 
CP1 HP11 DCC sing 158 n n 
CP1 HP12 DCC sing 159 n n 
S CA1 DCC sing 160 n n 
P3 O31 DCC doub 161 n n 
P3 O32 DCC sing 162 n n 
P3 O33 DCC sing 163 n n 
O32 H32 DCC sing 164 n n 
O33 H33 DCC sing 165 n n 
CA1 CA2 DCC sing 166 n n 
CA1 OA1 DCC doub 167 n n 
CA2 CA3 DCC sing 168 n n 
CA2 HA21 DCC sing 169 n n 
CA2 HA22 DCC sing 170 n n 
CA3 CA4 DCC sing 171 n n 
CA3 HA31 DCC sing 172 n n 
CA3 HA32 DCC sing 173 n n 
CA4 CA5 DCC sing 174 n n 
CA4 HA41 DCC sing 175 n n 
CA4 HA42 DCC sing 176 n n 
CA5 CA6 DCC sing 177 n n 
CA5 HA51 DCC sing 178 n n 
CA5 HA52 DCC sing 179 n n 
CA6 CA7 DCC sing 180 n n 
CA6 HA61 DCC sing 181 n n 
CA6 HA62 DCC sing 182 n n 
CA7 CA8 DCC sing 183 n n 
CA7 HA71 DCC sing 184 n n 
CA7 HA72 DCC sing 185 n n 
CA8 CA9 DCC sing 186 n n 
CA8 HA81 DCC sing 187 n n 
CA8 HA82 DCC sing 188 n n 
CA9 HA91 DCC sing 189 n n 
CA9 HA92 DCC sing 190 n n 
#
_atom_sites.entry_id                     3WHB 
_atom_sites.fract_transf_matrix[1][1]    0.017804 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015127 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010098 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DCC A 1 201 201 DCC DCC . 
D 3 HOH A 1 301 301 HOH HOH . 
D 3 HOH A 2 302 302 HOH HOH . 
D 3 HOH A 3 303 303 HOH HOH . 
D 3 HOH A 4 304 304 HOH HOH . 
D 3 HOH A 5 305 305 HOH HOH . 
D 3 HOH A 6 306 306 HOH HOH . 
D 3 HOH A 7 307 307 HOH HOH . 
D 3 HOH A 8 308 308 HOH HOH . 
D 3 HOH A 9 309 309 HOH HOH . 
D 3 HOH A 10 310 310 HOH HOH . 
D 3 HOH A 11 311 311 HOH HOH . 
D 3 HOH A 12 312 312 HOH HOH . 
D 3 HOH A 13 313 313 HOH HOH . 
D 3 HOH A 14 314 314 HOH HOH . 
D 3 HOH A 15 315 315 HOH HOH . 
D 3 HOH A 16 316 316 HOH HOH . 
D 3 HOH A 17 317 317 HOH HOH . 
D 3 HOH A 18 318 318 HOH HOH . 
D 3 HOH A 19 319 319 HOH HOH . 
D 3 HOH A 20 320 320 HOH HOH . 
D 3 HOH A 21 321 321 HOH HOH . 
E 3 HOH B 1 201 331 HOH HOH . 
E 3 HOH B 2 202 332 HOH HOH . 
E 3 HOH B 3 203 333 HOH HOH . 
E 3 HOH B 4 204 334 HOH HOH . 
E 3 HOH B 5 205 335 HOH HOH . 
E 3 HOH B 6 206 336 HOH HOH . 
E 3 HOH B 7 207 337 HOH HOH . 
E 3 HOH B 8 208 338 HOH HOH . 
E 3 HOH B 9 209 339 HOH HOH . 
E 3 HOH B 10 210 340 HOH HOH . 
E 3 HOH B 11 211 341 HOH HOH . 
E 3 HOH B 12 212 342 HOH HOH . 
E 3 HOH B 13 213 343 HOH HOH . 
E 3 HOH B 14 214 344 HOH HOH . 
E 3 HOH B 15 215 345 HOH HOH . 
E 3 HOH B 16 216 346 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 DCC . . . C 2 26.988 55.158 9.232 0.5 38.4 ? C2 DCC 201 A 1 
HETATM 2 C C4 DCC . . . C 2 27.102 52.81 9.416 0.5 38.11 ? C4 DCC 201 A 1 
HETATM 3 C C5 DCC . . . C 2 25.632 52.764 9.45 0.5 37.23 ? C5 DCC 201 A 1 
HETATM 4 C C6 DCC . . . C 2 24.906 54.052 9.365 0.5 37.31 ? C6 DCC 201 A 1 
HETATM 5 C C8 DCC . . . C 2 26.432 50.741 9.597 0.5 37.37 ? C8 DCC 201 A 1 
HETATM 6 C C10 DCC . . . C 2 13.795 35.557 6.982 1 47.89 ? C10 DCC 201 A 1 
HETATM 7 C C11 DCC . . . C 2 13.229 34.31 7.656 1 48.09 ? C11 DCC 201 A 1 
HETATM 8 C C12 DCC . . . C 2 14.269 33.223 7.829 1 48.47 ? C12 DCC 201 A 1 
HETATM 9 N N9 DCC . . . C 2 27.515 51.539 9.516 0.5 38.29 ? N9 DCC 201 A 1 
HETATM 10 N N7 DCC . . . C 2 25.286 51.468 9.564 0.5 36.86 ? N7 DCC 201 A 1 
HETATM 11 N N3 DCC . . . C 2 27.711 54.021 9.309 0.5 38.87 ? N3 DCC 201 A 1 
HETATM 12 N N1 DCC . . . C 2 25.64 55.188 9.257 0.5 37.95 ? N1 DCC 201 A 1 
HETATM 13 N N6 DCC . . . C 2 23.553 54.074 9.397 0.5 35.66 ? N6 DCC 201 A 1 
HETATM 14 C C1' DCC . . . C 2 28.929 51.088 9.507 0.5 38.97 ? C1' DCC 201 A 1 
HETATM 15 C C2' DCC . . . C 2 29.213 50.017 10.544 0.5 39.38 ? C2' DCC 201 A 1 
HETATM 16 O O2' DCC . . . C 2 29.777 50.575 11.727 0.5 40.28 ? O2' DCC 201 A 1 
HETATM 17 C C3' DCC . . . C 2 30.257 49.141 9.908 0.5 39.62 ? C3' DCC 201 A 1 
HETATM 18 O O3' DCC . . . C 2 31.518 49.692 10.276 0.5 41.68 ? O3' DCC 201 A 1 
HETATM 19 C C4' DCC . . . C 2 30.003 49.297 8.422 0.5 39.08 ? C4' DCC 201 A 1 
HETATM 20 O O4' DCC . . . C 2 29.209 50.473 8.251 0.5 38.78 ? O4' DCC 201 A 1 
HETATM 21 C C5' DCC . . . C 2 29.236 48.097 7.882 0.5 38.11 ? C5' DCC 201 A 1 
HETATM 22 O O5' DCC . . . C 2 28.352 47.615 8.893 0.5 37.33 ? O5' DCC 201 A 1 
HETATM 23 P P1 DCC . . . C 2 26.819 47.268 8.563 0.5 35.44 ? P1 DCC 201 A 1 
HETATM 24 O O11 DCC . . . C 2 26.145 46.945 9.868 0.5 35.47 ? O11 DCC 201 A 1 
HETATM 25 O O12 DCC . . . C 2 26.277 48.343 7.657 0.5 35.52 ? O12 DCC 201 A 1 
HETATM 26 O O6 DCC . . . C 2 26.938 45.912 7.721 0.5 36.62 ? O6 DCC 201 A 1 
HETATM 27 P P2 DCC . . . C 2 27.768 44.667 8.313 0.5 38.31 ? P2 DCC 201 A 1 
HETATM 28 O O21 DCC . . . C 2 27.775 43.576 7.268 0.5 38.59 ? O21 DCC 201 A 1 
HETATM 29 O O22 DCC . . . C 2 29.068 45.193 8.876 0.5 38.5 ? O22 DCC 201 A 1 
HETATM 30 O O7 DCC . . . C 2 26.859 44.157 9.536 0.5 38.3 ? O7 DCC 201 A 1 
HETATM 31 C CPA DCC . . . C 2 25.483 43.849 9.335 0.5 38.53 ? CPA DCC 201 A 1 
HETATM 32 C CPB DCC . . . C 2 24.914 43.312 10.641 0.5 39.34 ? CPB DCC 201 A 1 
HETATM 33 C CP8 DCC . . . C 2 24.583 44.491 11.537 0.5 40.17 ? CP8 DCC 201 A 1 
HETATM 34 C CP7 DCC . . . C 2 25.919 42.395 11.321 0.5 39.79 ? CP7 DCC 201 A 1 
HETATM 35 C CP9 DCC . . . C 2 23.63 42.54 10.37 0.5 38.32 ? CP9 DCC 201 A 1 
HETATM 36 O OP3 DCC . . . C 2 24.415 45.641 10.712 0.5 39.42 ? OP3 DCC 201 A 1 
HETATM 37 C CP6 DCC . . . C 2 23.304 44.189 12.256 0.5 41.08 ? CP6 DCC 201 A 1 
HETATM 38 O OP2 DCC . . . C 2 23.228 43.192 12.951 0.5 40.81 ? OP2 DCC 201 A 1 
HETATM 39 N NP2 DCC . . . C 2 22.293 45.038 12.098 0.5 42.05 ? NP2 DCC 201 A 1 
HETATM 40 C CP5 DCC . . . C 2 21.131 44.969 12.968 0.5 43.89 ? CP5 DCC 201 A 1 
HETATM 41 C CP4 DCC . . . C 2 20.231 43.785 12.639 0.5 45.55 ? CP4 DCC 201 A 1 
HETATM 42 C CP3 DCC . . . C 2 19.35 43.422 13.815 1 48.4 ? CP3 DCC 201 A 1 
HETATM 43 O OP1 DCC . . . C 2 19.758 42.648 14.674 1 49.17 ? OP1 DCC 201 A 1 
HETATM 44 N NP1 DCC . . . C 2 18.131 43.973 13.838 1 48.45 ? NP1 DCC 201 A 1 
HETATM 45 C CP2 DCC . . . C 2 17.119 43.594 14.813 1 49.33 ? CP2 DCC 201 A 1 
HETATM 46 C CP1 DCC . . . C 2 16.128 42.55 14.304 1 51.04 ? CP1 DCC 201 A 1 
HETATM 47 S S DCC . . . C 2 16.929 41.163 13.552 1 51.52 ? S DCC 201 A 1 
HETATM 48 P P3 DCC . . . C 2 32.916 48.952 9.967 0.5 42.82 ? P3 DCC 201 A 1 
HETATM 49 O O31 DCC . . . C 2 33.453 48.56 11.319 0.5 43.34 ? O31 DCC 201 A 1 
HETATM 50 O O32 DCC . . . C 2 32.484 47.773 9.126 0.5 41.46 ? O32 DCC 201 A 1 
HETATM 51 O O33 DCC . . . C 2 33.74 50.009 9.275 0.5 42.86 ? O33 DCC 201 A 1 
HETATM 52 C CA1 DCC . . . C 2 17.2 40.073 14.792 1 53.21 ? CA1 DCC 201 A 1 
HETATM 53 C CA2 DCC . . . C 2 17.355 38.602 14.471 1 50.9 ? CA2 DCC 201 A 1 
HETATM 54 O OA1 DCC . . . C 2 17.28 40.449 15.951 1 54.58 ? OA1 DCC 201 A 1 
HETATM 55 C CA3 DCC . . . C 2 16.051 38.049 13.901 1 49.85 ? CA3 DCC 201 A 1 
HETATM 56 C CA4 DCC . . . C 2 16.026 38.157 12.378 1 49.53 ? CA4 DCC 201 A 1 
HETATM 57 C CA5 DCC . . . C 2 14.807 37.469 11.77 1 48.56 ? CA5 DCC 201 A 1 
HETATM 58 C CA6 DCC . . . C 2 14.306 38.199 10.524 1 48.63 ? CA6 DCC 201 A 1 
HETATM 59 C CA7 DCC . . . C 2 14.723 37.448 9.264 1 47.68 ? CA7 DCC 201 A 1 
HETATM 60 C CA8 DCC . . . C 2 13.958 37.893 8.02 1 46.93 ? CA8 DCC 201 A 1 
HETATM 61 C CA9 DCC . . . C 2 13.045 36.807 7.44 1 47.09 ? CA9 DCC 201 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           383 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           61 
#