data_3WHI # _model_server_result.job_id fPdigZdrifhMxxOkXF0hAg _model_server_result.datetime_utc '2024-11-22 18:14:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3whi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 3WHI # _exptl.entry_id 3WHI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3WHI _cell.length_a 135.202 _cell.length_b 135.202 _cell.length_c 151.606 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WHI _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 A,C,E 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_555 -y,-x,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 25.267667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 92 A GLN 92 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc2 A OD1 ASP 131 A ASP 131 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc3 A OD2 ASP 131 A ASP 131 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc4 A O LEU 165 A LEU 165 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc5 A OD1 ASN 167 A ASN 167 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc6 A O ILE 169 A ILE 169 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc7 A O VAL 171 A VAL 171 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc8 B OE1 GLN 92 B GLN 92 1_555 D CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc9 B OD1 ASP 131 B ASP 131 1_555 D CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc10 B OD2 ASP 131 B ASP 131 1_555 D CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc11 B O LEU 165 B LEU 165 1_555 D CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc12 B OD1 ASN 167 B ASN 167 1_555 D CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc13 B O ILE 169 B ILE 169 1_555 D CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc14 B O VAL 171 B VAL 171 1_555 D CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3WHI _atom_sites.fract_transf_matrix[1][1] 0.007396 _atom_sites.fract_transf_matrix[1][2] 0.00427 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008541 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006596 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 401 381 CA CA . D 2 CA B 1 401 381 CA CA . E 3 HOH A 1 501 1 HOH HOH . E 3 HOH A 2 502 4 HOH HOH . E 3 HOH A 3 503 5 HOH HOH . E 3 HOH A 4 504 11 HOH HOH . E 3 HOH A 5 505 12 HOH HOH . E 3 HOH A 6 506 15 HOH HOH . E 3 HOH A 7 507 16 HOH HOH . E 3 HOH A 8 508 17 HOH HOH . E 3 HOH A 9 509 19 HOH HOH . E 3 HOH A 10 510 20 HOH HOH . E 3 HOH A 11 511 21 HOH HOH . E 3 HOH A 12 512 25 HOH HOH . E 3 HOH A 13 513 27 HOH HOH . E 3 HOH A 14 514 31 HOH HOH . E 3 HOH A 15 515 34 HOH HOH . E 3 HOH A 16 516 35 HOH HOH . E 3 HOH A 17 517 38 HOH HOH . E 3 HOH A 18 518 43 HOH HOH . E 3 HOH A 19 519 44 HOH HOH . E 3 HOH A 20 520 45 HOH HOH . E 3 HOH A 21 521 50 HOH HOH . E 3 HOH A 22 522 53 HOH HOH . E 3 HOH A 23 523 56 HOH HOH . E 3 HOH A 24 524 57 HOH HOH . E 3 HOH A 25 525 59 HOH HOH . E 3 HOH A 26 526 63 HOH HOH . E 3 HOH A 27 527 67 HOH HOH . E 3 HOH A 28 528 69 HOH HOH . E 3 HOH A 29 529 72 HOH HOH . E 3 HOH A 30 530 74 HOH HOH . E 3 HOH A 31 531 75 HOH HOH . E 3 HOH A 32 532 76 HOH HOH . E 3 HOH A 33 533 77 HOH HOH . E 3 HOH A 34 534 79 HOH HOH . E 3 HOH A 35 535 83 HOH HOH . E 3 HOH A 36 536 85 HOH HOH . E 3 HOH A 37 537 87 HOH HOH . E 3 HOH A 38 538 91 HOH HOH . E 3 HOH A 39 539 92 HOH HOH . E 3 HOH A 40 540 94 HOH HOH . E 3 HOH A 41 541 95 HOH HOH . E 3 HOH A 42 542 96 HOH HOH . E 3 HOH A 43 543 100 HOH HOH . E 3 HOH A 44 544 101 HOH HOH . E 3 HOH A 45 545 102 HOH HOH . E 3 HOH A 46 546 103 HOH HOH . E 3 HOH A 47 547 108 HOH HOH . E 3 HOH A 48 548 109 HOH HOH . E 3 HOH A 49 549 110 HOH HOH . E 3 HOH A 50 550 112 HOH HOH . E 3 HOH A 51 551 113 HOH HOH . E 3 HOH A 52 552 115 HOH HOH . E 3 HOH A 53 553 118 HOH HOH . E 3 HOH A 54 554 120 HOH HOH . E 3 HOH A 55 555 126 HOH HOH . E 3 HOH A 56 556 127 HOH HOH . E 3 HOH A 57 557 128 HOH HOH . E 3 HOH A 58 558 133 HOH HOH . E 3 HOH A 59 559 135 HOH HOH . E 3 HOH A 60 560 136 HOH HOH . E 3 HOH A 61 561 138 HOH HOH . E 3 HOH A 62 562 142 HOH HOH . E 3 HOH A 63 563 143 HOH HOH . E 3 HOH A 64 564 144 HOH HOH . E 3 HOH A 65 565 145 HOH HOH . E 3 HOH A 66 566 147 HOH HOH . E 3 HOH A 67 567 148 HOH HOH . E 3 HOH A 68 568 149 HOH HOH . E 3 HOH A 69 569 150 HOH HOH . E 3 HOH A 70 570 151 HOH HOH . E 3 HOH A 71 571 154 HOH HOH . E 3 HOH A 72 572 158 HOH HOH . E 3 HOH A 73 573 159 HOH HOH . E 3 HOH A 74 574 164 HOH HOH . E 3 HOH A 75 575 168 HOH HOH . E 3 HOH A 76 576 170 HOH HOH . E 3 HOH A 77 577 171 HOH HOH . E 3 HOH A 78 578 178 HOH HOH . E 3 HOH A 79 579 186 HOH HOH . F 3 HOH B 1 501 2 HOH HOH . F 3 HOH B 2 502 6 HOH HOH . F 3 HOH B 3 503 8 HOH HOH . F 3 HOH B 4 504 9 HOH HOH . F 3 HOH B 5 505 10 HOH HOH . F 3 HOH B 6 506 13 HOH HOH . F 3 HOH B 7 507 14 HOH HOH . F 3 HOH B 8 508 18 HOH HOH . F 3 HOH B 9 509 22 HOH HOH . F 3 HOH B 10 510 23 HOH HOH . F 3 HOH B 11 511 24 HOH HOH . F 3 HOH B 12 512 26 HOH HOH . F 3 HOH B 13 513 29 HOH HOH . F 3 HOH B 14 514 30 HOH HOH . F 3 HOH B 15 515 32 HOH HOH . F 3 HOH B 16 516 33 HOH HOH . F 3 HOH B 17 517 36 HOH HOH . F 3 HOH B 18 518 37 HOH HOH . F 3 HOH B 19 519 39 HOH HOH . F 3 HOH B 20 520 40 HOH HOH . F 3 HOH B 21 521 41 HOH HOH . F 3 HOH B 22 522 42 HOH HOH . F 3 HOH B 23 523 46 HOH HOH . F 3 HOH B 24 524 47 HOH HOH . F 3 HOH B 25 525 48 HOH HOH . F 3 HOH B 26 526 49 HOH HOH . F 3 HOH B 27 527 51 HOH HOH . F 3 HOH B 28 528 52 HOH HOH . F 3 HOH B 29 529 54 HOH HOH . F 3 HOH B 30 530 55 HOH HOH . F 3 HOH B 31 531 58 HOH HOH . F 3 HOH B 32 532 60 HOH HOH . F 3 HOH B 33 533 61 HOH HOH . F 3 HOH B 34 534 62 HOH HOH . F 3 HOH B 35 535 64 HOH HOH . F 3 HOH B 36 536 65 HOH HOH . F 3 HOH B 37 537 66 HOH HOH . F 3 HOH B 38 538 68 HOH HOH . F 3 HOH B 39 539 70 HOH HOH . F 3 HOH B 40 540 71 HOH HOH . F 3 HOH B 41 541 73 HOH HOH . F 3 HOH B 42 542 78 HOH HOH . F 3 HOH B 43 543 80 HOH HOH . F 3 HOH B 44 544 82 HOH HOH . F 3 HOH B 45 545 84 HOH HOH . F 3 HOH B 46 546 86 HOH HOH . F 3 HOH B 47 547 88 HOH HOH . F 3 HOH B 48 548 90 HOH HOH . F 3 HOH B 49 549 93 HOH HOH . F 3 HOH B 50 550 97 HOH HOH . F 3 HOH B 51 551 98 HOH HOH . F 3 HOH B 52 552 104 HOH HOH . F 3 HOH B 53 553 105 HOH HOH . F 3 HOH B 54 554 106 HOH HOH . F 3 HOH B 55 555 107 HOH HOH . F 3 HOH B 56 556 111 HOH HOH . F 3 HOH B 57 557 114 HOH HOH . F 3 HOH B 58 558 116 HOH HOH . F 3 HOH B 59 559 117 HOH HOH . F 3 HOH B 60 560 119 HOH HOH . F 3 HOH B 61 561 121 HOH HOH . F 3 HOH B 62 562 122 HOH HOH . F 3 HOH B 63 563 123 HOH HOH . F 3 HOH B 64 564 125 HOH HOH . F 3 HOH B 65 565 129 HOH HOH . F 3 HOH B 66 566 130 HOH HOH . F 3 HOH B 67 567 131 HOH HOH . F 3 HOH B 68 568 132 HOH HOH . F 3 HOH B 69 569 134 HOH HOH . F 3 HOH B 70 570 137 HOH HOH . F 3 HOH B 71 571 139 HOH HOH . F 3 HOH B 72 572 152 HOH HOH . F 3 HOH B 73 573 153 HOH HOH . F 3 HOH B 74 574 155 HOH HOH . F 3 HOH B 75 575 157 HOH HOH . F 3 HOH B 76 576 160 HOH HOH . F 3 HOH B 77 577 161 HOH HOH . F 3 HOH B 78 578 162 HOH HOH . F 3 HOH B 79 579 163 HOH HOH . F 3 HOH B 80 580 165 HOH HOH . F 3 HOH B 81 581 166 HOH HOH . F 3 HOH B 82 582 169 HOH HOH . F 3 HOH B 83 583 172 HOH HOH . F 3 HOH B 84 584 174 HOH HOH . F 3 HOH B 85 585 176 HOH HOH . F 3 HOH B 86 586 181 HOH HOH . F 3 HOH B 87 587 182 HOH HOH . F 3 HOH B 88 588 183 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -2.17 _atom_site.Cartn_y 69.686 _atom_site.Cartn_z 10.783 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.56 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #