data_3WHJ # _model_server_result.job_id VQqMouIe7kpdxo1goHRAOQ _model_server_result.datetime_utc '2024-11-26 02:56:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3whj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":206}' # _entry.id 3WHJ # _exptl.entry_id 3WHJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3WHJ _cell.length_a 64.59 _cell.length_b 64.59 _cell.length_c 149.76 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WHJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 A,B,C,D,E,F,G,H,I 3 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_575 x,x-y+2,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -64.59 111.873162 24.96 3 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -32.295 55.936581 24.96 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 7 A GLU 5 1_555 G CD CD . A CD 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc2 A OD1 ASP 29 A ASP 27 1_555 E CD CD . A CD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc3 A OD2 ASP 29 A ASP 27 1_555 E CD CD . A CD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc4 A NZ LYS 40 A LYS 38 1_555 F CD CD . A CD 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc5 A OE1 GLU 44 A GLU 42 1_555 F CD CD . A CD 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc6 A OE2 GLU 44 A GLU 42 1_555 F CD CD . A CD 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc7 A OD2 ASP 94 A ASP 92 1_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc8 A OD1 ASP 94 A ASP 92 1_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc9 A NE2 HIS 97 A HIS 95 1_555 E CD CD . A CD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc10 A OD2 ASP 111 A ASP 109 1_555 H CD CD . A CD 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc11 B O1 SO4 . A SO4 201 1_555 E CD CD . A CD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc12 B O2 SO4 . A SO4 201 1_555 E CD CD . A CD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc13 B S SO4 . A SO4 201 1_555 E CD CD . A CD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? metalc ? metalc14 C O3 SO4 . A SO4 202 1_555 F CD CD . A CD 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc15 C S SO4 . A SO4 202 1_555 F CD CD . A CD 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.052 ? metalc ? metalc16 D CD CD . A CD 203 1_555 I O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc17 F CD CD . A CD 205 1_555 I O HOH . A HOH 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3WHJ _atom_sites.fract_transf_matrix[1][1] 0.015483 _atom_sites.fract_transf_matrix[1][2] 0.008939 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017878 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006677 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 1 SO4 SO4 . C 2 SO4 A 1 202 2 SO4 SO4 . D 3 CD A 1 203 3 CD CD . E 3 CD A 1 204 4 CD CD . F 3 CD A 1 205 5 CD CD . G 3 CD A 1 206 6 CD CD . H 3 CD A 1 207 7 CD CD . I 4 HOH A 1 301 1 HOH HOH . I 4 HOH A 2 302 2 HOH HOH . I 4 HOH A 3 303 3 HOH HOH . I 4 HOH A 4 304 4 HOH HOH . I 4 HOH A 5 305 5 HOH HOH . I 4 HOH A 6 306 6 HOH HOH . I 4 HOH A 7 307 7 HOH HOH . I 4 HOH A 8 308 8 HOH HOH . I 4 HOH A 9 309 9 HOH HOH . I 4 HOH A 10 310 10 HOH HOH . I 4 HOH A 11 311 11 HOH HOH . I 4 HOH A 12 312 12 HOH HOH . I 4 HOH A 13 313 13 HOH HOH . I 4 HOH A 14 314 14 HOH HOH . I 4 HOH A 15 315 15 HOH HOH . I 4 HOH A 16 316 16 HOH HOH . I 4 HOH A 17 317 17 HOH HOH . I 4 HOH A 18 318 18 HOH HOH . I 4 HOH A 19 319 19 HOH HOH . I 4 HOH A 20 320 20 HOH HOH . I 4 HOH A 21 321 21 HOH HOH . I 4 HOH A 22 322 22 HOH HOH . I 4 HOH A 23 323 23 HOH HOH . I 4 HOH A 24 324 24 HOH HOH . I 4 HOH A 25 325 25 HOH HOH . I 4 HOH A 26 326 26 HOH HOH . I 4 HOH A 27 327 27 HOH HOH . I 4 HOH A 28 328 28 HOH HOH . I 4 HOH A 29 329 29 HOH HOH . I 4 HOH A 30 330 30 HOH HOH . I 4 HOH A 31 331 31 HOH HOH . I 4 HOH A 32 332 32 HOH HOH . I 4 HOH A 33 333 33 HOH HOH . I 4 HOH A 34 334 34 HOH HOH . I 4 HOH A 35 335 35 HOH HOH . I 4 HOH A 36 336 36 HOH HOH . I 4 HOH A 37 337 37 HOH HOH . I 4 HOH A 38 338 38 HOH HOH . I 4 HOH A 39 339 39 HOH HOH . I 4 HOH A 40 340 40 HOH HOH . I 4 HOH A 41 341 41 HOH HOH . I 4 HOH A 42 342 42 HOH HOH . I 4 HOH A 43 343 43 HOH HOH . I 4 HOH A 44 344 44 HOH HOH . I 4 HOH A 45 345 45 HOH HOH . I 4 HOH A 46 346 46 HOH HOH . I 4 HOH A 47 347 47 HOH HOH . I 4 HOH A 48 348 48 HOH HOH . I 4 HOH A 49 349 49 HOH HOH . I 4 HOH A 50 350 50 HOH HOH . I 4 HOH A 51 351 51 HOH HOH . I 4 HOH A 52 352 52 HOH HOH . I 4 HOH A 53 353 53 HOH HOH . I 4 HOH A 54 354 54 HOH HOH . I 4 HOH A 55 355 55 HOH HOH . I 4 HOH A 56 356 56 HOH HOH . I 4 HOH A 57 357 57 HOH HOH . I 4 HOH A 58 358 58 HOH HOH . I 4 HOH A 59 359 59 HOH HOH . I 4 HOH A 60 360 60 HOH HOH . I 4 HOH A 61 361 61 HOH HOH . I 4 HOH A 62 362 62 HOH HOH . I 4 HOH A 63 363 63 HOH HOH . I 4 HOH A 64 364 64 HOH HOH . I 4 HOH A 65 365 65 HOH HOH . I 4 HOH A 66 366 66 HOH HOH . I 4 HOH A 67 367 67 HOH HOH . I 4 HOH A 68 368 68 HOH HOH . I 4 HOH A 69 369 69 HOH HOH . I 4 HOH A 70 370 70 HOH HOH . I 4 HOH A 71 371 71 HOH HOH . I 4 HOH A 72 372 72 HOH HOH . I 4 HOH A 73 373 73 HOH HOH . I 4 HOH A 74 374 74 HOH HOH . I 4 HOH A 75 375 75 HOH HOH . I 4 HOH A 76 376 76 HOH HOH . I 4 HOH A 77 377 77 HOH HOH . I 4 HOH A 78 378 78 HOH HOH . I 4 HOH A 79 379 79 HOH HOH . I 4 HOH A 80 380 80 HOH HOH . I 4 HOH A 81 381 81 HOH HOH . I 4 HOH A 82 382 82 HOH HOH . I 4 HOH A 83 383 83 HOH HOH . I 4 HOH A 84 384 84 HOH HOH . I 4 HOH A 85 385 85 HOH HOH . I 4 HOH A 86 386 86 HOH HOH . I 4 HOH A 87 387 87 HOH HOH . I 4 HOH A 88 388 88 HOH HOH . I 4 HOH A 89 389 89 HOH HOH . I 4 HOH A 90 390 90 HOH HOH . I 4 HOH A 91 391 91 HOH HOH . I 4 HOH A 92 392 92 HOH HOH . I 4 HOH A 93 393 93 HOH HOH . I 4 HOH A 94 394 94 HOH HOH . I 4 HOH A 95 395 95 HOH HOH . I 4 HOH A 96 396 96 HOH HOH . I 4 HOH A 97 397 97 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x -5.689 _atom_site.Cartn_y 88.025 _atom_site.Cartn_z 13.151 _atom_site.occupancy 0.6 _atom_site.B_iso_or_equiv 77.13 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 206 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #