data_3WHK
#
_model_server_result.job_id            R2dE7PGrBXt0VQRuUn3uyg 
_model_server_result.datetime_utc      '2024-11-22 23:42:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3whk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":600}' 
#
_entry.id    3WHK 
#
_exptl.entry_id    3WHK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90.04 
_cell.angle_beta          90.03 
_cell.angle_gamma         89.89 
_cell.entry_id            3WHK 
_cell.length_a            71.04 
_cell.length_b            85.76 
_cell.length_c            105.26 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3WHK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
PISA monomeric 1 author_and_software_defined_assembly 6 
PISA monomeric 1 author_and_software_defined_assembly 7 
PISA monomeric 1 author_and_software_defined_assembly 8 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,I,Q 1 1 
B,J,R 2 1 
C,K,S 3 1 
D,L,T 4 1 
E,M,U 5 1 
F,N,V 6 1 
G,O,W 7 1 
H,P,X 8 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     3WHK 
_atom_sites.fract_transf_matrix[1][1]    0.014076 
_atom_sites.fract_transf_matrix[1][2]    -0.000027 
_atom_sites.fract_transf_matrix[1][3]    0.000007 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01166 
_atom_sites.fract_transf_matrix[2][3]    0.000009 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0095 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 ATP A 1 600 600 ATP ATP . 
J 2 ATP B 1 600 600 ATP ATP . 
K 2 ATP C 1 600 600 ATP ATP . 
L 2 ATP D 1 600 600 ATP ATP . 
M 2 ATP E 1 600 600 ATP ATP . 
N 2 ATP F 1 600 600 ATP ATP . 
O 2 ATP G 1 600 600 ATP ATP . 
P 2 ATP H 1 600 600 ATP ATP . 
Q 3 HOH A 1 701 1 HOH HOH . 
Q 3 HOH A 2 702 15 HOH HOH . 
Q 3 HOH A 3 703 19 HOH HOH . 
Q 3 HOH A 4 704 30 HOH HOH . 
Q 3 HOH A 5 705 33 HOH HOH . 
Q 3 HOH A 6 706 37 HOH HOH . 
Q 3 HOH A 7 707 42 HOH HOH . 
Q 3 HOH A 8 708 48 HOH HOH . 
Q 3 HOH A 9 709 49 HOH HOH . 
Q 3 HOH A 10 710 50 HOH HOH . 
Q 3 HOH A 11 711 74 HOH HOH . 
R 3 HOH B 1 701 2 HOH HOH . 
R 3 HOH B 2 702 22 HOH HOH . 
R 3 HOH B 3 703 29 HOH HOH . 
R 3 HOH B 4 704 44 HOH HOH . 
R 3 HOH B 5 705 47 HOH HOH . 
R 3 HOH B 6 706 52 HOH HOH . 
R 3 HOH B 7 707 58 HOH HOH . 
R 3 HOH B 8 708 65 HOH HOH . 
R 3 HOH B 9 709 67 HOH HOH . 
R 3 HOH B 10 710 73 HOH HOH . 
R 3 HOH B 11 711 76 HOH HOH . 
R 3 HOH B 12 712 82 HOH HOH . 
R 3 HOH B 13 713 83 HOH HOH . 
S 3 HOH C 1 701 6 HOH HOH . 
S 3 HOH C 2 702 7 HOH HOH . 
S 3 HOH C 3 703 8 HOH HOH . 
S 3 HOH C 4 704 9 HOH HOH . 
S 3 HOH C 5 705 35 HOH HOH . 
S 3 HOH C 6 706 41 HOH HOH . 
S 3 HOH C 7 707 43 HOH HOH . 
S 3 HOH C 8 708 45 HOH HOH . 
S 3 HOH C 9 709 46 HOH HOH . 
S 3 HOH C 10 710 53 HOH HOH . 
S 3 HOH C 11 711 62 HOH HOH . 
S 3 HOH C 12 712 64 HOH HOH . 
S 3 HOH C 13 713 66 HOH HOH . 
S 3 HOH C 14 714 80 HOH HOH . 
T 3 HOH D 1 701 16 HOH HOH . 
T 3 HOH D 2 702 20 HOH HOH . 
T 3 HOH D 3 703 24 HOH HOH . 
T 3 HOH D 4 704 25 HOH HOH . 
T 3 HOH D 5 705 26 HOH HOH . 
T 3 HOH D 6 706 38 HOH HOH . 
T 3 HOH D 7 707 59 HOH HOH . 
T 3 HOH D 8 708 61 HOH HOH . 
T 3 HOH D 9 709 71 HOH HOH . 
T 3 HOH D 10 710 81 HOH HOH . 
U 3 HOH E 1 701 5 HOH HOH . 
U 3 HOH E 2 702 31 HOH HOH . 
U 3 HOH E 3 703 32 HOH HOH . 
U 3 HOH E 4 704 39 HOH HOH . 
U 3 HOH E 5 705 40 HOH HOH . 
U 3 HOH E 6 706 57 HOH HOH . 
U 3 HOH E 7 707 60 HOH HOH . 
U 3 HOH E 8 708 63 HOH HOH . 
U 3 HOH E 9 709 68 HOH HOH . 
U 3 HOH E 10 710 70 HOH HOH . 
U 3 HOH E 11 711 77 HOH HOH . 
U 3 HOH E 12 712 78 HOH HOH . 
U 3 HOH E 13 713 79 HOH HOH . 
V 3 HOH F 1 701 3 HOH HOH . 
V 3 HOH F 2 702 4 HOH HOH . 
V 3 HOH F 3 703 17 HOH HOH . 
V 3 HOH F 4 704 23 HOH HOH . 
V 3 HOH F 5 705 27 HOH HOH . 
V 3 HOH F 6 706 36 HOH HOH . 
V 3 HOH F 7 707 51 HOH HOH . 
V 3 HOH F 8 708 54 HOH HOH . 
V 3 HOH F 9 709 56 HOH HOH . 
V 3 HOH F 10 710 69 HOH HOH . 
V 3 HOH F 11 711 75 HOH HOH . 
W 3 HOH G 1 701 13 HOH HOH . 
W 3 HOH G 2 702 14 HOH HOH . 
W 3 HOH G 3 703 34 HOH HOH . 
W 3 HOH G 4 704 55 HOH HOH . 
W 3 HOH G 5 705 72 HOH HOH . 
X 3 HOH H 1 701 10 HOH HOH . 
X 3 HOH H 2 702 11 HOH HOH . 
X 3 HOH H 3 703 12 HOH HOH . 
X 3 HOH H 4 704 18 HOH HOH . 
X 3 HOH H 5 705 21 HOH HOH . 
X 3 HOH H 6 706 28 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . J 2 -22.973 -10.99 3.353 1 69.13 ? PG ATP 600 B 1 
HETATM 2 O O1G ATP . . . J 2 -24.461 -11.012 3.645 1 60.95 ? O1G ATP 600 B 1 
HETATM 3 O O2G ATP . . . J 2 -22.078 -11.07 4.614 1 58.23 ? O2G ATP 600 B 1 
HETATM 4 O O3G ATP . . . J 2 -22.687 -11.988 2.267 1 59.38 ? O3G ATP 600 B 1 
HETATM 5 P PB ATP . . . J 2 -21.386 -8.609 2.829 1 37.85 ? PB ATP 600 B 1 
HETATM 6 O O1B ATP . . . J 2 -21.563 -7.274 3.513 1 38.06 ? O1B ATP 600 B 1 
HETATM 7 O O2B ATP . . . J 2 -20.26 -9.51 3.269 1 43.69 ? O2B ATP 600 B 1 
HETATM 8 O O3B ATP . . . J 2 -22.702 -9.523 2.635 1 48 ? O3B ATP 600 B 1 
HETATM 9 P PA ATP . . . J 2 -19.898 -8.878 0.405 1 35.14 ? PA ATP 600 B 1 
HETATM 10 O O1A ATP . . . J 2 -18.534 -8.35 0.759 1 34.91 ? O1A ATP 600 B 1 
HETATM 11 O O2A ATP . . . J 2 -20.102 -10.364 0.382 1 36.21 ? O2A ATP 600 B 1 
HETATM 12 O O3A ATP . . . J 2 -21.055 -8.181 1.308 1 38.89 ? O3A ATP 600 B 1 
HETATM 13 O O5' ATP . . . J 2 -20.304 -8.303 -1.028 1 34.65 ? O5' ATP 600 B 1 
HETATM 14 C C5' ATP . . . J 2 -20.67 -9.249 -2.038 1 35.41 ? C5' ATP 600 B 1 
HETATM 15 C C4' ATP . . . J 2 -20.106 -8.82 -3.381 1 33.89 ? C4' ATP 600 B 1 
HETATM 16 O O4' ATP . . . J 2 -20.704 -7.595 -3.769 1 33.76 ? O4' ATP 600 B 1 
HETATM 17 C C3' ATP . . . J 2 -18.603 -8.574 -3.248 1 33.62 ? C3' ATP 600 B 1 
HETATM 18 O O3' ATP . . . J 2 -17.92 -9.648 -3.855 1 32.87 ? O3' ATP 600 B 1 
HETATM 19 C C2' ATP . . . J 2 -18.341 -7.328 -4.01 1 31.04 ? C2' ATP 600 B 1 
HETATM 20 O O2' ATP . . . J 2 -17.965 -7.849 -5.247 1 31.9 ? O2' ATP 600 B 1 
HETATM 21 C C1' ATP . . . J 2 -19.698 -6.636 -4.147 1 35.43 ? C1' ATP 600 B 1 
HETATM 22 N N9 ATP . . . J 2 -19.65 -5.473 -3.254 1 35.83 ? N9 ATP 600 B 1 
HETATM 23 C C8 ATP . . . J 2 -20.369 -5.279 -2.152 1 33.67 ? C8 ATP 600 B 1 
HETATM 24 N N7 ATP . . . J 2 -19.989 -4.112 -1.572 1 36.46 ? N7 ATP 600 B 1 
HETATM 25 C C5 ATP . . . J 2 -18.979 -3.584 -2.286 1 35.74 ? C5 ATP 600 B 1 
HETATM 26 C C6 ATP . . . J 2 -18.112 -2.412 -2.227 1 38.24 ? C6 ATP 600 B 1 
HETATM 27 N N6 ATP . . . J 2 -18.249 -1.515 -1.233 1 43.05 ? N6 ATP 600 B 1 
HETATM 28 N N1 ATP . . . J 2 -17.164 -2.235 -3.179 1 41.42 ? N1 ATP 600 B 1 
HETATM 29 C C2 ATP . . . J 2 -16.997 -3.121 -4.172 1 41.98 ? C2 ATP 600 B 1 
HETATM 30 N N3 ATP . . . J 2 -17.757 -4.223 -4.274 1 41.91 ? N3 ATP 600 B 1 
HETATM 31 C C4 ATP . . . J 2 -18.752 -4.493 -3.39 1 39.27 ? C4 ATP 600 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#