data_3WHK
#
_model_server_result.job_id            90lLu7fd87Lh8hPBfQNGfw 
_model_server_result.datetime_utc      '2024-11-26 12:57:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3whk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":600}' 
#
_entry.id    3WHK 
#
_exptl.entry_id    3WHK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90.04 
_cell.angle_beta          90.03 
_cell.angle_gamma         89.89 
_cell.entry_id            3WHK 
_cell.length_a            71.04 
_cell.length_b            85.76 
_cell.length_c            105.26 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3WHK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
PISA monomeric 1 author_and_software_defined_assembly 6 
PISA monomeric 1 author_and_software_defined_assembly 7 
PISA monomeric 1 author_and_software_defined_assembly 8 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,I,Q 1 1 
B,J,R 2 1 
C,K,S 3 1 
D,L,T 4 1 
E,M,U 5 1 
F,N,V 6 1 
G,O,W 7 1 
H,P,X 8 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     3WHK 
_atom_sites.fract_transf_matrix[1][1]    0.014076 
_atom_sites.fract_transf_matrix[1][2]    -0.000027 
_atom_sites.fract_transf_matrix[1][3]    0.000007 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01166 
_atom_sites.fract_transf_matrix[2][3]    0.000009 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0095 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 ATP A 1 600 600 ATP ATP . 
J 2 ATP B 1 600 600 ATP ATP . 
K 2 ATP C 1 600 600 ATP ATP . 
L 2 ATP D 1 600 600 ATP ATP . 
M 2 ATP E 1 600 600 ATP ATP . 
N 2 ATP F 1 600 600 ATP ATP . 
O 2 ATP G 1 600 600 ATP ATP . 
P 2 ATP H 1 600 600 ATP ATP . 
Q 3 HOH A 1 701 1 HOH HOH . 
Q 3 HOH A 2 702 15 HOH HOH . 
Q 3 HOH A 3 703 19 HOH HOH . 
Q 3 HOH A 4 704 30 HOH HOH . 
Q 3 HOH A 5 705 33 HOH HOH . 
Q 3 HOH A 6 706 37 HOH HOH . 
Q 3 HOH A 7 707 42 HOH HOH . 
Q 3 HOH A 8 708 48 HOH HOH . 
Q 3 HOH A 9 709 49 HOH HOH . 
Q 3 HOH A 10 710 50 HOH HOH . 
Q 3 HOH A 11 711 74 HOH HOH . 
R 3 HOH B 1 701 2 HOH HOH . 
R 3 HOH B 2 702 22 HOH HOH . 
R 3 HOH B 3 703 29 HOH HOH . 
R 3 HOH B 4 704 44 HOH HOH . 
R 3 HOH B 5 705 47 HOH HOH . 
R 3 HOH B 6 706 52 HOH HOH . 
R 3 HOH B 7 707 58 HOH HOH . 
R 3 HOH B 8 708 65 HOH HOH . 
R 3 HOH B 9 709 67 HOH HOH . 
R 3 HOH B 10 710 73 HOH HOH . 
R 3 HOH B 11 711 76 HOH HOH . 
R 3 HOH B 12 712 82 HOH HOH . 
R 3 HOH B 13 713 83 HOH HOH . 
S 3 HOH C 1 701 6 HOH HOH . 
S 3 HOH C 2 702 7 HOH HOH . 
S 3 HOH C 3 703 8 HOH HOH . 
S 3 HOH C 4 704 9 HOH HOH . 
S 3 HOH C 5 705 35 HOH HOH . 
S 3 HOH C 6 706 41 HOH HOH . 
S 3 HOH C 7 707 43 HOH HOH . 
S 3 HOH C 8 708 45 HOH HOH . 
S 3 HOH C 9 709 46 HOH HOH . 
S 3 HOH C 10 710 53 HOH HOH . 
S 3 HOH C 11 711 62 HOH HOH . 
S 3 HOH C 12 712 64 HOH HOH . 
S 3 HOH C 13 713 66 HOH HOH . 
S 3 HOH C 14 714 80 HOH HOH . 
T 3 HOH D 1 701 16 HOH HOH . 
T 3 HOH D 2 702 20 HOH HOH . 
T 3 HOH D 3 703 24 HOH HOH . 
T 3 HOH D 4 704 25 HOH HOH . 
T 3 HOH D 5 705 26 HOH HOH . 
T 3 HOH D 6 706 38 HOH HOH . 
T 3 HOH D 7 707 59 HOH HOH . 
T 3 HOH D 8 708 61 HOH HOH . 
T 3 HOH D 9 709 71 HOH HOH . 
T 3 HOH D 10 710 81 HOH HOH . 
U 3 HOH E 1 701 5 HOH HOH . 
U 3 HOH E 2 702 31 HOH HOH . 
U 3 HOH E 3 703 32 HOH HOH . 
U 3 HOH E 4 704 39 HOH HOH . 
U 3 HOH E 5 705 40 HOH HOH . 
U 3 HOH E 6 706 57 HOH HOH . 
U 3 HOH E 7 707 60 HOH HOH . 
U 3 HOH E 8 708 63 HOH HOH . 
U 3 HOH E 9 709 68 HOH HOH . 
U 3 HOH E 10 710 70 HOH HOH . 
U 3 HOH E 11 711 77 HOH HOH . 
U 3 HOH E 12 712 78 HOH HOH . 
U 3 HOH E 13 713 79 HOH HOH . 
V 3 HOH F 1 701 3 HOH HOH . 
V 3 HOH F 2 702 4 HOH HOH . 
V 3 HOH F 3 703 17 HOH HOH . 
V 3 HOH F 4 704 23 HOH HOH . 
V 3 HOH F 5 705 27 HOH HOH . 
V 3 HOH F 6 706 36 HOH HOH . 
V 3 HOH F 7 707 51 HOH HOH . 
V 3 HOH F 8 708 54 HOH HOH . 
V 3 HOH F 9 709 56 HOH HOH . 
V 3 HOH F 10 710 69 HOH HOH . 
V 3 HOH F 11 711 75 HOH HOH . 
W 3 HOH G 1 701 13 HOH HOH . 
W 3 HOH G 2 702 14 HOH HOH . 
W 3 HOH G 3 703 34 HOH HOH . 
W 3 HOH G 4 704 55 HOH HOH . 
W 3 HOH G 5 705 72 HOH HOH . 
X 3 HOH H 1 701 10 HOH HOH . 
X 3 HOH H 2 702 11 HOH HOH . 
X 3 HOH H 3 703 12 HOH HOH . 
X 3 HOH H 4 704 18 HOH HOH . 
X 3 HOH H 5 705 21 HOH HOH . 
X 3 HOH H 6 706 28 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . P 2 -12.032 -53.978 83.083 1 69.24 ? PG ATP 600 H 1 
HETATM 2 O O1G ATP . . . P 2 -11.93 -54.162 81.58 1 57.47 ? O1G ATP 600 H 1 
HETATM 3 O O2G ATP . . . P 2 -13.265 -54.651 83.658 1 61.5 ? O2G ATP 600 H 1 
HETATM 4 O O3G ATP . . . P 2 -10.752 -54.302 83.839 1 50.8 ? O3G ATP 600 H 1 
HETATM 5 P PB ATP . . . P 2 -13.774 -51.686 83.438 1 45.8 ? PB ATP 600 H 1 
HETATM 6 O O1B ATP . . . P 2 -13.759 -50.295 82.837 1 43.17 ? O1B ATP 600 H 1 
HETATM 7 O O2B ATP . . . P 2 -14.794 -52.708 82.949 1 39.87 ? O2B ATP 600 H 1 
HETATM 8 O O3B ATP . . . P 2 -12.301 -52.376 83.359 1 49.49 ? O3B ATP 600 H 1 
HETATM 9 P PA ATP . . . P 2 -15.137 -51.964 85.893 1 42.23 ? PA ATP 600 H 1 
HETATM 10 O O1A ATP . . . P 2 -16.491 -51.402 85.492 1 35.81 ? O1A ATP 600 H 1 
HETATM 11 O O2A ATP . . . P 2 -14.836 -53.448 85.888 1 37.36 ? O2A ATP 600 H 1 
HETATM 12 O O3A ATP . . . P 2 -13.966 -51.293 84.995 1 42.31 ? O3A ATP 600 H 1 
HETATM 13 O O5' ATP . . . P 2 -14.798 -51.466 87.371 1 38.6 ? O5' ATP 600 H 1 
HETATM 14 C C5' ATP . . . P 2 -14.498 -52.336 88.466 1 36.21 ? C5' ATP 600 H 1 
HETATM 15 C C4' ATP . . . P 2 -15.181 -51.788 89.709 1 36.31 ? C4' ATP 600 H 1 
HETATM 16 O O4' ATP . . . P 2 -14.653 -50.535 90.15 1 37.2 ? O4' ATP 600 H 1 
HETATM 17 C C3' ATP . . . P 2 -16.644 -51.53 89.399 1 36.34 ? C3' ATP 600 H 1 
HETATM 18 O O3' ATP . . . P 2 -17.382 -52.673 89.779 1 37.1 ? O3' ATP 600 H 1 
HETATM 19 C C2' ATP . . . P 2 -16.984 -50.387 90.273 1 35.96 ? C2' ATP 600 H 1 
HETATM 20 O O2' ATP . . . P 2 -17.305 -51.033 91.489 1 39.68 ? O2' ATP 600 H 1 
HETATM 21 C C1' ATP . . . P 2 -15.696 -49.606 90.428 1 36.92 ? C1' ATP 600 H 1 
HETATM 22 N N9 ATP . . . P 2 -15.734 -48.468 89.485 1 38.47 ? N9 ATP 600 H 1 
HETATM 23 C C8 ATP . . . P 2 -14.997 -48.269 88.388 1 39.65 ? C8 ATP 600 H 1 
HETATM 24 N N7 ATP . . . P 2 -15.351 -47.092 87.781 1 40.43 ? N7 ATP 600 H 1 
HETATM 25 C C5 ATP . . . P 2 -16.324 -46.534 88.495 1 38.06 ? C5 ATP 600 H 1 
HETATM 26 C C6 ATP . . . P 2 -17.144 -45.328 88.418 1 39.75 ? C6 ATP 600 H 1 
HETATM 27 N N6 ATP . . . P 2 -17.011 -44.412 87.443 1 42.58 ? N6 ATP 600 H 1 
HETATM 28 N N1 ATP . . . P 2 -18.037 -45.135 89.382 1 40.19 ? N1 ATP 600 H 1 
HETATM 29 C C2 ATP . . . P 2 -18.209 -46.007 90.382 1 39.66 ? C2 ATP 600 H 1 
HETATM 30 N N3 ATP . . . P 2 -17.499 -47.126 90.499 1 38.84 ? N3 ATP 600 H 1 
HETATM 31 C C4 ATP . . . P 2 -16.566 -47.441 89.603 1 38.77 ? C4 ATP 600 H 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           529 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#