data_3WHL # _model_server_result.job_id FTcVeFet6DfiSGeKeQr4TQ _model_server_result.datetime_utc '2024-10-19 02:19:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3whl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":600}' # _entry.id 3WHL # _exptl.entry_id 3WHL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3WHL _cell.length_a 110.63 _cell.length_b 110.63 _cell.length_c 251.94 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WHL _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I 1 1 C,D,J 2 1 E,F,K 3 1 G,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3WHL _atom_sites.fract_transf_matrix[1][1] 0.009039 _atom_sites.fract_transf_matrix[1][2] 0.005219 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010438 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003969 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ATP A 1 600 600 ATP ATP . J 3 ATP C 1 600 600 ATP ATP . K 3 ATP E 1 600 600 ATP ATP . L 3 ATP G 1 600 600 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . K 3 -6.04 41.882 -14.848 1 164.58 ? PG ATP 600 E 1 HETATM 2 O O1G ATP . . . K 3 -6.859 41.767 -13.586 1 152.67 ? O1G ATP 600 E 1 HETATM 3 O O2G ATP . . . K 3 -6.779 42.563 -15.977 1 156.94 ? O2G ATP 600 E 1 HETATM 4 O O3G ATP . . . K 3 -4.627 42.376 -14.642 1 108.69 ? O3G ATP 600 E 1 HETATM 5 P PB ATP . . . K 3 -6.597 39.723 -16.608 1 144.96 ? PB ATP 600 E 1 HETATM 6 O O1B ATP . . . K 3 -8.033 39.469 -16.215 1 100.91 ? O1B ATP 600 E 1 HETATM 7 O O2B ATP . . . K 3 -6.303 40.563 -17.827 1 156.39 ? O2B ATP 600 E 1 HETATM 8 O O3B ATP . . . K 3 -5.821 40.356 -15.339 1 149.33 ? O3B ATP 600 E 1 HETATM 9 P PA ATP . . . K 3 -4.727 38.127 -17.945 1 132.65 ? PA ATP 600 E 1 HETATM 10 O O1A ATP . . . K 3 -5.42 38.04 -19.283 1 108.36 ? O1A ATP 600 E 1 HETATM 11 O O2A ATP . . . K 3 -3.687 39.203 -17.743 1 164.71 ? O2A ATP 600 E 1 HETATM 12 O O3A ATP . . . K 3 -5.859 38.298 -16.805 1 133.16 ? O3A ATP 600 E 1 HETATM 13 O O5' ATP . . . K 3 -4.039 36.696 -17.67 1 99.22 ? O5' ATP 600 E 1 HETATM 14 C C5' ATP . . . K 3 -2.919 36.566 -16.796 1 124.95 ? C5' ATP 600 E 1 HETATM 15 C C4' ATP . . . K 3 -2.303 35.185 -16.991 1 128.1 ? C4' ATP 600 E 1 HETATM 16 O O4' ATP . . . K 3 -3.295 34.188 -16.74 1 103.16 ? O4' ATP 600 E 1 HETATM 17 C C3' ATP . . . K 3 -1.808 34.996 -18.417 1 140.74 ? C3' ATP 600 E 1 HETATM 18 O O3' ATP . . . K 3 -0.42 34.65 -18.415 1 149.24 ? O3' ATP 600 E 1 HETATM 19 C C2' ATP . . . K 3 -2.62 33.851 -18.985 1 133.44 ? C2' ATP 600 E 1 HETATM 20 O O2' ATP . . . K 3 -1.76 32.875 -19.579 1 149.55 ? O2' ATP 600 E 1 HETATM 21 C C1' ATP . . . K 3 -3.383 33.253 -17.815 1 126.11 ? C1' ATP 600 E 1 HETATM 22 N N9 ATP . . . K 3 -4.808 33.108 -18.19 1 143.52 ? N9 ATP 600 E 1 HETATM 23 C C8 ATP . . . K 3 -5.82 33.795 -17.631 1 137.47 ? C8 ATP 600 E 1 HETATM 24 N N7 ATP . . . K 3 -7.011 33.446 -18.179 1 128.15 ? N7 ATP 600 E 1 HETATM 25 C C5 ATP . . . K 3 -6.767 32.513 -19.113 1 130.57 ? C5 ATP 600 E 1 HETATM 26 C C6 ATP . . . K 3 -7.583 31.724 -20.063 1 132.44 ? C6 ATP 600 E 1 HETATM 27 N N6 ATP . . . K 3 -8.928 31.877 -20.115 1 144.73 ? N6 ATP 600 E 1 HETATM 28 N N1 ATP . . . K 3 -6.941 30.852 -20.871 1 130.99 ? N1 ATP 600 E 1 HETATM 29 C C2 ATP . . . K 3 -5.604 30.698 -20.821 1 140.41 ? C2 ATP 600 E 1 HETATM 30 N N3 ATP . . . K 3 -4.803 31.381 -19.984 1 144.92 ? N3 ATP 600 E 1 HETATM 31 C C4 ATP . . . K 3 -5.314 32.286 -19.115 1 143.72 ? C4 ATP 600 E 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #