data_3WHL # _model_server_result.job_id 93_JQeRYREW0DXfa7-q7Lw _model_server_result.datetime_utc '2024-10-19 02:21:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3whl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":600}' # _entry.id 3WHL # _exptl.entry_id 3WHL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3WHL _cell.length_a 110.63 _cell.length_b 110.63 _cell.length_c 251.94 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WHL _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I 1 1 C,D,J 2 1 E,F,K 3 1 G,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3WHL _atom_sites.fract_transf_matrix[1][1] 0.009039 _atom_sites.fract_transf_matrix[1][2] 0.005219 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010438 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003969 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ATP A 1 600 600 ATP ATP . J 3 ATP C 1 600 600 ATP ATP . K 3 ATP E 1 600 600 ATP ATP . L 3 ATP G 1 600 600 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . L 3 -23.584 83.407 -22.664 1 169.65 ? PG ATP 600 G 1 HETATM 2 O O1G ATP . . . L 3 -23.067 82.571 -21.517 1 158.01 ? O1G ATP 600 G 1 HETATM 3 O O2G ATP . . . L 3 -24.191 84.717 -22.222 1 120.9 ? O2G ATP 600 G 1 HETATM 4 O O3G ATP . . . L 3 -22.615 83.539 -23.816 1 141.25 ? O3G ATP 600 G 1 HETATM 5 P PB ATP . . . L 3 -26.352 82.661 -22.889 1 134.51 ? PB ATP 600 G 1 HETATM 6 O O1B ATP . . . L 3 -26.624 81.703 -21.753 1 102.2 ? O1B ATP 600 G 1 HETATM 7 O O2B ATP . . . L 3 -26.744 84.111 -22.746 1 135.26 ? O2B ATP 600 G 1 HETATM 8 O O3B ATP . . . L 3 -24.795 82.55 -23.314 1 153.03 ? O3B ATP 600 G 1 HETATM 9 P PA ATP . . . L 3 -27.591 83.08 -25.371 1 135.54 ? PA ATP 600 G 1 HETATM 10 O O1A ATP . . . L 3 -29.024 83.462 -25.094 1 123.1 ? O1A ATP 600 G 1 HETATM 11 O O2A ATP . . . L 3 -26.568 84.175 -25.552 1 136.27 ? O2A ATP 600 G 1 HETATM 12 O O3A ATP . . . L 3 -27.099 82.084 -24.199 1 137.7 ? O3A ATP 600 G 1 HETATM 13 O O5' ATP . . . L 3 -27.598 82.179 -26.703 1 126.61 ? O5' ATP 600 G 1 HETATM 14 C C5' ATP . . . L 3 -26.528 82.226 -27.644 1 135.4 ? C5' ATP 600 G 1 HETATM 15 C C4' ATP . . . L 3 -27.041 81.614 -28.941 1 134.59 ? C4' ATP 600 G 1 HETATM 16 O O4' ATP . . . L 3 -27.523 80.299 -28.665 1 110.37 ? O4' ATP 600 G 1 HETATM 17 C C3' ATP . . . L 3 -28.206 82.418 -29.492 1 135.93 ? C3' ATP 600 G 1 HETATM 18 O O3' ATP . . . L 3 -28.041 82.6 -30.9 1 147.95 ? O3' ATP 600 G 1 HETATM 19 C C2' ATP . . . L 3 -29.433 81.569 -29.242 1 122.87 ? C2' ATP 600 G 1 HETATM 20 O O2' ATP . . . L 3 -30.289 81.595 -30.387 1 140.24 ? O2' ATP 600 G 1 HETATM 21 C C1' ATP . . . L 3 -28.906 80.166 -28.989 1 110.02 ? C1' ATP 600 G 1 HETATM 22 N N9 ATP . . . L 3 -29.605 79.569 -27.826 1 122.74 ? N9 ATP 600 G 1 HETATM 23 C C8 ATP . . . L 3 -29.064 79.388 -26.606 1 115.14 ? C8 ATP 600 G 1 HETATM 24 N N7 ATP . . . L 3 -29.956 78.816 -25.76 1 105.09 ? N7 ATP 600 G 1 HETATM 25 C C5 ATP . . . L 3 -31.098 78.621 -26.444 1 112.68 ? C5 ATP 600 G 1 HETATM 26 C C6 ATP . . . L 3 -32.436 78.06 -26.144 1 107.67 ? C6 ATP 600 G 1 HETATM 27 N N6 ATP . . . L 3 -32.735 77.581 -24.912 1 108.6 ? N6 ATP 600 G 1 HETATM 28 N N1 ATP . . . L 3 -33.346 78.044 -27.143 1 121.59 ? N1 ATP 600 G 1 HETATM 29 C C2 ATP . . . L 3 -33.061 78.516 -28.373 1 120.88 ? C2 ATP 600 G 1 HETATM 30 N N3 ATP . . . L 3 -31.868 79.039 -28.714 1 126.62 ? N3 ATP 600 G 1 HETATM 31 C C4 ATP . . . L 3 -30.861 79.115 -27.81 1 129.76 ? C4 ATP 600 G 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 98 _model_server_stats.query_time_ms 546 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #