data_3WI2 # _model_server_result.job_id -spXMPRxR3yBFhu7Lxx7cw _model_server_result.datetime_utc '2025-02-17 05:22:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wi2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":803}' # _entry.id 3WI2 # _exptl.entry_id 3WI2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 393.48 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-({[1-phenyl-2-(propan-2-yl)-1H-benzimidazol-6-yl]oxy}methyl)quinoline _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WI2 _cell.length_a 50.115 _cell.length_b 81.629 _cell.length_c 158.084 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WI2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 85 A HIS 529 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc2 A NE2 HIS 119 A HIS 563 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc3 A OD2 ASP 120 A ASP 564 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc4 A OD1 ASP 120 A ASP 564 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc5 A OD1 ASP 230 A ASP 674 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc6 C ZN ZN . A ZN 801 1_555 I O HOH . A HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc7 D MG MG . A MG 802 1_555 I O HOH . A HOH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? metalc ? metalc8 D MG MG . A MG 802 1_555 I O HOH . A HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc9 D MG MG . A MG 802 1_555 I O HOH . A HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc10 D MG MG . A MG 802 1_555 I O HOH . A HOH 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc11 B NE2 HIS 85 B HIS 529 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc12 B NE2 HIS 119 B HIS 563 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? metalc ? metalc13 B OD2 ASP 120 B ASP 564 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc14 B OD1 ASP 120 B ASP 564 1_555 G MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc15 B OD1 ASP 230 B ASP 674 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc16 G MG MG . B MG 802 1_555 J O HOH . B HOH 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc17 G MG MG . B MG 802 1_555 J O HOH . B HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? metalc ? metalc18 G MG MG . B MG 802 1_555 J O HOH . B HOH 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? metalc ? metalc19 G MG MG . B MG 802 1_555 J O HOH . B HOH 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc20 G MG MG . B MG 802 1_555 J O HOH . B HOH 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? # _chem_comp.formula 'C26 H23 N3 O' _chem_comp.formula_weight 393.48 _chem_comp.id P98 _chem_comp.mon_nstd_flag . _chem_comp.name 2-({[1-phenyl-2-(propan-2-yl)-1H-benzimidazol-6-yl]oxy}methyl)quinoline _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C15 P98 doub 237 n y C16 C11 P98 sing 238 n y C15 C14 P98 sing 239 n y C9 C11 P98 doub 240 n y C9 C10 P98 sing 241 n y C11 C12 P98 sing 242 n y C14 C13 P98 doub 243 n y C10 C7 P98 doub 244 n y C12 C13 P98 sing 245 n y C12 N8 P98 doub 246 n y C1 C4 P98 doub 247 n y C1 C2 P98 sing 248 n y C7 N8 P98 sing 249 n y C7 C6 P98 sing 250 n n O5 C2 P98 sing 251 n n O5 C6 P98 sing 252 n n C4 C17 P98 sing 253 n y C2 C3 P98 doub 254 n y C17 N21 P98 sing 255 n y C17 C18 P98 doub 256 n y C3 C18 P98 sing 257 n y N21 C20 P98 doub 258 n y C18 N19 P98 sing 259 n y C20 N19 P98 sing 260 n y C20 C28 P98 sing 261 n n N19 C22 P98 sing 262 n n C29 C28 P98 sing 263 n n C28 C30 P98 sing 264 n n C22 C23 P98 doub 265 n y C22 C27 P98 sing 266 n y C23 C24 P98 sing 267 n y C27 C26 P98 doub 268 n y C24 C25 P98 doub 269 n y C26 C25 P98 sing 270 n y C25 H1 P98 sing 271 n n C15 H2 P98 sing 272 n n C14 H3 P98 sing 273 n n C24 H4 P98 sing 274 n n C26 H5 P98 sing 275 n n C16 H6 P98 sing 276 n n C9 H7 P98 sing 277 n n C13 H8 P98 sing 278 n n C4 H9 P98 sing 279 n n C23 H10 P98 sing 280 n n C27 H11 P98 sing 281 n n C1 H12 P98 sing 282 n n C10 H13 P98 sing 283 n n C3 H14 P98 sing 284 n n C29 H15 P98 sing 285 n n C29 H16 P98 sing 286 n n C29 H17 P98 sing 287 n n C30 H18 P98 sing 288 n n C30 H19 P98 sing 289 n n C30 H20 P98 sing 290 n n C6 H21 P98 sing 291 n n C6 H22 P98 sing 292 n n C28 H23 P98 sing 293 n n # _atom_sites.entry_id 3WI2 _atom_sites.fract_transf_matrix[1][1] 0.019954 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012251 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006326 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 801 801 ZN ZN . D 3 MG A 1 802 802 MG MG . E 4 P98 A 1 803 803 P98 P98 . F 2 ZN B 1 801 801 ZN ZN . G 3 MG B 1 802 802 MG MG . H 4 P98 B 1 803 803 P98 P98 . I 5 HOH A 1 901 1 HOH HOH . I 5 HOH A 2 902 5 HOH HOH . I 5 HOH A 3 903 6 HOH HOH . I 5 HOH A 4 904 12 HOH HOH . I 5 HOH A 5 905 13 HOH HOH . J 5 HOH B 1 901 2 HOH HOH . J 5 HOH B 2 902 3 HOH HOH . J 5 HOH B 3 903 4 HOH HOH . J 5 HOH B 4 904 7 HOH HOH . J 5 HOH B 5 905 8 HOH HOH . J 5 HOH B 6 906 9 HOH HOH . J 5 HOH B 7 907 10 HOH HOH . J 5 HOH B 8 908 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C25 P98 . . . H 4 21.488 24.122 46.241 1 33.61 ? C25 P98 803 B 1 HETATM 2 C C15 P98 . . . H 4 20.479 20.567 34.821 1 63.12 ? C15 P98 803 B 1 HETATM 3 C C14 P98 . . . H 4 19.917 20.153 36.013 1 52.47 ? C14 P98 803 B 1 HETATM 4 C C24 P98 . . . H 4 20.598 23.886 45.202 1 42.38 ? C24 P98 803 B 1 HETATM 5 C C26 P98 . . . H 4 22.051 25.37 46.413 1 32.65 ? C26 P98 803 B 1 HETATM 6 C C16 P98 . . . H 4 21.315 21.669 34.777 1 63.8 ? C16 P98 803 B 1 HETATM 7 C C9 P98 . . . H 4 22.428 23.47 35.899 1 65.76 ? C9 P98 803 B 1 HETATM 8 C C13 P98 . . . H 4 20.222 20.863 37.15 1 55 ? C13 P98 803 B 1 HETATM 9 C C4 P98 . . . H 4 21.131 28.856 40.644 1 41.29 ? C4 P98 803 B 1 HETATM 10 C C23 P98 . . . H 4 20.285 24.901 44.317 1 40.97 ? C23 P98 803 B 1 HETATM 11 C C27 P98 . . . H 4 21.771 26.401 45.537 1 35.93 ? C27 P98 803 B 1 HETATM 12 C C1 P98 . . . H 4 21.731 27.905 39.84 1 40.25 ? C1 P98 803 B 1 HETATM 13 C C10 P98 . . . H 4 22.691 24.16 37.065 1 61.28 ? C10 P98 803 B 1 HETATM 14 C C3 P98 . . . H 4 21.637 26.207 41.538 1 36.81 ? C3 P98 803 B 1 HETATM 15 C C11 P98 . . . H 4 21.602 22.363 35.94 1 62.87 ? C11 P98 803 B 1 HETATM 16 C C12 P98 . . . H 4 21.06 21.968 37.151 1 55.51 ? C12 P98 803 B 1 HETATM 17 C C17 P98 . . . H 4 20.798 28.468 41.925 1 33.46 ? C17 P98 803 B 1 HETATM 18 C C18 P98 . . . H 4 21.053 27.183 42.324 1 31.72 ? C18 P98 803 B 1 HETATM 19 C C22 P98 . . . H 4 20.885 26.139 44.505 1 38.58 ? C22 P98 803 B 1 HETATM 20 C C2 P98 . . . H 4 21.977 26.621 40.253 1 41 ? C2 P98 803 B 1 HETATM 21 C C7 P98 . . . H 4 22.118 23.708 38.237 1 57.19 ? C7 P98 803 B 1 HETATM 22 C C20 P98 . . . H 4 20.081 28.382 43.951 1 36.64 ? C20 P98 803 B 1 HETATM 23 C C29 P98 . . . H 4 18.118 29.354 45.073 1 36.04 ? C29 P98 803 B 1 HETATM 24 C C30 P98 . . . H 4 20.284 29.374 46.315 1 38.5 ? C30 P98 803 B 1 HETATM 25 C C6 P98 . . . H 4 22.385 24.429 39.529 1 47.91 ? C6 P98 803 B 1 HETATM 26 C C28 P98 . . . H 4 19.459 28.655 45.29 1 40.31 ? C28 P98 803 B 1 HETATM 27 N N8 P98 . . . H 4 21.319 22.629 38.288 1 54.15 ? N8 P98 803 B 1 HETATM 28 N N21 P98 . . . H 4 20.202 29.206 42.924 1 36.39 ? N21 P98 803 B 1 HETATM 29 N N19 P98 . . . H 4 20.59 27.162 43.61 1 34.02 ? N19 P98 803 B 1 HETATM 30 O O5 P98 . . . H 4 22.591 25.819 39.283 1 42.04 ? O5 P98 803 B 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #