data_3WI3
#
_model_server_result.job_id            ceOXqqULlRxjwk3Yd45hFA 
_model_server_result.datetime_utc      '2024-11-04 23:04:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3wi3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":508}' 
#
_entry.id    3WI3 
#
_exptl.entry_id    3WI3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    24 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3WI3 
_cell.length_a            65.264 
_cell.length_b            92.82 
_cell.length_c            160.87 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3WI3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,EA 1 1 
B,U,V,W,X,Y,Z,AA,BA,CA,FA 2 1 
C,DA,GA 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
? 3 Y N N 
? 3 Z N N 
? 3 AA N N 
? 3 BA N N 
? 3 CA N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     3WI3 
_atom_sites.fract_transf_matrix[1][1]    0.015322 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010774 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006216 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 SO4 A 1 501 501 SO4 SO4 . 
E 3 EDO A 1 502 600 EDO EDO . 
F 3 EDO A 1 503 601 EDO EDO . 
G 3 EDO A 1 504 604 EDO EDO . 
H 3 EDO A 1 505 608 EDO EDO . 
I 3 EDO A 1 506 609 EDO EDO . 
J 3 EDO A 1 507 610 EDO EDO . 
K 3 EDO A 1 508 613 EDO EDO . 
L 3 EDO A 1 509 614 EDO EDO . 
M 3 EDO A 1 510 615 EDO EDO . 
N 3 EDO A 1 511 618 EDO EDO . 
O 3 EDO A 1 512 619 EDO EDO . 
P 3 EDO A 1 513 620 EDO EDO . 
Q 3 EDO A 1 514 622 EDO EDO . 
R 3 EDO A 1 515 625 EDO EDO . 
S 3 EDO A 1 516 626 EDO EDO . 
T 3 EDO A 1 517 627 EDO EDO . 
U 2 SO4 B 1 501 500 SO4 SO4 . 
V 3 EDO B 1 502 602 EDO EDO . 
W 3 EDO B 1 503 603 EDO EDO . 
X 3 EDO B 1 504 606 EDO EDO . 
Y 3 EDO B 1 505 607 EDO EDO . 
Z 3 EDO B 1 506 611 EDO EDO . 
AA 3 EDO B 1 507 612 EDO EDO . 
BA 3 EDO B 1 508 617 EDO EDO . 
CA 3 EDO B 1 509 624 EDO EDO . 
DA 2 SO4 C 1 501 502 SO4 SO4 . 
EA 4 HOH A 1 601 1 HOH HOH . 
EA 4 HOH A 2 602 2 HOH HOH . 
EA 4 HOH A 3 603 3 HOH HOH . 
EA 4 HOH A 4 604 4 HOH HOH . 
EA 4 HOH A 5 605 5 HOH HOH . 
EA 4 HOH A 6 606 6 HOH HOH . 
EA 4 HOH A 7 607 7 HOH HOH . 
EA 4 HOH A 8 608 8 HOH HOH . 
EA 4 HOH A 9 609 9 HOH HOH . 
EA 4 HOH A 10 610 10 HOH HOH . 
EA 4 HOH A 11 612 12 HOH HOH . 
EA 4 HOH A 12 613 13 HOH HOH . 
EA 4 HOH A 13 614 14 HOH HOH . 
EA 4 HOH A 14 615 15 HOH HOH . 
EA 4 HOH A 15 616 16 HOH HOH . 
EA 4 HOH A 16 617 17 HOH HOH . 
EA 4 HOH A 17 619 19 HOH HOH . 
EA 4 HOH A 18 620 20 HOH HOH . 
EA 4 HOH A 19 621 21 HOH HOH . 
EA 4 HOH A 20 622 22 HOH HOH . 
EA 4 HOH A 21 623 23 HOH HOH . 
EA 4 HOH A 22 624 24 HOH HOH . 
EA 4 HOH A 23 625 25 HOH HOH . 
EA 4 HOH A 24 626 26 HOH HOH . 
EA 4 HOH A 25 627 27 HOH HOH . 
EA 4 HOH A 26 629 29 HOH HOH . 
EA 4 HOH A 27 630 30 HOH HOH . 
EA 4 HOH A 28 631 31 HOH HOH . 
EA 4 HOH A 29 632 32 HOH HOH . 
EA 4 HOH A 30 633 33 HOH HOH . 
EA 4 HOH A 31 634 34 HOH HOH . 
EA 4 HOH A 32 635 35 HOH HOH . 
EA 4 HOH A 33 636 36 HOH HOH . 
EA 4 HOH A 34 637 37 HOH HOH . 
EA 4 HOH A 35 638 38 HOH HOH . 
EA 4 HOH A 36 639 39 HOH HOH . 
EA 4 HOH A 37 640 40 HOH HOH . 
EA 4 HOH A 38 641 41 HOH HOH . 
EA 4 HOH A 39 642 42 HOH HOH . 
EA 4 HOH A 40 643 43 HOH HOH . 
EA 4 HOH A 41 644 44 HOH HOH . 
EA 4 HOH A 42 645 45 HOH HOH . 
EA 4 HOH A 43 646 46 HOH HOH . 
EA 4 HOH A 44 648 48 HOH HOH . 
EA 4 HOH A 45 649 49 HOH HOH . 
EA 4 HOH A 46 650 50 HOH HOH . 
EA 4 HOH A 47 651 51 HOH HOH . 
EA 4 HOH A 48 652 52 HOH HOH . 
EA 4 HOH A 49 653 53 HOH HOH . 
EA 4 HOH A 50 654 54 HOH HOH . 
EA 4 HOH A 51 655 55 HOH HOH . 
EA 4 HOH A 52 656 56 HOH HOH . 
EA 4 HOH A 53 657 57 HOH HOH . 
EA 4 HOH A 54 658 58 HOH HOH . 
EA 4 HOH A 55 659 59 HOH HOH . 
EA 4 HOH A 56 660 60 HOH HOH . 
EA 4 HOH A 57 661 61 HOH HOH . 
EA 4 HOH A 58 662 62 HOH HOH . 
EA 4 HOH A 59 663 63 HOH HOH . 
EA 4 HOH A 60 664 64 HOH HOH . 
EA 4 HOH A 61 665 65 HOH HOH . 
EA 4 HOH A 62 666 66 HOH HOH . 
EA 4 HOH A 63 667 67 HOH HOH . 
EA 4 HOH A 64 668 68 HOH HOH . 
EA 4 HOH A 65 669 70 HOH HOH . 
EA 4 HOH A 66 670 71 HOH HOH . 
EA 4 HOH A 67 671 72 HOH HOH . 
EA 4 HOH A 68 672 73 HOH HOH . 
FA 4 HOH B 1 601 69 HOH HOH . 
FA 4 HOH B 2 602 74 HOH HOH . 
FA 4 HOH B 3 603 75 HOH HOH . 
FA 4 HOH B 4 604 76 HOH HOH . 
FA 4 HOH B 5 605 77 HOH HOH . 
FA 4 HOH B 6 606 78 HOH HOH . 
FA 4 HOH B 7 607 79 HOH HOH . 
FA 4 HOH B 8 608 80 HOH HOH . 
FA 4 HOH B 9 609 81 HOH HOH . 
FA 4 HOH B 10 610 82 HOH HOH . 
FA 4 HOH B 11 611 83 HOH HOH . 
FA 4 HOH B 12 612 84 HOH HOH . 
FA 4 HOH B 13 613 85 HOH HOH . 
FA 4 HOH B 14 614 86 HOH HOH . 
FA 4 HOH B 15 615 87 HOH HOH . 
FA 4 HOH B 16 616 88 HOH HOH . 
FA 4 HOH B 17 617 89 HOH HOH . 
FA 4 HOH B 18 618 90 HOH HOH . 
FA 4 HOH B 19 619 91 HOH HOH . 
FA 4 HOH B 20 620 92 HOH HOH . 
FA 4 HOH B 21 621 93 HOH HOH . 
FA 4 HOH B 22 623 95 HOH HOH . 
FA 4 HOH B 23 624 96 HOH HOH . 
FA 4 HOH B 24 625 97 HOH HOH . 
FA 4 HOH B 25 627 99 HOH HOH . 
FA 4 HOH B 26 628 100 HOH HOH . 
FA 4 HOH B 27 629 101 HOH HOH . 
FA 4 HOH B 28 630 102 HOH HOH . 
FA 4 HOH B 29 631 103 HOH HOH . 
FA 4 HOH B 30 632 104 HOH HOH . 
FA 4 HOH B 31 633 105 HOH HOH . 
FA 4 HOH B 32 634 106 HOH HOH . 
FA 4 HOH B 33 635 107 HOH HOH . 
FA 4 HOH B 34 636 108 HOH HOH . 
FA 4 HOH B 35 637 109 HOH HOH . 
FA 4 HOH B 36 638 110 HOH HOH . 
FA 4 HOH B 37 639 111 HOH HOH . 
FA 4 HOH B 38 640 113 HOH HOH . 
FA 4 HOH B 39 641 114 HOH HOH . 
FA 4 HOH B 40 642 115 HOH HOH . 
FA 4 HOH B 41 643 116 HOH HOH . 
FA 4 HOH B 42 644 117 HOH HOH . 
FA 4 HOH B 43 645 118 HOH HOH . 
FA 4 HOH B 44 646 119 HOH HOH . 
FA 4 HOH B 45 647 120 HOH HOH . 
FA 4 HOH B 46 648 121 HOH HOH . 
FA 4 HOH B 47 649 122 HOH HOH . 
FA 4 HOH B 48 650 123 HOH HOH . 
FA 4 HOH B 49 651 124 HOH HOH . 
FA 4 HOH B 50 653 126 HOH HOH . 
FA 4 HOH B 51 654 127 HOH HOH . 
FA 4 HOH B 52 655 128 HOH HOH . 
FA 4 HOH B 53 656 129 HOH HOH . 
FA 4 HOH B 54 657 130 HOH HOH . 
FA 4 HOH B 55 658 131 HOH HOH . 
FA 4 HOH B 56 659 132 HOH HOH . 
FA 4 HOH B 57 660 133 HOH HOH . 
FA 4 HOH B 58 661 134 HOH HOH . 
FA 4 HOH B 59 662 135 HOH HOH . 
FA 4 HOH B 60 663 136 HOH HOH . 
FA 4 HOH B 61 664 137 HOH HOH . 
FA 4 HOH B 62 665 138 HOH HOH . 
FA 4 HOH B 63 666 139 HOH HOH . 
FA 4 HOH B 64 667 140 HOH HOH . 
FA 4 HOH B 65 668 142 HOH HOH . 
FA 4 HOH B 66 669 143 HOH HOH . 
FA 4 HOH B 67 670 144 HOH HOH . 
FA 4 HOH B 68 671 145 HOH HOH . 
FA 4 HOH B 69 672 146 HOH HOH . 
FA 4 HOH B 70 673 147 HOH HOH . 
FA 4 HOH B 71 674 148 HOH HOH . 
FA 4 HOH B 72 675 149 HOH HOH . 
FA 4 HOH B 73 676 150 HOH HOH . 
FA 4 HOH B 74 677 151 HOH HOH . 
FA 4 HOH B 75 678 152 HOH HOH . 
FA 4 HOH B 76 680 154 HOH HOH . 
FA 4 HOH B 77 681 155 HOH HOH . 
FA 4 HOH B 78 682 156 HOH HOH . 
FA 4 HOH B 79 683 157 HOH HOH . 
FA 4 HOH B 80 684 158 HOH HOH . 
FA 4 HOH B 81 685 159 HOH HOH . 
FA 4 HOH B 82 686 178 HOH HOH . 
GA 4 HOH C 1 601 141 HOH HOH . 
GA 4 HOH C 2 602 160 HOH HOH . 
GA 4 HOH C 3 603 161 HOH HOH . 
GA 4 HOH C 4 604 162 HOH HOH . 
GA 4 HOH C 5 605 163 HOH HOH . 
GA 4 HOH C 6 606 164 HOH HOH . 
GA 4 HOH C 7 607 165 HOH HOH . 
GA 4 HOH C 8 608 166 HOH HOH . 
GA 4 HOH C 9 609 167 HOH HOH . 
GA 4 HOH C 10 610 168 HOH HOH . 
GA 4 HOH C 11 611 169 HOH HOH . 
GA 4 HOH C 12 612 170 HOH HOH . 
GA 4 HOH C 13 613 171 HOH HOH . 
GA 4 HOH C 14 614 172 HOH HOH . 
GA 4 HOH C 15 615 173 HOH HOH . 
GA 4 HOH C 16 616 174 HOH HOH . 
GA 4 HOH C 17 617 175 HOH HOH . 
GA 4 HOH C 18 618 176 HOH HOH . 
GA 4 HOH C 19 619 177 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . K 3 33.06 48.642 104.742 1 43.66 ? C1 EDO 508 A 1 
HETATM 2 O O1 EDO . . . K 3 32.193 47.56 105.371 1 34.56 ? O1 EDO 508 A 1 
HETATM 3 C C2 EDO . . . K 3 34.586 48.314 104.727 1 45.79 ? C2 EDO 508 A 1 
HETATM 4 O O2 EDO . . . K 3 35.232 48.934 103.553 1 54.87 ? O2 EDO 508 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#