data_3WI6
#
_model_server_result.job_id            WkcpcYVgCp1-hDyZuIqdVg 
_model_server_result.datetime_utc      '2024-11-05 09:28:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3wi6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":901}' 
#
_entry.id    3WI6 
#
_exptl.entry_id    3WI6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              258.322 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(3S)-piperidin-3-yl]-7,8-dihydro-6H-pyrazolo[1,5-a]pyrrolo[3,2-e]pyrimidin-5-amine 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3WI6 
_cell.length_a            180.061 
_cell.length_b            179.684 
_cell.length_c            254.101 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3WI6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        24 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_545 -x,-y-1/2,z -1 0 0 0 -1 0 0 0 1 0 -89.842 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
_chem_comp.formula           'C13 H18 N6' 
_chem_comp.formula_weight    258.322 
_chem_comp.id                YRZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(3S)-piperidin-3-yl]-7,8-dihydro-6H-pyrazolo[1,5-a]pyrrolo[3,2-e]pyrimidin-5-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C10 C11 YRZ sing 374 n n 
C10 C9 YRZ sing 375 n n 
C11 C6 YRZ sing 376 n n 
C9 N8 YRZ sing 377 n n 
N8 C7 YRZ sing 378 n n 
C6 C7 YRZ sing 379 n n 
C6 N19 YRZ sing 380 n n 
N19 C17 YRZ sing 381 n n 
C17 N18 YRZ doub 382 n y 
C17 C1 YRZ sing 383 n y 
C5 C1 YRZ sing 384 n n 
C5 C4 YRZ sing 385 n n 
N18 C13 YRZ sing 386 n y 
C1 C2 YRZ doub 387 n y 
C4 N3 YRZ sing 388 n n 
C13 N12 YRZ sing 389 n y 
C13 C14 YRZ doub 390 n y 
C2 N3 YRZ sing 391 n n 
C2 N12 YRZ sing 392 n y 
N12 N16 YRZ sing 393 n y 
C14 C15 YRZ sing 394 n y 
N16 C15 YRZ doub 395 n y 
N19 H1 YRZ sing 396 n n 
C6 H2 YRZ sing 397 n n 
C11 H3 YRZ sing 398 n n 
C11 H4 YRZ sing 399 n n 
C10 H5 YRZ sing 400 n n 
C10 H6 YRZ sing 401 n n 
C9 H7 YRZ sing 402 n n 
C9 H8 YRZ sing 403 n n 
N8 H9 YRZ sing 404 n n 
C7 H11 YRZ sing 405 n n 
C7 H12 YRZ sing 406 n n 
C5 H13 YRZ sing 407 n n 
C4 H14 YRZ sing 408 n n 
N3 H15 YRZ sing 409 n n 
C14 H16 YRZ sing 410 n n 
C15 H17 YRZ sing 411 n n 
C5 H10 YRZ sing 412 n n 
C4 H18 YRZ sing 413 n n 
#
_atom_sites.entry_id                     3WI6 
_atom_sites.fract_transf_matrix[1][1]    0.005554 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005565 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003935 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 YRZ A 1 901 901 YRZ LIG . 
H 2 YRZ B 1 901 901 YRZ LIG . 
I 2 YRZ C 1 901 901 YRZ LIG . 
J 2 YRZ D 1 901 901 YRZ LIG . 
K 2 YRZ E 1 901 901 YRZ LIG . 
L 2 YRZ F 1 901 901 YRZ LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N19 YRZ . . . H 2 15.669 -37.367 13.548 1 73.8 ? N19 YRZ 901 B 1 
HETATM 2 C C6 YRZ . . . H 2 14.804 -37.226 12.4 1 75.63 ? C6 YRZ 901 B 1 
HETATM 3 C C11 YRZ . . . H 2 13.879 -38.408 12.201 1 74.01 ? C11 YRZ 901 B 1 
HETATM 4 C C10 YRZ . . . H 2 13.102 -38.215 10.921 1 73.79 ? C10 YRZ 901 B 1 
HETATM 5 C C9 YRZ . . . H 2 12.4 -36.863 10.899 1 75.67 ? C9 YRZ 901 B 1 
HETATM 6 N N8 YRZ . . . H 2 13.195 -35.761 11.369 1 76.32 ? N8 YRZ 901 B 1 
HETATM 7 C C7 YRZ . . . H 2 13.955 -35.968 12.574 1 77.64 ? C7 YRZ 901 B 1 
HETATM 8 C C17 YRZ . . . H 2 16.925 -36.909 13.524 1 72.91 ? C17 YRZ 901 B 1 
HETATM 9 C C1 YRZ . . . H 2 17.636 -36.69 14.791 1 73.03 ? C1 YRZ 901 B 1 
HETATM 10 C C5 YRZ . . . H 2 17.153 -36.854 16.195 1 72.02 ? C5 YRZ 901 B 1 
HETATM 11 C C4 YRZ . . . H 2 18.362 -36.303 16.965 1 72.11 ? C4 YRZ 901 B 1 
HETATM 12 N N3 YRZ . . . H 2 19.434 -36.044 16.016 1 72.27 ? N3 YRZ 901 B 1 
HETATM 13 N N18 YRZ . . . H 2 17.63 -36.686 12.386 1 73.4 ? N18 YRZ 901 B 1 
HETATM 14 C C13 YRZ . . . H 2 18.922 -36.246 12.473 1 73.02 ? C13 YRZ 901 B 1 
HETATM 15 C C14 YRZ . . . H 2 19.843 -35.926 11.444 1 72.89 ? C14 YRZ 901 B 1 
HETATM 16 C C15 YRZ . . . H 2 21.036 -35.501 12 1 73.38 ? C15 YRZ 901 B 1 
HETATM 17 N N16 YRZ . . . H 2 20.93 -35.526 13.351 1 73.54 ? N16 YRZ 901 B 1 
HETATM 18 N N12 YRZ . . . H 2 19.61 -35.99 13.568 1 73.76 ? N12 YRZ 901 B 1 
HETATM 19 C C2 YRZ . . . H 2 19.014 -36.214 14.753 1 73.53 ? C2 YRZ 901 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           232 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           19 
#