data_3WI6 # _model_server_result.job_id yvdvjCZGvnOmklVDuB8rTQ _model_server_result.datetime_utc '2024-11-05 09:29:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wi6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":901}' # _entry.id 3WI6 # _exptl.entry_id 3WI6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 258.322 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(3S)-piperidin-3-yl]-7,8-dihydro-6H-pyrazolo[1,5-a]pyrrolo[3,2-e]pyrimidin-5-amine _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WI6 _cell.length_a 180.061 _cell.length_b 179.684 _cell.length_c 254.101 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WI6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_545 -x,-y-1/2,z -1 0 0 0 -1 0 0 0 1 0 -89.842 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C13 H18 N6' _chem_comp.formula_weight 258.322 _chem_comp.id YRZ _chem_comp.mon_nstd_flag . _chem_comp.name N-[(3S)-piperidin-3-yl]-7,8-dihydro-6H-pyrazolo[1,5-a]pyrrolo[3,2-e]pyrimidin-5-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C11 YRZ sing 374 n n C10 C9 YRZ sing 375 n n C11 C6 YRZ sing 376 n n C9 N8 YRZ sing 377 n n N8 C7 YRZ sing 378 n n C6 C7 YRZ sing 379 n n C6 N19 YRZ sing 380 n n N19 C17 YRZ sing 381 n n C17 N18 YRZ doub 382 n y C17 C1 YRZ sing 383 n y C5 C1 YRZ sing 384 n n C5 C4 YRZ sing 385 n n N18 C13 YRZ sing 386 n y C1 C2 YRZ doub 387 n y C4 N3 YRZ sing 388 n n C13 N12 YRZ sing 389 n y C13 C14 YRZ doub 390 n y C2 N3 YRZ sing 391 n n C2 N12 YRZ sing 392 n y N12 N16 YRZ sing 393 n y C14 C15 YRZ sing 394 n y N16 C15 YRZ doub 395 n y N19 H1 YRZ sing 396 n n C6 H2 YRZ sing 397 n n C11 H3 YRZ sing 398 n n C11 H4 YRZ sing 399 n n C10 H5 YRZ sing 400 n n C10 H6 YRZ sing 401 n n C9 H7 YRZ sing 402 n n C9 H8 YRZ sing 403 n n N8 H9 YRZ sing 404 n n C7 H11 YRZ sing 405 n n C7 H12 YRZ sing 406 n n C5 H13 YRZ sing 407 n n C4 H14 YRZ sing 408 n n N3 H15 YRZ sing 409 n n C14 H16 YRZ sing 410 n n C15 H17 YRZ sing 411 n n C5 H10 YRZ sing 412 n n C4 H18 YRZ sing 413 n n # _atom_sites.entry_id 3WI6 _atom_sites.fract_transf_matrix[1][1] 0.005554 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005565 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 YRZ A 1 901 901 YRZ LIG . H 2 YRZ B 1 901 901 YRZ LIG . I 2 YRZ C 1 901 901 YRZ LIG . J 2 YRZ D 1 901 901 YRZ LIG . K 2 YRZ E 1 901 901 YRZ LIG . L 2 YRZ F 1 901 901 YRZ LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N19 YRZ . . . K 2 -27.999 -8.81 -48.05 1 70.91 ? N19 YRZ 901 E 1 HETATM 2 C C6 YRZ . . . K 2 -27.718 -10.133 -47.555 1 72.22 ? C6 YRZ 901 E 1 HETATM 3 C C11 YRZ . . . K 2 -27.401 -10.157 -46.086 1 71.54 ? C11 YRZ 901 E 1 HETATM 4 C C10 YRZ . . . K 2 -26.962 -11.556 -45.717 1 71.75 ? C10 YRZ 901 E 1 HETATM 5 C C9 YRZ . . . K 2 -28.013 -12.578 -46.123 1 74.02 ? C9 YRZ 901 E 1 HETATM 6 N N8 YRZ . . . K 2 -28.567 -12.368 -47.436 1 73.74 ? N8 YRZ 901 E 1 HETATM 7 C C7 YRZ . . . K 2 -28.933 -11.017 -47.773 1 74.69 ? C7 YRZ 901 E 1 HETATM 8 C C17 YRZ . . . K 2 -27.612 -8.426 -49.285 1 68.87 ? C17 YRZ 901 E 1 HETATM 9 C C1 YRZ . . . K 2 -28.276 -7.301 -49.95 1 68.11 ? C1 YRZ 901 E 1 HETATM 10 C C5 YRZ . . . K 2 -29.437 -6.466 -49.493 1 67.74 ? C5 YRZ 901 E 1 HETATM 11 C C4 YRZ . . . K 2 -29.665 -5.609 -50.745 1 69.04 ? C4 YRZ 901 E 1 HETATM 12 N N3 YRZ . . . K 2 -28.586 -5.891 -51.69 1 69.63 ? N3 YRZ 901 E 1 HETATM 13 N N18 YRZ . . . K 2 -26.574 -8.983 -49.949 1 68.37 ? N18 YRZ 901 E 1 HETATM 14 C C13 YRZ . . . K 2 -26.211 -8.516 -51.171 1 67.4 ? C13 YRZ 901 E 1 HETATM 15 C C14 YRZ . . . K 2 -25.188 -8.957 -52.054 1 66.26 ? C14 YRZ 901 E 1 HETATM 16 C C15 YRZ . . . K 2 -25.206 -8.184 -53.215 1 66.59 ? C15 YRZ 901 E 1 HETATM 17 N N16 YRZ . . . K 2 -26.21 -7.275 -53.128 1 67.15 ? N16 YRZ 901 E 1 HETATM 18 N N12 YRZ . . . K 2 -26.779 -7.532 -51.845 1 69.04 ? N12 YRZ 901 E 1 HETATM 19 C C2 YRZ . . . K 2 -27.807 -6.896 -51.262 1 68.91 ? C2 YRZ 901 E 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #