data_3WIG # _model_server_result.job_id gMKDKHS4w28O33g6oIGHSg _model_server_result.datetime_utc '2024-11-13 18:51:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wig # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 3WIG # _exptl.entry_id 3WIG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3WIG _cell.length_a 136.366 _cell.length_b 136.366 _cell.length_c 59.764 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WIG _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1 A,B,C,D,E,F,G,H,I,J,K 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 39.842667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 135 A ASN 196 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc2 A OD2 ASP 148 A ASP 209 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc3 B O2B ANP . A ANP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc4 B O2A ANP . A ANP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 3WIG _atom_sites.fract_transf_matrix[1][1] 0.007333 _atom_sites.fract_transf_matrix[1][2] 0.004234 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008468 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016732 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 401 1 ANP ANP . C 3 MG A 1 402 2 MG MG . D 4 CHU A 1 403 1 CHU LIG . E 5 PG4 A 1 404 1 PG4 PEG . F 6 CL A 1 405 1 CL CL . G 6 CL A 1 406 2 CL CL . H 6 CL A 1 407 3 CL CL . I 6 CL A 1 408 4 CL CL . J 6 CL A 1 409 5 CL CL . K 7 HOH A 1 501 1 HOH HOH . K 7 HOH A 2 502 2 HOH HOH . K 7 HOH A 3 503 3 HOH HOH . K 7 HOH A 4 504 4 HOH HOH . K 7 HOH A 5 505 5 HOH HOH . K 7 HOH A 6 506 6 HOH HOH . K 7 HOH A 7 507 8 HOH HOH . K 7 HOH A 8 508 9 HOH HOH . K 7 HOH A 9 509 10 HOH HOH . K 7 HOH A 10 510 11 HOH HOH . K 7 HOH A 11 511 12 HOH HOH . K 7 HOH A 12 512 13 HOH HOH . K 7 HOH A 13 513 14 HOH HOH . K 7 HOH A 14 514 15 HOH HOH . K 7 HOH A 15 515 16 HOH HOH . K 7 HOH A 16 516 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 54.462 -12.241 9.785 1 77.81 ? PG ANP 401 A 1 HETATM 2 O O1G ANP . . . B 2 55.135 -11.462 8.546 1 79.14 ? O1G ANP 401 A 1 HETATM 3 O O2G ANP . . . B 2 53.316 -11.466 10.274 1 78.95 ? O2G ANP 401 A 1 HETATM 4 O O3G ANP . . . B 2 55.52 -12.404 10.965 1 79.86 ? O3G ANP 401 A 1 HETATM 5 P PB ANP . . . B 2 55.199 -14.743 8.805 1 73.82 ? PB ANP 401 A 1 HETATM 6 O O1B ANP . . . B 2 54.712 -16.081 8.411 1 73.66 ? O1B ANP 401 A 1 HETATM 7 O O2B ANP . . . B 2 56.242 -14.901 10.035 1 73.86 ? O2B ANP 401 A 1 HETATM 8 N N3B ANP . . . B 2 53.906 -13.798 9.289 1 76.73 ? N3B ANP 401 A 1 HETATM 9 P PA ANP . . . B 2 57.421 -14.388 7.209 1 69.83 ? PA ANP 401 A 1 HETATM 10 O O1A ANP . . . B 2 58 -13.437 6.246 1 71.8 ? O1A ANP 401 A 1 HETATM 11 O O2A ANP . . . B 2 58.28 -14.283 8.562 1 71.69 ? O2A ANP 401 A 1 HETATM 12 O O3A ANP . . . B 2 55.861 -13.99 7.503 1 73.7 ? O3A ANP 401 A 1 HETATM 13 O O5' ANP . . . B 2 57.546 -15.872 6.604 1 70.72 ? O5' ANP 401 A 1 HETATM 14 C C5' ANP . . . B 2 56.514 -16.113 5.629 1 69.24 ? C5' ANP 401 A 1 HETATM 15 C C4' ANP . . . B 2 56.435 -17.627 5.361 1 70.24 ? C4' ANP 401 A 1 HETATM 16 O O4' ANP . . . B 2 57.733 -18.115 4.915 1 70.05 ? O4' ANP 401 A 1 HETATM 17 C C3' ANP . . . B 2 56.061 -18.405 6.651 1 71.46 ? C3' ANP 401 A 1 HETATM 18 O O3' ANP . . . B 2 54.716 -18.901 6.604 1 74.57 ? O3' ANP 401 A 1 HETATM 19 C C2' ANP . . . B 2 57.093 -19.537 6.773 1 70.38 ? C2' ANP 401 A 1 HETATM 20 O O2' ANP . . . B 2 56.478 -20.824 6.84 1 71.88 ? O2' ANP 401 A 1 HETATM 21 C C1' ANP . . . B 2 58.011 -19.402 5.548 1 68.7 ? C1' ANP 401 A 1 HETATM 22 N N9 ANP . . . B 2 59.412 -19.466 5.984 1 65.66 ? N9 ANP 401 A 1 HETATM 23 C C8 ANP . . . B 2 60.114 -18.478 6.633 1 64.12 ? C8 ANP 401 A 1 HETATM 24 N N7 ANP . . . B 2 61.331 -18.871 6.872 1 64.21 ? N7 ANP 401 A 1 HETATM 25 C C5 ANP . . . B 2 61.499 -20.132 6.397 1 63.95 ? C5 ANP 401 A 1 HETATM 26 C C6 ANP . . . B 2 62.578 -21.064 6.361 1 62.18 ? C6 ANP 401 A 1 HETATM 27 N N6 ANP . . . B 2 63.804 -20.735 6.905 1 60.97 ? N6 ANP 401 A 1 HETATM 28 N N1 ANP . . . B 2 62.377 -22.272 5.787 1 61.59 ? N1 ANP 401 A 1 HETATM 29 C C2 ANP . . . B 2 61.194 -22.614 5.252 1 62.36 ? C2 ANP 401 A 1 HETATM 30 N N3 ANP . . . B 2 60.153 -21.771 5.262 1 63.44 ? N3 ANP 401 A 1 HETATM 31 C C4 ANP . . . B 2 60.261 -20.533 5.817 1 64.69 ? C4 ANP 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #