data_3WIO # _model_server_result.job_id wjh8xA0Ibc9wqrj6r_fCng _model_server_result.datetime_utc '2024-10-14 08:22:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wio # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 3WIO # _exptl.entry_id 3WIO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 114.099 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5R)-5-hydroxy-3-methylfuran-2(5H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WIO _cell.length_a 48.38 _cell.length_b 88.13 _cell.length_c 119.02 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WIO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H6 O3' _chem_comp.formula_weight 114.099 _chem_comp.id H3M _chem_comp.mon_nstd_flag . _chem_comp.name (5R)-5-hydroxy-3-methylfuran-2(5H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C4 H3M sing 129 n n C3 C4 H3M doub 130 n n C3 C2 H3M sing 131 n n C4 C1 H3M sing 132 n n C2 O3 H3M sing 133 n n C2 O2 H3M sing 134 n n C1 O1 H3M doub 135 n n C1 O2 H3M sing 136 n n C5 H2 H3M sing 137 n n C5 H3 H3M sing 138 n n C5 H4 H3M sing 139 n n C3 H5 H3M sing 140 n n C2 H7 H3M sing 141 n n O3 H8 H3M sing 142 n n # _atom_sites.entry_id 3WIO _atom_sites.fract_transf_matrix[1][1] 0.02067 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011347 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008402 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 H3M A 1 401 401 H3M H3M . D 3 HOH A 1 501 501 HOH HOH . D 3 HOH A 2 502 502 HOH HOH . D 3 HOH A 3 503 503 HOH HOH . D 3 HOH A 4 504 504 HOH HOH . D 3 HOH A 5 505 505 HOH HOH . D 3 HOH A 6 506 506 HOH HOH . D 3 HOH A 7 507 507 HOH HOH . D 3 HOH A 8 508 508 HOH HOH . D 3 HOH A 9 509 509 HOH HOH . D 3 HOH A 10 510 510 HOH HOH . D 3 HOH A 11 511 511 HOH HOH . D 3 HOH A 12 512 512 HOH HOH . D 3 HOH A 13 513 513 HOH HOH . D 3 HOH A 14 514 514 HOH HOH . D 3 HOH A 15 515 515 HOH HOH . D 3 HOH A 16 516 516 HOH HOH . D 3 HOH A 17 517 517 HOH HOH . D 3 HOH A 18 518 518 HOH HOH . D 3 HOH A 19 519 519 HOH HOH . D 3 HOH A 20 520 520 HOH HOH . D 3 HOH A 21 521 521 HOH HOH . D 3 HOH A 22 522 522 HOH HOH . D 3 HOH A 23 523 523 HOH HOH . D 3 HOH A 24 524 524 HOH HOH . D 3 HOH A 25 525 525 HOH HOH . D 3 HOH A 26 526 526 HOH HOH . D 3 HOH A 27 527 527 HOH HOH . D 3 HOH A 28 528 528 HOH HOH . D 3 HOH A 29 529 529 HOH HOH . D 3 HOH A 30 530 530 HOH HOH . D 3 HOH A 31 531 531 HOH HOH . D 3 HOH A 32 532 532 HOH HOH . D 3 HOH A 33 533 533 HOH HOH . D 3 HOH A 34 534 534 HOH HOH . D 3 HOH A 35 535 535 HOH HOH . D 3 HOH A 36 536 536 HOH HOH . D 3 HOH A 37 537 537 HOH HOH . D 3 HOH A 38 538 538 HOH HOH . D 3 HOH A 39 539 539 HOH HOH . D 3 HOH A 40 540 540 HOH HOH . D 3 HOH A 41 541 541 HOH HOH . D 3 HOH A 42 542 542 HOH HOH . D 3 HOH A 43 543 543 HOH HOH . D 3 HOH A 44 544 544 HOH HOH . D 3 HOH A 45 545 545 HOH HOH . D 3 HOH A 46 546 546 HOH HOH . D 3 HOH A 47 547 547 HOH HOH . D 3 HOH A 48 548 548 HOH HOH . D 3 HOH A 49 549 549 HOH HOH . D 3 HOH A 50 550 550 HOH HOH . D 3 HOH A 51 551 551 HOH HOH . D 3 HOH A 52 552 552 HOH HOH . D 3 HOH A 53 553 553 HOH HOH . D 3 HOH A 54 554 554 HOH HOH . D 3 HOH A 55 555 555 HOH HOH . D 3 HOH A 56 556 556 HOH HOH . D 3 HOH A 57 557 557 HOH HOH . D 3 HOH A 58 558 558 HOH HOH . D 3 HOH A 59 559 559 HOH HOH . D 3 HOH A 60 560 560 HOH HOH . D 3 HOH A 61 561 561 HOH HOH . D 3 HOH A 62 562 562 HOH HOH . D 3 HOH A 63 563 563 HOH HOH . D 3 HOH A 64 564 564 HOH HOH . D 3 HOH A 65 565 565 HOH HOH . D 3 HOH A 66 566 566 HOH HOH . D 3 HOH A 67 567 567 HOH HOH . D 3 HOH A 68 568 568 HOH HOH . D 3 HOH A 69 569 569 HOH HOH . D 3 HOH A 70 570 570 HOH HOH . D 3 HOH A 71 571 571 HOH HOH . D 3 HOH A 72 572 572 HOH HOH . D 3 HOH A 73 573 573 HOH HOH . D 3 HOH A 74 574 574 HOH HOH . D 3 HOH A 75 575 575 HOH HOH . D 3 HOH A 76 576 576 HOH HOH . D 3 HOH A 77 577 577 HOH HOH . D 3 HOH A 78 578 578 HOH HOH . D 3 HOH A 79 579 579 HOH HOH . D 3 HOH A 80 580 580 HOH HOH . D 3 HOH A 81 581 581 HOH HOH . D 3 HOH A 82 582 582 HOH HOH . D 3 HOH A 83 583 583 HOH HOH . D 3 HOH A 84 584 584 HOH HOH . D 3 HOH A 85 585 585 HOH HOH . D 3 HOH A 86 586 586 HOH HOH . D 3 HOH A 87 587 587 HOH HOH . D 3 HOH A 88 588 588 HOH HOH . D 3 HOH A 89 589 589 HOH HOH . D 3 HOH A 90 590 590 HOH HOH . D 3 HOH A 91 591 591 HOH HOH . D 3 HOH A 92 592 592 HOH HOH . D 3 HOH A 93 593 593 HOH HOH . D 3 HOH A 94 594 594 HOH HOH . D 3 HOH A 95 595 595 HOH HOH . D 3 HOH A 96 596 596 HOH HOH . D 3 HOH A 97 597 597 HOH HOH . D 3 HOH A 98 598 598 HOH HOH . D 3 HOH A 99 599 599 HOH HOH . D 3 HOH A 100 600 600 HOH HOH . D 3 HOH A 101 601 601 HOH HOH . D 3 HOH A 102 602 602 HOH HOH . D 3 HOH A 103 603 603 HOH HOH . D 3 HOH A 104 604 604 HOH HOH . D 3 HOH A 105 605 605 HOH HOH . D 3 HOH A 106 606 606 HOH HOH . D 3 HOH A 107 607 607 HOH HOH . D 3 HOH A 108 608 608 HOH HOH . E 3 HOH B 1 401 401 HOH HOH . E 3 HOH B 2 402 402 HOH HOH . E 3 HOH B 3 403 403 HOH HOH . E 3 HOH B 4 404 404 HOH HOH . E 3 HOH B 5 405 405 HOH HOH . E 3 HOH B 6 406 406 HOH HOH . E 3 HOH B 7 407 407 HOH HOH . E 3 HOH B 8 408 408 HOH HOH . E 3 HOH B 9 409 409 HOH HOH . E 3 HOH B 10 410 410 HOH HOH . E 3 HOH B 11 411 411 HOH HOH . E 3 HOH B 12 412 412 HOH HOH . E 3 HOH B 13 413 413 HOH HOH . E 3 HOH B 14 414 414 HOH HOH . E 3 HOH B 15 415 415 HOH HOH . E 3 HOH B 16 416 416 HOH HOH . E 3 HOH B 17 417 417 HOH HOH . E 3 HOH B 18 418 418 HOH HOH . E 3 HOH B 19 419 419 HOH HOH . E 3 HOH B 20 420 420 HOH HOH . E 3 HOH B 21 421 421 HOH HOH . E 3 HOH B 22 422 422 HOH HOH . E 3 HOH B 23 423 423 HOH HOH . E 3 HOH B 24 424 424 HOH HOH . E 3 HOH B 25 425 425 HOH HOH . E 3 HOH B 26 426 426 HOH HOH . E 3 HOH B 27 427 427 HOH HOH . E 3 HOH B 28 428 428 HOH HOH . E 3 HOH B 29 429 429 HOH HOH . E 3 HOH B 30 430 430 HOH HOH . E 3 HOH B 31 431 431 HOH HOH . E 3 HOH B 32 432 432 HOH HOH . E 3 HOH B 33 433 433 HOH HOH . E 3 HOH B 34 434 434 HOH HOH . E 3 HOH B 35 435 435 HOH HOH . E 3 HOH B 36 436 436 HOH HOH . E 3 HOH B 37 437 437 HOH HOH . E 3 HOH B 38 438 438 HOH HOH . E 3 HOH B 39 439 439 HOH HOH . E 3 HOH B 40 440 440 HOH HOH . E 3 HOH B 41 441 441 HOH HOH . E 3 HOH B 42 442 442 HOH HOH . E 3 HOH B 43 443 443 HOH HOH . E 3 HOH B 44 444 444 HOH HOH . E 3 HOH B 45 445 445 HOH HOH . E 3 HOH B 46 446 446 HOH HOH . E 3 HOH B 47 447 447 HOH HOH . E 3 HOH B 48 448 448 HOH HOH . E 3 HOH B 49 449 449 HOH HOH . E 3 HOH B 50 450 450 HOH HOH . E 3 HOH B 51 451 451 HOH HOH . E 3 HOH B 52 452 452 HOH HOH . E 3 HOH B 53 453 453 HOH HOH . E 3 HOH B 54 454 454 HOH HOH . E 3 HOH B 55 455 455 HOH HOH . E 3 HOH B 56 456 456 HOH HOH . E 3 HOH B 57 457 457 HOH HOH . E 3 HOH B 58 458 458 HOH HOH . E 3 HOH B 59 459 459 HOH HOH . E 3 HOH B 60 460 460 HOH HOH . E 3 HOH B 61 461 461 HOH HOH . E 3 HOH B 62 462 462 HOH HOH . E 3 HOH B 63 463 463 HOH HOH . E 3 HOH B 64 464 464 HOH HOH . E 3 HOH B 65 465 465 HOH HOH . E 3 HOH B 66 466 466 HOH HOH . E 3 HOH B 67 467 467 HOH HOH . E 3 HOH B 68 468 468 HOH HOH . E 3 HOH B 69 469 469 HOH HOH . E 3 HOH B 70 470 470 HOH HOH . E 3 HOH B 71 471 471 HOH HOH . E 3 HOH B 72 472 472 HOH HOH . E 3 HOH B 73 473 473 HOH HOH . E 3 HOH B 74 474 474 HOH HOH . E 3 HOH B 75 475 475 HOH HOH . E 3 HOH B 76 476 476 HOH HOH . E 3 HOH B 77 477 477 HOH HOH . E 3 HOH B 78 478 478 HOH HOH . E 3 HOH B 79 479 479 HOH HOH . E 3 HOH B 80 480 480 HOH HOH . E 3 HOH B 81 481 481 HOH HOH . E 3 HOH B 82 482 482 HOH HOH . E 3 HOH B 83 483 483 HOH HOH . E 3 HOH B 84 484 484 HOH HOH . E 3 HOH B 85 485 485 HOH HOH . E 3 HOH B 86 486 486 HOH HOH . E 3 HOH B 87 487 487 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 H3M . . . C 2 -30.817 14.848 -19.568 1 41.06 ? O1 H3M 401 A 1 HETATM 2 C C1 H3M . . . C 2 -31.83 14.475 -20.151 1 39.77 ? C1 H3M 401 A 1 HETATM 3 C C4 H3M . . . C 2 -32.135 14.636 -21.569 1 38.67 ? C4 H3M 401 A 1 HETATM 4 C C5 H3M . . . C 2 -31.098 14.978 -22.578 1 37.9 ? C5 H3M 401 A 1 HETATM 5 C C3 H3M . . . C 2 -33.44 14.346 -21.762 1 38.17 ? C3 H3M 401 A 1 HETATM 6 C C2 H3M . . . C 2 -33.606 13.265 -20.707 1 37.12 ? C2 H3M 401 A 1 HETATM 7 O O2 H3M . . . C 2 -32.931 13.722 -19.541 1 37.86 ? O2 H3M 401 A 1 HETATM 8 O O3 H3M . . . C 2 -34.872 12.677 -20.43 1 38.47 ? O3 H3M 401 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #