data_3WJ4 # _model_server_result.job_id Fd8JV4QsVBHUG0PKPbJAbQ _model_server_result.datetime_utc '2024-12-26 19:08:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wj4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 3WJ4 # _exptl.entry_id 3WJ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 290.053 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description tributylstannanyl _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.68 _cell.angle_gamma 90 _cell.entry_id 3WJ4 _cell.length_a 56.338 _cell.length_b 88.286 _cell.length_c 57.509 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WJ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C12 H27 Sn' _chem_comp.formula_weight 290.053 _chem_comp.id TBY _chem_comp.mon_nstd_flag . _chem_comp.name tributylstannanyl _chem_comp.type non-polymer _chem_comp.pdbx_synonyms tributyltin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C10 TBY sing 290 n n C11 C12 TBY sing 291 n n C10 SN1 TBY sing 292 n n SN1 C2 TBY sing 293 n n SN1 C6 TBY sing 294 n n C2 C3 TBY sing 295 n n C3 C4 TBY sing 296 n n C4 C5 TBY sing 297 n n C6 C7 TBY sing 298 n n C7 C8 TBY sing 299 n n C8 C9 TBY sing 300 n n C12 C13 TBY sing 301 n n C11 H11 TBY sing 302 n n C11 H11A TBY sing 303 n n C10 H10 TBY sing 304 n n C10 H10A TBY sing 305 n n C2 H2 TBY sing 306 n n C2 H2A TBY sing 307 n n C3 H3 TBY sing 308 n n C3 H3A TBY sing 309 n n C4 H4 TBY sing 310 n n C4 H4A TBY sing 311 n n C5 H5 TBY sing 312 n n C5 H5A TBY sing 313 n n C5 H5B TBY sing 314 n n C6 H6 TBY sing 315 n n C6 H6A TBY sing 316 n n C7 H7 TBY sing 317 n n C7 H7A TBY sing 318 n n C8 H8 TBY sing 319 n n C8 H8A TBY sing 320 n n C9 H9 TBY sing 321 n n C9 H9A TBY sing 322 n n C9 H9B TBY sing 323 n n C12 H12 TBY sing 324 n n C12 H12A TBY sing 325 n n C13 H13 TBY sing 326 n n C13 H13A TBY sing 327 n n C13 H13B TBY sing 328 n n # _atom_sites.entry_id 3WJ4 _atom_sites.fract_transf_matrix[1][1] 0.01775 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000211 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011327 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01739 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TBY A 1 501 1 TBY TBY . D 2 TBY B 1 501 2 TBY TBY . E 3 HOH A 1 1001 1001 HOH HOH . E 3 HOH A 2 1002 1002 HOH HOH . E 3 HOH A 3 1003 1003 HOH HOH . E 3 HOH A 4 1004 1004 HOH HOH . E 3 HOH A 5 1005 1005 HOH HOH . E 3 HOH A 6 1006 1006 HOH HOH . E 3 HOH A 7 1007 1007 HOH HOH . E 3 HOH A 8 1008 1008 HOH HOH . E 3 HOH A 9 1009 1009 HOH HOH . E 3 HOH A 10 1010 1010 HOH HOH . E 3 HOH A 11 1011 1012 HOH HOH . E 3 HOH A 12 1012 1013 HOH HOH . E 3 HOH A 13 1013 1014 HOH HOH . E 3 HOH A 14 1014 1015 HOH HOH . E 3 HOH A 15 1015 1016 HOH HOH . E 3 HOH A 16 1016 1017 HOH HOH . E 3 HOH A 17 1017 1018 HOH HOH . E 3 HOH A 18 1018 1019 HOH HOH . E 3 HOH A 19 1019 1020 HOH HOH . E 3 HOH A 20 1020 1021 HOH HOH . E 3 HOH A 21 1021 1022 HOH HOH . E 3 HOH A 22 1022 1023 HOH HOH . E 3 HOH A 23 1023 1024 HOH HOH . E 3 HOH A 24 1024 1025 HOH HOH . E 3 HOH A 25 1025 1026 HOH HOH . E 3 HOH A 26 1026 1027 HOH HOH . E 3 HOH A 27 1027 1028 HOH HOH . E 3 HOH A 28 1028 1029 HOH HOH . E 3 HOH A 29 1029 1030 HOH HOH . E 3 HOH A 30 1030 1031 HOH HOH . E 3 HOH A 31 1031 1032 HOH HOH . E 3 HOH A 32 1032 1033 HOH HOH . E 3 HOH A 33 1033 1034 HOH HOH . E 3 HOH A 34 1034 1035 HOH HOH . E 3 HOH A 35 1035 1037 HOH HOH . E 3 HOH A 36 1036 1038 HOH HOH . E 3 HOH A 37 1037 1039 HOH HOH . E 3 HOH A 38 1038 1040 HOH HOH . E 3 HOH A 39 1039 1041 HOH HOH . E 3 HOH A 40 1040 1042 HOH HOH . E 3 HOH A 41 1041 1043 HOH HOH . E 3 HOH A 42 1042 1044 HOH HOH . E 3 HOH A 43 1043 1045 HOH HOH . E 3 HOH A 44 1044 1046 HOH HOH . E 3 HOH A 45 1045 1047 HOH HOH . E 3 HOH A 46 1046 1048 HOH HOH . E 3 HOH A 47 1047 1049 HOH HOH . E 3 HOH A 48 1048 1050 HOH HOH . E 3 HOH A 49 1049 1051 HOH HOH . E 3 HOH A 50 1050 1052 HOH HOH . E 3 HOH A 51 1051 1053 HOH HOH . E 3 HOH A 52 1052 1054 HOH HOH . E 3 HOH A 53 1053 1055 HOH HOH . E 3 HOH A 54 1054 1056 HOH HOH . E 3 HOH A 55 1055 1057 HOH HOH . E 3 HOH A 56 1056 1058 HOH HOH . E 3 HOH A 57 1057 1059 HOH HOH . E 3 HOH A 58 1058 1060 HOH HOH . E 3 HOH A 59 1059 1061 HOH HOH . E 3 HOH A 60 1060 1062 HOH HOH . E 3 HOH A 61 1061 1063 HOH HOH . E 3 HOH A 62 1062 1064 HOH HOH . E 3 HOH A 63 1063 1065 HOH HOH . E 3 HOH A 64 1064 1066 HOH HOH . E 3 HOH A 65 1065 1067 HOH HOH . E 3 HOH A 66 1066 1068 HOH HOH . E 3 HOH A 67 1067 1069 HOH HOH . E 3 HOH A 68 1068 1070 HOH HOH . E 3 HOH A 69 1069 1071 HOH HOH . E 3 HOH A 70 1070 1072 HOH HOH . E 3 HOH A 71 1071 1073 HOH HOH . E 3 HOH A 72 1072 1074 HOH HOH . E 3 HOH A 73 1073 1075 HOH HOH . E 3 HOH A 74 1074 1076 HOH HOH . E 3 HOH A 75 1075 1077 HOH HOH . E 3 HOH A 76 1076 1078 HOH HOH . E 3 HOH A 77 1077 1079 HOH HOH . E 3 HOH A 78 1078 1080 HOH HOH . E 3 HOH A 79 1079 1081 HOH HOH . E 3 HOH A 80 1080 1083 HOH HOH . E 3 HOH A 81 1081 1084 HOH HOH . E 3 HOH A 82 1082 1085 HOH HOH . E 3 HOH A 83 1083 1086 HOH HOH . E 3 HOH A 84 1084 1088 HOH HOH . E 3 HOH A 85 1085 1090 HOH HOH . E 3 HOH A 86 1086 1092 HOH HOH . E 3 HOH A 87 1087 1094 HOH HOH . E 3 HOH A 88 1088 1097 HOH HOH . E 3 HOH A 89 1089 1099 HOH HOH . E 3 HOH A 90 1090 1100 HOH HOH . E 3 HOH A 91 1091 1101 HOH HOH . E 3 HOH A 92 1092 1102 HOH HOH . E 3 HOH A 93 1093 1103 HOH HOH . E 3 HOH A 94 1094 1104 HOH HOH . E 3 HOH A 95 1095 1105 HOH HOH . E 3 HOH A 96 1096 1011 HOH HOH . E 3 HOH A 97 1097 1015 HOH HOH . E 3 HOH A 98 1098 1025 HOH HOH . F 3 HOH B 1 601 1011 HOH HOH . F 3 HOH B 2 602 1001 HOH HOH . F 3 HOH B 3 603 1002 HOH HOH . F 3 HOH B 4 604 1004 HOH HOH . F 3 HOH B 5 605 1006 HOH HOH . F 3 HOH B 6 606 1007 HOH HOH . F 3 HOH B 7 607 1010 HOH HOH . F 3 HOH B 8 608 1013 HOH HOH . F 3 HOH B 9 609 1014 HOH HOH . F 3 HOH B 10 610 1016 HOH HOH . F 3 HOH B 11 611 1017 HOH HOH . F 3 HOH B 12 612 1018 HOH HOH . F 3 HOH B 13 613 1019 HOH HOH . F 3 HOH B 14 614 1020 HOH HOH . F 3 HOH B 15 615 1021 HOH HOH . F 3 HOH B 16 616 1022 HOH HOH . F 3 HOH B 17 617 1023 HOH HOH . F 3 HOH B 18 618 1024 HOH HOH . F 3 HOH B 19 619 1026 HOH HOH . F 3 HOH B 20 620 1027 HOH HOH . F 3 HOH B 21 621 1028 HOH HOH . F 3 HOH B 22 622 1029 HOH HOH . F 3 HOH B 23 623 1030 HOH HOH . F 3 HOH B 24 624 1031 HOH HOH . F 3 HOH B 25 625 1032 HOH HOH . F 3 HOH B 26 626 1033 HOH HOH . F 3 HOH B 27 627 1034 HOH HOH . F 3 HOH B 28 628 1035 HOH HOH . F 3 HOH B 29 629 1036 HOH HOH . F 3 HOH B 30 630 1037 HOH HOH . F 3 HOH B 31 631 1038 HOH HOH . F 3 HOH B 32 632 1039 HOH HOH . F 3 HOH B 33 633 1040 HOH HOH . F 3 HOH B 34 634 1041 HOH HOH . F 3 HOH B 35 635 1042 HOH HOH . F 3 HOH B 36 636 1043 HOH HOH . F 3 HOH B 37 637 1044 HOH HOH . F 3 HOH B 38 638 1045 HOH HOH . F 3 HOH B 39 639 1046 HOH HOH . F 3 HOH B 40 640 1047 HOH HOH . F 3 HOH B 41 641 1048 HOH HOH . F 3 HOH B 42 642 1049 HOH HOH . F 3 HOH B 43 643 1050 HOH HOH . F 3 HOH B 44 644 1051 HOH HOH . F 3 HOH B 45 645 1052 HOH HOH . F 3 HOH B 46 646 1053 HOH HOH . F 3 HOH B 47 647 1054 HOH HOH . F 3 HOH B 48 648 1055 HOH HOH . F 3 HOH B 49 649 1056 HOH HOH . F 3 HOH B 50 650 1057 HOH HOH . F 3 HOH B 51 651 1058 HOH HOH . F 3 HOH B 52 652 1059 HOH HOH . F 3 HOH B 53 653 1060 HOH HOH . F 3 HOH B 54 654 1061 HOH HOH . F 3 HOH B 55 655 1062 HOH HOH . F 3 HOH B 56 656 1063 HOH HOH . F 3 HOH B 57 657 1064 HOH HOH . F 3 HOH B 58 658 1065 HOH HOH . F 3 HOH B 59 659 1066 HOH HOH . F 3 HOH B 60 660 1067 HOH HOH . F 3 HOH B 61 661 1068 HOH HOH . F 3 HOH B 62 662 1069 HOH HOH . F 3 HOH B 63 663 1070 HOH HOH . F 3 HOH B 64 664 1071 HOH HOH . F 3 HOH B 65 665 1072 HOH HOH . F 3 HOH B 66 666 1073 HOH HOH . F 3 HOH B 67 667 1074 HOH HOH . F 3 HOH B 68 668 1075 HOH HOH . F 3 HOH B 69 669 1076 HOH HOH . F 3 HOH B 70 670 1077 HOH HOH . F 3 HOH B 71 671 1078 HOH HOH . F 3 HOH B 72 672 1079 HOH HOH . F 3 HOH B 73 673 1080 HOH HOH . F 3 HOH B 74 674 1081 HOH HOH . F 3 HOH B 75 675 1082 HOH HOH . F 3 HOH B 76 676 1083 HOH HOH . F 3 HOH B 77 677 1084 HOH HOH . F 3 HOH B 78 678 1085 HOH HOH . F 3 HOH B 79 679 1086 HOH HOH . F 3 HOH B 80 680 1087 HOH HOH . F 3 HOH B 81 681 1088 HOH HOH . F 3 HOH B 82 682 1089 HOH HOH . F 3 HOH B 83 683 1090 HOH HOH . F 3 HOH B 84 684 1091 HOH HOH . F 3 HOH B 85 685 1092 HOH HOH . F 3 HOH B 86 686 1093 HOH HOH . F 3 HOH B 87 687 1094 HOH HOH . F 3 HOH B 88 688 1095 HOH HOH . F 3 HOH B 89 689 1096 HOH HOH . F 3 HOH B 90 690 1097 HOH HOH . F 3 HOH B 91 691 1098 HOH HOH . F 3 HOH B 92 692 1099 HOH HOH . F 3 HOH B 93 693 1100 HOH HOH . F 3 HOH B 94 694 1101 HOH HOH . F 3 HOH B 95 695 1102 HOH HOH . F 3 HOH B 96 696 1103 HOH HOH . F 3 HOH B 97 697 1104 HOH HOH . F 3 HOH B 98 698 1105 HOH HOH . F 3 HOH B 99 699 1106 HOH HOH . F 3 HOH B 100 700 1107 HOH HOH . F 3 HOH B 101 701 1108 HOH HOH . F 3 HOH B 102 702 1109 HOH HOH . F 3 HOH B 103 703 1110 HOH HOH . F 3 HOH B 104 704 1111 HOH HOH . F 3 HOH B 105 705 1112 HOH HOH . F 3 HOH B 106 706 1113 HOH HOH . F 3 HOH B 107 707 1114 HOH HOH . F 3 HOH B 108 708 1115 HOH HOH . F 3 HOH B 109 709 1116 HOH HOH . F 3 HOH B 110 710 1117 HOH HOH . F 3 HOH B 111 711 1118 HOH HOH . F 3 HOH B 112 712 1119 HOH HOH . F 3 HOH B 113 713 1120 HOH HOH . F 3 HOH B 114 714 1121 HOH HOH . F 3 HOH B 115 715 1122 HOH HOH . F 3 HOH B 116 716 1124 HOH HOH . F 3 HOH B 117 717 1125 HOH HOH . F 3 HOH B 118 718 1127 HOH HOH . F 3 HOH B 119 719 1129 HOH HOH . F 3 HOH B 120 720 1130 HOH HOH . F 3 HOH B 121 721 1131 HOH HOH . F 3 HOH B 122 722 1132 HOH HOH . F 3 HOH B 123 723 1133 HOH HOH . F 3 HOH B 124 724 1134 HOH HOH . F 3 HOH B 125 725 1135 HOH HOH . F 3 HOH B 126 726 1136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 TBY . A . D 2 -9.582 -11.347 18.134 0.5 22.84 ? C11 TBY 501 B 1 HETATM 2 C C11 TBY . B . D 2 -10.205 -12.405 23.144 0.35 24.88 ? C11 TBY 501 B 1 HETATM 3 C C10 TBY . A . D 2 -10.216 -10.988 19.472 0.5 24.81 ? C10 TBY 501 B 1 HETATM 4 C C10 TBY . B . D 2 -11.089 -11.178 23.194 0.35 24.34 ? C10 TBY 501 B 1 HETATM 5 SN SN1 TBY . A . D 2 -10.736 -12.492 20.314 0.5 27.14 ? SN1 TBY 501 B 1 HETATM 6 SN SN1 TBY . B . D 2 -12.033 -11.094 21.717 0.35 28.17 ? SN1 TBY 501 B 1 HETATM 7 C C2 TBY . A . D 2 -11.503 -12.066 21.885 0.5 21.17 ? C2 TBY 501 B 1 HETATM 8 C C2 TBY . B . D 2 -13.522 -10.527 22.453 0.35 21.5 ? C2 TBY 501 B 1 HETATM 9 C C3 TBY . A . D 2 -10.424 -11.692 22.893 0.5 17.67 ? C3 TBY 501 B 1 HETATM 10 C C3 TBY . B . D 2 -14.634 -11.57 22.52 0.35 16.05 ? C3 TBY 501 B 1 HETATM 11 C C4 TBY . A . D 2 -9.572 -12.903 23.256 0.5 7.02 ? C4 TBY 501 B 1 HETATM 12 C C4 TBY . B . D 2 -14.393 -12.559 23.65 0.35 7.81 ? C4 TBY 501 B 1 HETATM 13 C C5 TBY . A . D 2 -8.101 -12.61 23.055 0.5 15.23 ? C5 TBY 501 B 1 HETATM 14 C C5 TBY . B . D 2 -15.341 -13.736 23.626 0.35 5.14 ? C5 TBY 501 B 1 HETATM 15 C C6 TBY . A . D 2 -9.302 -13.539 20.611 0.5 25.23 ? C6 TBY 501 B 1 HETATM 16 C C6 TBY . B . D 2 -11.314 -10.017 20.524 0.35 22.92 ? C6 TBY 501 B 1 HETATM 17 C C7 TBY . A . D 2 -9.691 -15.001 20.423 0.5 27.74 ? C7 TBY 501 B 1 HETATM 18 C C7 TBY . B . D 2 -12.117 -8.721 20.582 0.35 20.66 ? C7 TBY 501 B 1 HETATM 19 C C8 TBY . A . D 2 -10.17 -15.26 18.999 0.5 27.59 ? C8 TBY 501 B 1 HETATM 20 C C8 TBY . B . D 2 -11.559 -7.628 19.713 0.35 18.42 ? C8 TBY 501 B 1 HETATM 21 C C9 TBY . A . D 2 -10.127 -16.736 18.673 0.5 29.93 ? C9 TBY 501 B 1 HETATM 22 C C9 TBY . B . D 2 -12.47 -6.438 19.839 0.35 17.27 ? C9 TBY 501 B 1 HETATM 23 C C12 TBY . A . D 2 -10.635 -11.823 17.14 0.5 18.59 ? C12 TBY 501 B 1 HETATM 24 C C12 TBY . B . D 2 -8.962 -12.024 22.372 0.35 23.33 ? C12 TBY 501 B 1 HETATM 25 C C13 TBY . A . D 2 -10.034 -12.018 15.766 0.5 18.09 ? C13 TBY 501 B 1 HETATM 26 C C13 TBY . B . D 2 -9.108 -10.625 21.801 0.35 21.46 ? C13 TBY 501 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 26 #