data_3WJN # _model_server_result.job_id Ni2jKak9izcWSNRi9-0rng _model_server_result.datetime_utc '2024-11-29 02:32:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wjn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 3WJN # _exptl.entry_id 3WJN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.392 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'S-[(2E,6E)-3,7,11-TRIMETHYLDODECA-2,6,10-TRIENYL] TRIHYDROGEN THIODIPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WJN _cell.length_a 116.742 _cell.length_b 128.239 _cell.length_c 46.54 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WJN _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H28 O6 P2 S' _chem_comp.formula_weight 398.392 _chem_comp.id FPS _chem_comp.mon_nstd_flag . _chem_comp.name 'S-[(2E,6E)-3,7,11-TRIMETHYLDODECA-2,6,10-TRIENYL] TRIHYDROGEN THIODIPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'FARNESYL THIOPYROPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 S1 FPS sing 83 n n C1 C2 FPS sing 84 n n C1 H11 FPS sing 85 n n C1 H12A FPS sing 86 n n S1 PA FPS sing 87 n n C2 C3 FPS doub 88 e n C2 H2 FPS sing 89 n n C3 C4 FPS sing 90 n n C3 C5 FPS sing 91 n n C4 H41 FPS sing 92 n n C4 H42 FPS sing 93 n n C4 H43 FPS sing 94 n n C5 C6 FPS sing 95 n n C5 H51 FPS sing 96 n n C5 H52 FPS sing 97 n n C6 C7 FPS sing 98 n n C6 H61 FPS sing 99 n n C6 H62 FPS sing 100 n n C7 C8 FPS doub 101 e n C7 H7 FPS sing 102 n n C8 C10 FPS sing 103 n n C8 C9 FPS sing 104 n n C10 C11 FPS sing 105 n n C10 H101 FPS sing 106 n n C10 H102 FPS sing 107 n n C9 H91 FPS sing 108 n n C9 H92 FPS sing 109 n n C9 H93 FPS sing 110 n n C11 C12 FPS sing 111 n n C11 H111 FPS sing 112 n n C11 H112 FPS sing 113 n n C12 C13 FPS doub 114 n n C12 H12 FPS sing 115 n n C13 C14 FPS sing 116 n n C13 C15 FPS sing 117 n n C14 H141 FPS sing 118 n n C14 H142 FPS sing 119 n n C14 H143 FPS sing 120 n n C15 H151 FPS sing 121 n n C15 H152 FPS sing 122 n n C15 H153 FPS sing 123 n n PA O1A FPS doub 124 n n PA O2A FPS sing 125 n n PA O3A FPS sing 126 n n O2A H2A FPS sing 127 n n O3A PB FPS sing 128 n n PB O1B FPS sing 129 n n PB O2B FPS doub 130 n n PB O3B FPS sing 131 n n O1B H1B FPS sing 132 n n O3B H3B FPS sing 133 n n # _atom_sites.entry_id 3WJN _atom_sites.fract_transf_matrix[1][1] 0.008566 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007798 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021487 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FPS A 1 901 901 FPS FPS . D 3 HOH A 1 1001 4 HOH HOH . D 3 HOH A 2 1002 7 HOH HOH . D 3 HOH A 3 1003 11 HOH HOH . D 3 HOH A 4 1004 13 HOH HOH . D 3 HOH A 5 1005 16 HOH HOH . D 3 HOH A 6 1006 17 HOH HOH . D 3 HOH A 7 1007 18 HOH HOH . D 3 HOH A 8 1008 20 HOH HOH . D 3 HOH A 9 1009 24 HOH HOH . D 3 HOH A 10 1010 29 HOH HOH . D 3 HOH A 11 1011 37 HOH HOH . D 3 HOH A 12 1012 49 HOH HOH . D 3 HOH A 13 1013 51 HOH HOH . D 3 HOH A 14 1014 53 HOH HOH . D 3 HOH A 15 1015 55 HOH HOH . D 3 HOH A 16 1016 57 HOH HOH . D 3 HOH A 17 1017 58 HOH HOH . D 3 HOH A 18 1018 61 HOH HOH . D 3 HOH A 19 1019 64 HOH HOH . D 3 HOH A 20 1020 65 HOH HOH . D 3 HOH A 21 1021 66 HOH HOH . D 3 HOH A 22 1022 69 HOH HOH . D 3 HOH A 23 1023 72 HOH HOH . D 3 HOH A 24 1024 77 HOH HOH . D 3 HOH A 25 1025 78 HOH HOH . D 3 HOH A 26 1026 83 HOH HOH . D 3 HOH A 27 1027 84 HOH HOH . D 3 HOH A 28 1028 85 HOH HOH . D 3 HOH A 29 1029 86 HOH HOH . D 3 HOH A 30 1030 87 HOH HOH . D 3 HOH A 31 1031 88 HOH HOH . D 3 HOH A 32 1032 89 HOH HOH . D 3 HOH A 33 1033 90 HOH HOH . D 3 HOH A 34 1034 91 HOH HOH . D 3 HOH A 35 1035 92 HOH HOH . D 3 HOH A 36 1036 93 HOH HOH . D 3 HOH A 37 1037 94 HOH HOH . D 3 HOH A 38 1038 95 HOH HOH . D 3 HOH A 39 1039 96 HOH HOH . D 3 HOH A 40 1040 97 HOH HOH . D 3 HOH A 41 1041 98 HOH HOH . D 3 HOH A 42 1042 99 HOH HOH . D 3 HOH A 43 1043 100 HOH HOH . D 3 HOH A 44 1044 101 HOH HOH . D 3 HOH A 45 1045 102 HOH HOH . D 3 HOH A 46 1046 122 HOH HOH . D 3 HOH A 47 1047 124 HOH HOH . D 3 HOH A 48 1048 125 HOH HOH . D 3 HOH A 49 1049 126 HOH HOH . D 3 HOH A 50 1050 127 HOH HOH . D 3 HOH A 51 1051 128 HOH HOH . D 3 HOH A 52 1052 129 HOH HOH . D 3 HOH A 53 1053 130 HOH HOH . D 3 HOH A 54 1054 131 HOH HOH . D 3 HOH A 55 1055 139 HOH HOH . D 3 HOH A 56 1056 141 HOH HOH . D 3 HOH A 57 1057 142 HOH HOH . D 3 HOH A 58 1058 143 HOH HOH . E 3 HOH B 1 401 1 HOH HOH . E 3 HOH B 2 402 2 HOH HOH . E 3 HOH B 3 403 3 HOH HOH . E 3 HOH B 4 404 5 HOH HOH . E 3 HOH B 5 405 6 HOH HOH . E 3 HOH B 6 406 8 HOH HOH . E 3 HOH B 7 407 9 HOH HOH . E 3 HOH B 8 408 10 HOH HOH . E 3 HOH B 9 409 12 HOH HOH . E 3 HOH B 10 410 14 HOH HOH . E 3 HOH B 11 411 15 HOH HOH . E 3 HOH B 12 412 19 HOH HOH . E 3 HOH B 13 413 21 HOH HOH . E 3 HOH B 14 414 22 HOH HOH . E 3 HOH B 15 415 23 HOH HOH . E 3 HOH B 16 416 25 HOH HOH . E 3 HOH B 17 417 26 HOH HOH . E 3 HOH B 18 418 27 HOH HOH . E 3 HOH B 19 419 28 HOH HOH . E 3 HOH B 20 420 30 HOH HOH . E 3 HOH B 21 421 31 HOH HOH . E 3 HOH B 22 422 32 HOH HOH . E 3 HOH B 23 423 33 HOH HOH . E 3 HOH B 24 424 34 HOH HOH . E 3 HOH B 25 425 35 HOH HOH . E 3 HOH B 26 426 36 HOH HOH . E 3 HOH B 27 427 38 HOH HOH . E 3 HOH B 28 428 39 HOH HOH . E 3 HOH B 29 429 40 HOH HOH . E 3 HOH B 30 430 41 HOH HOH . E 3 HOH B 31 431 42 HOH HOH . E 3 HOH B 32 432 43 HOH HOH . E 3 HOH B 33 433 44 HOH HOH . E 3 HOH B 34 434 45 HOH HOH . E 3 HOH B 35 435 46 HOH HOH . E 3 HOH B 36 436 47 HOH HOH . E 3 HOH B 37 437 48 HOH HOH . E 3 HOH B 38 438 50 HOH HOH . E 3 HOH B 39 439 52 HOH HOH . E 3 HOH B 40 440 54 HOH HOH . E 3 HOH B 41 441 56 HOH HOH . E 3 HOH B 42 442 59 HOH HOH . E 3 HOH B 43 443 60 HOH HOH . E 3 HOH B 44 444 62 HOH HOH . E 3 HOH B 45 445 63 HOH HOH . E 3 HOH B 46 446 67 HOH HOH . E 3 HOH B 47 447 68 HOH HOH . E 3 HOH B 48 448 70 HOH HOH . E 3 HOH B 49 449 71 HOH HOH . E 3 HOH B 50 450 73 HOH HOH . E 3 HOH B 51 451 74 HOH HOH . E 3 HOH B 52 452 75 HOH HOH . E 3 HOH B 53 453 76 HOH HOH . E 3 HOH B 54 454 79 HOH HOH . E 3 HOH B 55 455 80 HOH HOH . E 3 HOH B 56 456 81 HOH HOH . E 3 HOH B 57 457 82 HOH HOH . E 3 HOH B 58 458 103 HOH HOH . E 3 HOH B 59 459 104 HOH HOH . E 3 HOH B 60 460 105 HOH HOH . E 3 HOH B 61 461 106 HOH HOH . E 3 HOH B 62 462 107 HOH HOH . E 3 HOH B 63 463 108 HOH HOH . E 3 HOH B 64 464 109 HOH HOH . E 3 HOH B 65 465 110 HOH HOH . E 3 HOH B 66 466 111 HOH HOH . E 3 HOH B 67 467 112 HOH HOH . E 3 HOH B 68 468 113 HOH HOH . E 3 HOH B 69 469 114 HOH HOH . E 3 HOH B 70 470 115 HOH HOH . E 3 HOH B 71 471 116 HOH HOH . E 3 HOH B 72 472 117 HOH HOH . E 3 HOH B 73 473 118 HOH HOH . E 3 HOH B 74 474 119 HOH HOH . E 3 HOH B 75 475 120 HOH HOH . E 3 HOH B 76 476 121 HOH HOH . E 3 HOH B 77 477 123 HOH HOH . E 3 HOH B 78 478 132 HOH HOH . E 3 HOH B 79 479 133 HOH HOH . E 3 HOH B 80 480 134 HOH HOH . E 3 HOH B 81 481 135 HOH HOH . E 3 HOH B 82 482 136 HOH HOH . E 3 HOH B 83 483 137 HOH HOH . E 3 HOH B 84 484 138 HOH HOH . E 3 HOH B 85 485 140 HOH HOH . E 3 HOH B 86 486 144 HOH HOH . E 3 HOH B 87 487 145 HOH HOH . E 3 HOH B 88 488 146 HOH HOH . E 3 HOH B 89 489 147 HOH HOH . E 3 HOH B 90 490 148 HOH HOH . E 3 HOH B 91 491 149 HOH HOH . E 3 HOH B 92 492 150 HOH HOH . E 3 HOH B 93 493 151 HOH HOH . E 3 HOH B 94 494 152 HOH HOH . E 3 HOH B 95 495 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FPS . . . C 2 25.697 -0.56 3.934 1 110.9 ? C1 FPS 901 A 1 HETATM 2 S S1 FPS . . . C 2 24.317 0.439 4.603 1 113.56 ? S1 FPS 901 A 1 HETATM 3 C C2 FPS . . . C 2 25.983 -1.672 4.717 1 108.02 ? C2 FPS 901 A 1 HETATM 4 C C3 FPS . . . C 2 26.62 -2.823 4.266 1 105.85 ? C3 FPS 901 A 1 HETATM 5 C C4 FPS . . . C 2 27.047 -2.922 2.8 1 105.02 ? C4 FPS 901 A 1 HETATM 6 C C5 FPS . . . C 2 26.895 -3.993 5.213 1 104.13 ? C5 FPS 901 A 1 HETATM 7 C C6 FPS . . . C 2 25.601 -4.564 5.799 1 102.45 ? C6 FPS 901 A 1 HETATM 8 C C7 FPS . . . C 2 25.839 -5.751 6.479 1 100.81 ? C7 FPS 901 A 1 HETATM 9 C C8 FPS . . . C 2 24.912 -6.773 6.668 1 99.69 ? C8 FPS 901 A 1 HETATM 10 C C10 FPS . . . C 2 25.287 -8.044 7.432 1 97.6 ? C10 FPS 901 A 1 HETATM 11 C C9 FPS . . . C 2 23.5 -6.622 6.098 1 99.84 ? C9 FPS 901 A 1 HETATM 12 C C11 FPS . . . C 2 25.391 -9.223 6.462 1 97.29 ? C11 FPS 901 A 1 HETATM 13 C C12 FPS . . . C 2 25.526 -10.44 7.12 1 95.93 ? C12 FPS 901 A 1 HETATM 14 C C13 FPS . . . C 2 25.249 -11.685 6.567 1 95.86 ? C13 FPS 901 A 1 HETATM 15 C C14 FPS . . . C 2 25.434 -12.96 7.394 1 95.28 ? C14 FPS 901 A 1 HETATM 16 C C15 FPS . . . C 2 24.762 -11.788 5.12 1 95.27 ? C15 FPS 901 A 1 HETATM 17 P PA FPS . . . C 2 24.508 1.998 3.478 1 112.82 ? PA FPS 901 A 1 HETATM 18 O O1A FPS . . . C 2 25.509 2.988 4.258 1 112.83 ? O1A FPS 901 A 1 HETATM 19 O O2A FPS . . . C 2 23.204 2.64 3.192 1 114.1 ? O2A FPS 901 A 1 HETATM 20 O O3A FPS . . . C 2 25.289 1.507 2.158 1 112.82 ? O3A FPS 901 A 1 HETATM 21 P PB FPS . . . C 2 24.493 1.242 0.782 1 113.69 ? PB FPS 901 A 1 HETATM 22 O O1B FPS . . . C 2 25.186 -0.036 0.09 1 112.47 ? O1B FPS 901 A 1 HETATM 23 O O2B FPS . . . C 2 23.003 0.797 1.204 1 112.79 ? O2B FPS 901 A 1 HETATM 24 O O3B FPS . . . C 2 24.489 2.43 -0.1 1 113.47 ? O3B FPS 901 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #