data_3WK3
#
_model_server_result.job_id            Bb8-3utYuVjLFB93xbEvVA 
_model_server_result.datetime_utc      '2024-11-08 03:04:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3wk3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    3WK3 
#
_exptl.entry_id    3WK3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3WK3 
_cell.length_a            57.985 
_cell.length_b            103.466 
_cell.length_c            73.628 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3WK3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 103.466 73.628 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3WK3 
_atom_sites.fract_transf_matrix[1][1]    0.017246 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009665 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013582 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 O7E A 1 301 301 O7E O7E . 
C 3 GOL A 1 302 311 GOL GOL . 
D 3 GOL A 1 303 312 GOL GOL . 
E 4 HOH A 1 401 401 HOH HOH . 
E 4 HOH A 2 402 402 HOH HOH . 
E 4 HOH A 3 403 403 HOH HOH . 
E 4 HOH A 4 404 404 HOH HOH . 
E 4 HOH A 5 405 405 HOH HOH . 
E 4 HOH A 6 406 406 HOH HOH . 
E 4 HOH A 7 407 407 HOH HOH . 
E 4 HOH A 8 408 408 HOH HOH . 
E 4 HOH A 9 409 409 HOH HOH . 
E 4 HOH A 10 410 410 HOH HOH . 
E 4 HOH A 11 411 411 HOH HOH . 
E 4 HOH A 12 412 412 HOH HOH . 
E 4 HOH A 13 413 413 HOH HOH . 
E 4 HOH A 14 414 414 HOH HOH . 
E 4 HOH A 15 415 451 HOH HOH . 
E 4 HOH A 16 416 477 HOH HOH . 
E 4 HOH A 17 417 501 HOH HOH . 
E 4 HOH A 18 418 502 HOH HOH . 
E 4 HOH A 19 419 503 HOH HOH . 
E 4 HOH A 20 420 504 HOH HOH . 
E 4 HOH A 21 421 505 HOH HOH . 
E 4 HOH A 22 422 506 HOH HOH . 
E 4 HOH A 23 423 507 HOH HOH . 
E 4 HOH A 24 424 508 HOH HOH . 
E 4 HOH A 25 425 509 HOH HOH . 
E 4 HOH A 26 426 510 HOH HOH . 
E 4 HOH A 27 427 511 HOH HOH . 
E 4 HOH A 28 428 512 HOH HOH . 
E 4 HOH A 29 429 513 HOH HOH . 
E 4 HOH A 30 430 514 HOH HOH . 
E 4 HOH A 31 431 515 HOH HOH . 
E 4 HOH A 32 432 516 HOH HOH . 
E 4 HOH A 33 433 517 HOH HOH . 
E 4 HOH A 34 434 518 HOH HOH . 
E 4 HOH A 35 435 519 HOH HOH . 
E 4 HOH A 36 436 520 HOH HOH . 
E 4 HOH A 37 437 521 HOH HOH . 
E 4 HOH A 38 438 522 HOH HOH . 
E 4 HOH A 39 439 523 HOH HOH . 
E 4 HOH A 40 440 524 HOH HOH . 
E 4 HOH A 41 441 525 HOH HOH . 
E 4 HOH A 42 442 526 HOH HOH . 
E 4 HOH A 43 443 527 HOH HOH . 
E 4 HOH A 44 444 528 HOH HOH . 
E 4 HOH A 45 445 529 HOH HOH . 
E 4 HOH A 46 446 530 HOH HOH . 
E 4 HOH A 47 447 531 HOH HOH . 
E 4 HOH A 48 448 532 HOH HOH . 
E 4 HOH A 49 449 533 HOH HOH . 
E 4 HOH A 50 450 534 HOH HOH . 
E 4 HOH A 51 451 535 HOH HOH . 
E 4 HOH A 52 452 536 HOH HOH . 
E 4 HOH A 53 453 537 HOH HOH . 
E 4 HOH A 54 454 538 HOH HOH . 
E 4 HOH A 55 455 539 HOH HOH . 
E 4 HOH A 56 456 540 HOH HOH . 
E 4 HOH A 57 457 541 HOH HOH . 
E 4 HOH A 58 458 542 HOH HOH . 
E 4 HOH A 59 459 543 HOH HOH . 
E 4 HOH A 60 460 544 HOH HOH . 
E 4 HOH A 61 461 545 HOH HOH . 
E 4 HOH A 62 462 546 HOH HOH . 
E 4 HOH A 63 463 547 HOH HOH . 
E 4 HOH A 64 464 548 HOH HOH . 
E 4 HOH A 65 465 549 HOH HOH . 
E 4 HOH A 66 466 550 HOH HOH . 
E 4 HOH A 67 467 551 HOH HOH . 
E 4 HOH A 68 468 552 HOH HOH . 
E 4 HOH A 69 469 553 HOH HOH . 
E 4 HOH A 70 470 554 HOH HOH . 
E 4 HOH A 71 471 555 HOH HOH . 
E 4 HOH A 72 472 556 HOH HOH . 
E 4 HOH A 73 473 557 HOH HOH . 
E 4 HOH A 74 474 558 HOH HOH . 
E 4 HOH A 75 475 559 HOH HOH . 
E 4 HOH A 76 476 560 HOH HOH . 
E 4 HOH A 77 477 561 HOH HOH . 
E 4 HOH A 78 478 562 HOH HOH . 
E 4 HOH A 79 479 563 HOH HOH . 
E 4 HOH A 80 480 564 HOH HOH . 
E 4 HOH A 81 481 565 HOH HOH . 
E 4 HOH A 82 482 566 HOH HOH . 
E 4 HOH A 83 483 567 HOH HOH . 
E 4 HOH A 84 484 568 HOH HOH . 
E 4 HOH A 85 485 569 HOH HOH . 
E 4 HOH A 86 486 570 HOH HOH . 
E 4 HOH A 87 487 571 HOH HOH . 
E 4 HOH A 88 488 572 HOH HOH . 
E 4 HOH A 89 489 573 HOH HOH . 
E 4 HOH A 90 490 574 HOH HOH . 
E 4 HOH A 91 491 575 HOH HOH . 
E 4 HOH A 92 492 576 HOH HOH . 
E 4 HOH A 93 493 577 HOH HOH . 
E 4 HOH A 94 494 578 HOH HOH . 
E 4 HOH A 95 495 579 HOH HOH . 
E 4 HOH A 96 496 580 HOH HOH . 
E 4 HOH A 97 497 581 HOH HOH . 
E 4 HOH A 98 498 582 HOH HOH . 
E 4 HOH A 99 499 583 HOH HOH . 
E 4 HOH A 100 500 584 HOH HOH . 
E 4 HOH A 101 501 585 HOH HOH . 
E 4 HOH A 102 502 586 HOH HOH . 
E 4 HOH A 103 503 587 HOH HOH . 
E 4 HOH A 104 504 588 HOH HOH . 
E 4 HOH A 105 505 589 HOH HOH . 
E 4 HOH A 106 506 590 HOH HOH . 
E 4 HOH A 107 507 591 HOH HOH . 
E 4 HOH A 108 508 592 HOH HOH . 
E 4 HOH A 109 509 593 HOH HOH . 
E 4 HOH A 110 510 594 HOH HOH . 
E 4 HOH A 111 511 595 HOH HOH . 
E 4 HOH A 112 512 596 HOH HOH . 
E 4 HOH A 113 513 597 HOH HOH . 
E 4 HOH A 114 514 598 HOH HOH . 
E 4 HOH A 115 515 599 HOH HOH . 
E 4 HOH A 116 516 600 HOH HOH . 
E 4 HOH A 117 517 601 HOH HOH . 
E 4 HOH A 118 518 602 HOH HOH . 
E 4 HOH A 119 519 603 HOH HOH . 
E 4 HOH A 120 520 604 HOH HOH . 
E 4 HOH A 121 521 605 HOH HOH . 
E 4 HOH A 122 522 606 HOH HOH . 
E 4 HOH A 123 523 607 HOH HOH . 
E 4 HOH A 124 524 608 HOH HOH . 
E 4 HOH A 125 525 609 HOH HOH . 
E 4 HOH A 126 526 610 HOH HOH . 
E 4 HOH A 127 527 611 HOH HOH . 
E 4 HOH A 128 528 612 HOH HOH . 
E 4 HOH A 129 529 613 HOH HOH . 
E 4 HOH A 130 530 614 HOH HOH . 
E 4 HOH A 131 531 615 HOH HOH . 
E 4 HOH A 132 532 616 HOH HOH . 
E 4 HOH A 133 533 617 HOH HOH . 
E 4 HOH A 134 534 618 HOH HOH . 
E 4 HOH A 135 535 619 HOH HOH . 
E 4 HOH A 136 536 620 HOH HOH . 
E 4 HOH A 137 537 621 HOH HOH . 
E 4 HOH A 138 538 622 HOH HOH . 
E 4 HOH A 139 539 623 HOH HOH . 
E 4 HOH A 140 540 624 HOH HOH . 
E 4 HOH A 141 541 625 HOH HOH . 
E 4 HOH A 142 542 626 HOH HOH . 
E 4 HOH A 143 543 627 HOH HOH . 
E 4 HOH A 144 544 628 HOH HOH . 
E 4 HOH A 145 545 629 HOH HOH . 
E 4 HOH A 146 546 630 HOH HOH . 
E 4 HOH A 147 547 631 HOH HOH . 
E 4 HOH A 148 548 632 HOH HOH . 
E 4 HOH A 149 549 633 HOH HOH . 
E 4 HOH A 150 550 634 HOH HOH . 
E 4 HOH A 151 551 635 HOH HOH . 
E 4 HOH A 152 552 636 HOH HOH . 
E 4 HOH A 153 553 637 HOH HOH . 
E 4 HOH A 154 554 638 HOH HOH . 
E 4 HOH A 155 555 639 HOH HOH . 
E 4 HOH A 156 556 640 HOH HOH . 
E 4 HOH A 157 557 641 HOH HOH . 
E 4 HOH A 158 558 642 HOH HOH . 
E 4 HOH A 159 559 643 HOH HOH . 
E 4 HOH A 160 560 644 HOH HOH . 
E 4 HOH A 161 561 645 HOH HOH . 
E 4 HOH A 162 562 646 HOH HOH . 
E 4 HOH A 163 563 647 HOH HOH . 
E 4 HOH A 164 564 648 HOH HOH . 
E 4 HOH A 165 565 649 HOH HOH . 
E 4 HOH A 166 566 650 HOH HOH . 
E 4 HOH A 167 567 651 HOH HOH . 
E 4 HOH A 168 568 652 HOH HOH . 
E 4 HOH A 169 569 653 HOH HOH . 
E 4 HOH A 170 570 654 HOH HOH . 
E 4 HOH A 171 571 655 HOH HOH . 
E 4 HOH A 172 572 656 HOH HOH . 
E 4 HOH A 173 573 657 HOH HOH . 
E 4 HOH A 174 574 658 HOH HOH . 
E 4 HOH A 175 575 659 HOH HOH . 
E 4 HOH A 176 576 660 HOH HOH . 
E 4 HOH A 177 577 661 HOH HOH . 
E 4 HOH A 178 578 662 HOH HOH . 
E 4 HOH A 179 579 663 HOH HOH . 
E 4 HOH A 180 580 664 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 24.283 20.372 37.819 1 37.57 ? C1 GOL 303 A 1 
HETATM 2 O O1 GOL . . . D 3 24.132 19.279 36.944 1 43.58 ? O1 GOL 303 A 1 
HETATM 3 C C2 GOL . . . D 3 25.522 20.161 38.67 1 34.82 ? C2 GOL 303 A 1 
HETATM 4 O O2 GOL . . . D 3 25.182 19.442 39.848 1 38.94 ? O2 GOL 303 A 1 
HETATM 5 C C3 GOL . . . D 3 26.125 21.528 38.978 1 28.38 ? C3 GOL 303 A 1 
HETATM 6 O O3 GOL . . . D 3 26.766 21.576 40.238 1 16.18 ? O3 GOL 303 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           238 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           6 
#