data_3WK5 # _model_server_result.job_id xYMiIBBz9ZiUEfuqwV4ecw _model_server_result.datetime_utc '2024-11-24 16:35:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wk5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 3WK5 # _exptl.entry_id 3WK5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 210.296 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-cyclopentyl-N-(1,3-thiazol-2-yl)acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3WK5 _cell.length_a 91.93 _cell.length_b 91.93 _cell.length_c 243.847 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WK5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_455 -x+y-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -91.93 0 121.9235 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 9 A ASP 9 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc2 A O ASP 11 A ASP 11 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc3 A OD1 ASP 185 A ASP 185 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc4 B MG MG . A MG 601 1_555 C O1 PO4 . A PO4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? # _chem_comp.formula 'C10 H14 N2 O S' _chem_comp.formula_weight 210.296 _chem_comp.id S0C _chem_comp.mon_nstd_flag . _chem_comp.name 2-cyclopentyl-N-(1,3-thiazol-2-yl)acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C7 S0C doub 281 n y C6 S5 S0C sing 282 n y C7 N8 S0C sing 283 n y N8 C4 S0C doub 284 n y S5 C4 S0C sing 285 n y C4 N3 S0C sing 286 n n O2 C1 S0C doub 287 n n N3 C1 S0C sing 288 n n C1 C9 S0C sing 289 n n C9 C10 S0C sing 290 n n C10 C12 S0C sing 291 n n C10 C11 S0C sing 292 n n C12 C13 S0C sing 293 n n C11 C14 S0C sing 294 n n C13 C14 S0C sing 295 n n C7 H1 S0C sing 296 n n C6 H2 S0C sing 297 n n C14 H3 S0C sing 298 n n C14 H4 S0C sing 299 n n C13 H5 S0C sing 300 n n C13 H6 S0C sing 301 n n C11 H7 S0C sing 302 n n C11 H8 S0C sing 303 n n C12 H9 S0C sing 304 n n C12 H10 S0C sing 305 n n C10 H11 S0C sing 306 n n C9 H12 S0C sing 307 n n C9 H13 S0C sing 308 n n N3 H14 S0C sing 309 n n # _atom_sites.entry_id 3WK5 _atom_sites.fract_transf_matrix[1][1] 0.010878 _atom_sites.fract_transf_matrix[1][2] 0.00628 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012561 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004101 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 601 782 MG MG . C 3 PO4 A 1 602 783 PO4 PO4 . D 4 S0C A 1 603 1 S0C S0C . E 5 HOH A 1 701 1 HOH HOH . E 5 HOH A 2 702 2 HOH HOH . E 5 HOH A 3 703 3 HOH HOH . E 5 HOH A 4 704 4 HOH HOH . E 5 HOH A 5 705 5 HOH HOH . E 5 HOH A 6 706 6 HOH HOH . E 5 HOH A 7 707 7 HOH HOH . E 5 HOH A 8 708 8 HOH HOH . E 5 HOH A 9 709 9 HOH HOH . E 5 HOH A 10 710 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 S0C . . . D 4 -16.689 -7.106 61.408 1 66.47 ? C7 S0C 603 A 1 HETATM 2 C C6 S0C . . . D 4 -17.529 -6.021 61.337 1 66.73 ? C6 S0C 603 A 1 HETATM 3 C C4 S0C . . . D 4 -17.276 -7.004 63.544 1 72.01 ? C4 S0C 603 A 1 HETATM 4 C C1 S0C . . . D 4 -17.411 -8.546 65.393 1 65.55 ? C1 S0C 603 A 1 HETATM 5 C C14 S0C . . . D 4 -17.349 -10.493 69.875 1 53.05 ? C14 S0C 603 A 1 HETATM 6 C C13 S0C . . . D 4 -17.908 -11.596 69.015 1 51.32 ? C13 S0C 603 A 1 HETATM 7 C C11 S0C . . . D 4 -16.832 -9.415 68.952 1 54.04 ? C11 S0C 603 A 1 HETATM 8 C C12 S0C . . . D 4 -18.145 -11.015 67.651 1 50.55 ? C12 S0C 603 A 1 HETATM 9 C C10 S0C . . . D 4 -17.227 -9.821 67.549 1 58.51 ? C10 S0C 603 A 1 HETATM 10 C C9 S0C . . . D 4 -17.899 -8.675 66.812 1 64.14 ? C9 S0C 603 A 1 HETATM 11 N N8 S0C . . . D 4 -16.549 -7.656 62.657 1 70.96 ? N8 S0C 603 A 1 HETATM 12 N N3 S0C . . . D 4 -17.401 -7.246 64.918 1 68.78 ? N3 S0C 603 A 1 HETATM 13 O O2 S0C . . . D 4 -17.07 -9.526 64.753 1 67.28 ? O2 S0C 603 A 1 HETATM 14 S S5 S0C . . . D 4 -18.165 -5.681 62.893 1 67.74 ? S5 S0C 603 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #