data_3WK6 # _model_server_result.job_id C_EfzCC6upV21Xkdwr2JCg _model_server_result.datetime_utc '2024-10-27 14:24:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wk6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 3WK6 # _exptl.entry_id 3WK6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 220.334 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5R)-5-methyl-N-(2-phenylethyl)-4,5-dihydro-1,3-thiazol-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3WK6 _cell.length_a 92.952 _cell.length_b 92.952 _cell.length_c 243.795 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WK6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_455 -x+y-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -92.952 0 121.8975 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 9 A ASP 9 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc2 A O ASP 11 A ASP 11 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc3 A OD1 ASP 185 A ASP 185 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc4 B MG MG . A MG 601 1_555 C O1 PO4 . A PO4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? # _chem_comp.formula 'C12 H16 N2 S' _chem_comp.formula_weight 220.334 _chem_comp.id S0B _chem_comp.mon_nstd_flag . _chem_comp.name (5R)-5-methyl-N-(2-phenylethyl)-4,5-dihydro-1,3-thiazol-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C5 S0B sing 281 n n C7 C5 S0B sing 282 n n C7 N4 S0B sing 283 n n C5 S2 S0B sing 284 n n N4 C1 S0B doub 285 n n S2 C1 S0B sing 286 n n C1 N3 S0B sing 287 n n N3 C6 S0B sing 288 n n C6 C9 S0B sing 289 n n C9 C10 S0B sing 290 n n C12 C10 S0B doub 291 n y C12 C14 S0B sing 292 n y C10 C11 S0B sing 293 n y C14 C15 S0B doub 294 n y C11 C13 S0B doub 295 n y C15 C13 S0B sing 296 n y C15 H1 S0B sing 297 n n C13 H2 S0B sing 298 n n C14 H3 S0B sing 299 n n C11 H4 S0B sing 300 n n C12 H5 S0B sing 301 n n C7 H7 S0B sing 302 n n C7 H8 S0B sing 303 n n C5 H9 S0B sing 304 n n C8 H10 S0B sing 305 n n C8 H11 S0B sing 306 n n C8 H12 S0B sing 307 n n C9 H13 S0B sing 308 n n C9 H14 S0B sing 309 n n C6 H15 S0B sing 310 n n C6 H16 S0B sing 311 n n N3 H19 S0B sing 312 n n # _atom_sites.entry_id 3WK6 _atom_sites.fract_transf_matrix[1][1] 0.010758 _atom_sites.fract_transf_matrix[1][2] 0.006211 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012423 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004102 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 601 782 MG MG . C 3 PO4 A 1 602 783 PO4 PO4 . D 4 S0B A 1 603 1 S0B S0B . E 5 HOH A 1 701 1 HOH HOH . E 5 HOH A 2 702 2 HOH HOH . E 5 HOH A 3 703 3 HOH HOH . E 5 HOH A 4 704 4 HOH HOH . E 5 HOH A 5 705 5 HOH HOH . E 5 HOH A 6 706 6 HOH HOH . E 5 HOH A 7 707 7 HOH HOH . E 5 HOH A 8 708 8 HOH HOH . E 5 HOH A 9 709 9 HOH HOH . E 5 HOH A 10 710 10 HOH HOH . E 5 HOH A 11 711 11 HOH HOH . E 5 HOH A 12 712 12 HOH HOH . E 5 HOH A 13 713 13 HOH HOH . E 5 HOH A 14 714 14 HOH HOH . E 5 HOH A 15 715 15 HOH HOH . E 5 HOH A 16 716 16 HOH HOH . E 5 HOH A 17 717 17 HOH HOH . E 5 HOH A 18 718 18 HOH HOH . E 5 HOH A 19 719 19 HOH HOH . E 5 HOH A 20 720 20 HOH HOH . E 5 HOH A 21 721 21 HOH HOH . E 5 HOH A 22 722 22 HOH HOH . E 5 HOH A 23 723 23 HOH HOH . E 5 HOH A 24 724 24 HOH HOH . E 5 HOH A 25 725 25 HOH HOH . E 5 HOH A 26 726 26 HOH HOH . E 5 HOH A 27 727 27 HOH HOH . E 5 HOH A 28 728 28 HOH HOH . E 5 HOH A 29 729 29 HOH HOH . E 5 HOH A 30 730 30 HOH HOH . E 5 HOH A 31 731 31 HOH HOH . E 5 HOH A 32 732 32 HOH HOH . E 5 HOH A 33 733 33 HOH HOH . E 5 HOH A 34 734 34 HOH HOH . E 5 HOH A 35 735 35 HOH HOH . E 5 HOH A 36 736 36 HOH HOH . E 5 HOH A 37 737 37 HOH HOH . E 5 HOH A 38 738 38 HOH HOH . E 5 HOH A 39 739 39 HOH HOH . E 5 HOH A 40 740 40 HOH HOH . E 5 HOH A 41 741 41 HOH HOH . E 5 HOH A 42 742 42 HOH HOH . E 5 HOH A 43 743 43 HOH HOH . E 5 HOH A 44 744 44 HOH HOH . E 5 HOH A 45 745 45 HOH HOH . E 5 HOH A 46 746 46 HOH HOH . E 5 HOH A 47 747 47 HOH HOH . E 5 HOH A 48 748 48 HOH HOH . E 5 HOH A 49 749 49 HOH HOH . E 5 HOH A 50 750 50 HOH HOH . E 5 HOH A 51 751 51 HOH HOH . E 5 HOH A 52 752 52 HOH HOH . E 5 HOH A 53 753 53 HOH HOH . E 5 HOH A 54 754 54 HOH HOH . E 5 HOH A 55 755 55 HOH HOH . E 5 HOH A 56 756 56 HOH HOH . E 5 HOH A 57 757 57 HOH HOH . E 5 HOH A 58 758 58 HOH HOH . E 5 HOH A 59 759 59 HOH HOH . E 5 HOH A 60 760 60 HOH HOH . E 5 HOH A 61 761 61 HOH HOH . E 5 HOH A 62 762 62 HOH HOH . E 5 HOH A 63 763 63 HOH HOH . E 5 HOH A 64 764 64 HOH HOH . E 5 HOH A 65 765 65 HOH HOH . E 5 HOH A 66 766 66 HOH HOH . E 5 HOH A 67 767 67 HOH HOH . E 5 HOH A 68 768 68 HOH HOH . E 5 HOH A 69 769 69 HOH HOH . E 5 HOH A 70 770 70 HOH HOH . E 5 HOH A 71 771 71 HOH HOH . E 5 HOH A 72 772 72 HOH HOH . E 5 HOH A 73 773 73 HOH HOH . E 5 HOH A 74 774 74 HOH HOH . E 5 HOH A 75 775 75 HOH HOH . E 5 HOH A 76 776 76 HOH HOH . E 5 HOH A 77 777 77 HOH HOH . E 5 HOH A 78 778 78 HOH HOH . E 5 HOH A 79 779 79 HOH HOH . E 5 HOH A 80 780 80 HOH HOH . E 5 HOH A 81 781 81 HOH HOH . E 5 HOH A 82 782 82 HOH HOH . E 5 HOH A 83 783 83 HOH HOH . E 5 HOH A 84 784 84 HOH HOH . E 5 HOH A 85 785 85 HOH HOH . E 5 HOH A 86 786 86 HOH HOH . E 5 HOH A 87 787 87 HOH HOH . E 5 HOH A 88 788 88 HOH HOH . E 5 HOH A 89 789 89 HOH HOH . E 5 HOH A 90 790 90 HOH HOH . E 5 HOH A 91 791 91 HOH HOH . E 5 HOH A 92 792 92 HOH HOH . E 5 HOH A 93 793 93 HOH HOH . E 5 HOH A 94 794 94 HOH HOH . E 5 HOH A 95 795 95 HOH HOH . E 5 HOH A 96 796 96 HOH HOH . E 5 HOH A 97 797 97 HOH HOH . E 5 HOH A 98 798 98 HOH HOH . E 5 HOH A 99 799 99 HOH HOH . E 5 HOH A 100 800 100 HOH HOH . E 5 HOH A 101 801 101 HOH HOH . E 5 HOH A 102 802 102 HOH HOH . E 5 HOH A 103 803 103 HOH HOH . E 5 HOH A 104 804 104 HOH HOH . E 5 HOH A 105 805 105 HOH HOH . E 5 HOH A 106 806 106 HOH HOH . E 5 HOH A 107 807 107 HOH HOH . E 5 HOH A 108 808 108 HOH HOH . E 5 HOH A 109 809 109 HOH HOH . E 5 HOH A 110 810 110 HOH HOH . E 5 HOH A 111 811 111 HOH HOH . E 5 HOH A 112 812 112 HOH HOH . E 5 HOH A 113 813 113 HOH HOH . E 5 HOH A 114 814 114 HOH HOH . E 5 HOH A 115 815 115 HOH HOH . E 5 HOH A 116 816 116 HOH HOH . E 5 HOH A 117 817 117 HOH HOH . E 5 HOH A 118 818 118 HOH HOH . E 5 HOH A 119 819 119 HOH HOH . E 5 HOH A 120 820 120 HOH HOH . E 5 HOH A 121 821 121 HOH HOH . E 5 HOH A 122 822 122 HOH HOH . E 5 HOH A 123 823 123 HOH HOH . E 5 HOH A 124 824 124 HOH HOH . E 5 HOH A 125 825 125 HOH HOH . E 5 HOH A 126 826 126 HOH HOH . E 5 HOH A 127 827 127 HOH HOH . E 5 HOH A 128 828 128 HOH HOH . E 5 HOH A 129 829 129 HOH HOH . E 5 HOH A 130 830 130 HOH HOH . E 5 HOH A 131 831 131 HOH HOH . E 5 HOH A 132 832 132 HOH HOH . E 5 HOH A 133 833 133 HOH HOH . E 5 HOH A 134 834 134 HOH HOH . E 5 HOH A 135 835 135 HOH HOH . E 5 HOH A 136 836 136 HOH HOH . E 5 HOH A 137 837 137 HOH HOH . E 5 HOH A 138 838 138 HOH HOH . E 5 HOH A 139 839 139 HOH HOH . E 5 HOH A 140 840 140 HOH HOH . E 5 HOH A 141 841 141 HOH HOH . E 5 HOH A 142 842 142 HOH HOH . E 5 HOH A 143 843 143 HOH HOH . E 5 HOH A 144 844 144 HOH HOH . E 5 HOH A 145 845 145 HOH HOH . E 5 HOH A 146 846 146 HOH HOH . E 5 HOH A 147 847 147 HOH HOH . E 5 HOH A 148 848 148 HOH HOH . E 5 HOH A 149 849 149 HOH HOH . E 5 HOH A 150 850 150 HOH HOH . E 5 HOH A 151 851 151 HOH HOH . E 5 HOH A 152 852 152 HOH HOH . E 5 HOH A 153 853 153 HOH HOH . E 5 HOH A 154 854 154 HOH HOH . E 5 HOH A 155 855 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 S0B . . . D 4 -17.776 -13.64 68.916 1 36.27 ? C15 S0B 603 A 1 HETATM 2 C C13 S0B . . . D 4 -18.912 -12.866 69.094 1 35.32 ? C13 S0B 603 A 1 HETATM 3 C C14 S0B . . . D 4 -16.737 -13.099 68.22 1 36.1 ? C14 S0B 603 A 1 HETATM 4 C C11 S0B . . . D 4 -19.039 -11.581 68.615 1 31.15 ? C11 S0B 603 A 1 HETATM 5 C C12 S0B . . . D 4 -16.872 -11.805 67.736 1 36.74 ? C12 S0B 603 A 1 HETATM 6 C C10 S0B . . . D 4 -18.004 -11.039 67.915 1 35.62 ? C10 S0B 603 A 1 HETATM 7 C C1 S0B . . . D 4 -17.83 -7.985 64.145 1 35.29 ? C1 S0B 603 A 1 HETATM 8 C C7 S0B . . . D 4 -17.419 -7.976 61.909 1 41.23 ? C7 S0B 603 A 1 HETATM 9 C C5 S0B . . . D 4 -17.424 -6.512 62.162 1 40.58 ? C5 S0B 603 A 1 HETATM 10 C C8 S0B . . . D 4 -17.972 -5.855 60.944 1 33.86 ? C8 S0B 603 A 1 HETATM 11 C C9 S0B . . . D 4 -18.115 -9.639 67.389 1 36.48 ? C9 S0B 603 A 1 HETATM 12 C C6 S0B . . . D 4 -18.253 -9.598 65.886 1 35.22 ? C6 S0B 603 A 1 HETATM 13 N N4 S0B . . . D 4 -17.234 -8.655 63.23 1 48.09 ? N4 S0B 603 A 1 HETATM 14 N N3 S0B . . . D 4 -17.899 -8.265 65.476 1 33.19 ? N3 S0B 603 A 1 HETATM 15 S S2 S0B . . . D 4 -18.612 -6.555 63.53 1 38.91 ? S2 S0B 603 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #