data_3WK9 # _model_server_result.job_id b9VjLGQ0jt7HM_VB6eEoug _model_server_result.datetime_utc '2024-11-24 14:34:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wk9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 3WK9 # _exptl.entry_id 3WK9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 269.161 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(4-bromobenzyl)-1,3-thiazol-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3WK9 _cell.length_a 92.489 _cell.length_b 92.489 _cell.length_c 245.217 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WK9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_455 -x+y-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -92.489 0 122.6085 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 9 A ASP 9 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc2 A O ASP 11 A ASP 11 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc3 A OD1 ASP 185 A ASP 185 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc4 B MG MG . A MG 601 1_555 C O1 PO4 . A PO4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C10 H9 Br N2 S' _chem_comp.formula_weight 269.161 _chem_comp.id S0F _chem_comp.mon_nstd_flag . _chem_comp.name 5-(4-bromobenzyl)-1,3-thiazol-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 S0F sing 281 n n C7 C4 S0F sing 282 n n C13 C8 S0F doub 283 n y C13 C11 S0F sing 284 n y C8 C14 S0F sing 285 n y C11 C9 S0F doub 286 n y C14 C12 S0F doub 287 n y C9 C12 S0F sing 288 n y C9 BR1 S0F sing 289 n n C5 C4 S0F doub 290 n y C5 N2 S0F sing 291 n y C4 S3 S0F sing 292 n y N2 C1 S0F doub 293 n y S3 C1 S0F sing 294 n y C1 N6 S0F sing 295 n n C13 H1 S0F sing 296 n n C14 H2 S0F sing 297 n n C11 H3 S0F sing 298 n n C12 H4 S0F sing 299 n n C5 H5 S0F sing 300 n n C7 H6 S0F sing 301 n n C7 H7 S0F sing 302 n n N6 H8 S0F sing 303 n n N6 H9 S0F sing 304 n n # _atom_sites.entry_id 3WK9 _atom_sites.fract_transf_matrix[1][1] 0.010812 _atom_sites.fract_transf_matrix[1][2] 0.006242 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012485 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004078 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 601 782 MG MG . C 3 PO4 A 1 602 783 PO4 PO4 . D 4 S0F A 1 603 1 S0F S0F . E 5 HOH A 1 701 1 HOH HOH . E 5 HOH A 2 702 2 HOH HOH . E 5 HOH A 3 703 3 HOH HOH . E 5 HOH A 4 704 4 HOH HOH . E 5 HOH A 5 705 5 HOH HOH . E 5 HOH A 6 706 6 HOH HOH . E 5 HOH A 7 707 7 HOH HOH . E 5 HOH A 8 708 8 HOH HOH . E 5 HOH A 9 709 9 HOH HOH . E 5 HOH A 10 710 10 HOH HOH . E 5 HOH A 11 711 11 HOH HOH . E 5 HOH A 12 712 12 HOH HOH . E 5 HOH A 13 713 13 HOH HOH . E 5 HOH A 14 714 14 HOH HOH . E 5 HOH A 15 715 15 HOH HOH . E 5 HOH A 16 716 16 HOH HOH . E 5 HOH A 17 717 17 HOH HOH . E 5 HOH A 18 718 18 HOH HOH . E 5 HOH A 19 719 19 HOH HOH . E 5 HOH A 20 720 20 HOH HOH . E 5 HOH A 21 721 21 HOH HOH . E 5 HOH A 22 722 22 HOH HOH . E 5 HOH A 23 723 23 HOH HOH . E 5 HOH A 24 724 24 HOH HOH . E 5 HOH A 25 725 25 HOH HOH . E 5 HOH A 26 726 26 HOH HOH . E 5 HOH A 27 727 27 HOH HOH . E 5 HOH A 28 728 28 HOH HOH . E 5 HOH A 29 729 29 HOH HOH . E 5 HOH A 30 730 30 HOH HOH . E 5 HOH A 31 731 31 HOH HOH . E 5 HOH A 32 732 32 HOH HOH . E 5 HOH A 33 733 33 HOH HOH . E 5 HOH A 34 734 34 HOH HOH . E 5 HOH A 35 735 35 HOH HOH . E 5 HOH A 36 736 36 HOH HOH . E 5 HOH A 37 737 37 HOH HOH . E 5 HOH A 38 738 38 HOH HOH . E 5 HOH A 39 739 39 HOH HOH . E 5 HOH A 40 740 40 HOH HOH . E 5 HOH A 41 741 41 HOH HOH . E 5 HOH A 42 742 42 HOH HOH . E 5 HOH A 43 743 43 HOH HOH . E 5 HOH A 44 744 44 HOH HOH . E 5 HOH A 45 745 45 HOH HOH . E 5 HOH A 46 746 46 HOH HOH . E 5 HOH A 47 747 47 HOH HOH . E 5 HOH A 48 748 48 HOH HOH . E 5 HOH A 49 749 49 HOH HOH . E 5 HOH A 50 750 50 HOH HOH . E 5 HOH A 51 751 51 HOH HOH . E 5 HOH A 52 752 52 HOH HOH . E 5 HOH A 53 753 53 HOH HOH . E 5 HOH A 54 754 54 HOH HOH . E 5 HOH A 55 755 55 HOH HOH . E 5 HOH A 56 756 56 HOH HOH . E 5 HOH A 57 757 57 HOH HOH . E 5 HOH A 58 758 58 HOH HOH . E 5 HOH A 59 759 59 HOH HOH . E 5 HOH A 60 760 60 HOH HOH . E 5 HOH A 61 761 61 HOH HOH . E 5 HOH A 62 762 62 HOH HOH . E 5 HOH A 63 763 63 HOH HOH . E 5 HOH A 64 764 64 HOH HOH . E 5 HOH A 65 765 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 S0F . . . D 4 -16.468 -12.091 68.497 1 61.7 ? C13 S0F 603 A 1 HETATM 2 C C14 S0F . . . D 4 -18.84 -11.821 68.741 1 46.86 ? C14 S0F 603 A 1 HETATM 3 C C11 S0F . . . D 4 -16.578 -13.453 68.663 1 59.23 ? C11 S0F 603 A 1 HETATM 4 C C12 S0F . . . D 4 -18.931 -13.171 68.902 1 45.66 ? C12 S0F 603 A 1 HETATM 5 C C5 S0F . . . D 4 -16.368 -7.85 68.939 1 51.54 ? C5 S0F 603 A 1 HETATM 6 C C8 S0F . . . D 4 -17.595 -11.31 68.537 1 53.66 ? C8 S0F 603 A 1 HETATM 7 C C9 S0F . . . D 4 -17.828 -14.009 68.857 1 64.4 ? C9 S0F 603 A 1 HETATM 8 C C4 S0F . . . D 4 -16.873 -9.06 69.313 1 62.52 ? C4 S0F 603 A 1 HETATM 9 C C1 S0F . . . D 4 -15.886 -7.817 71.065 1 63.92 ? C1 S0F 603 A 1 HETATM 10 C C7 S0F . . . D 4 -17.529 -9.889 68.331 1 55.85 ? C7 S0F 603 A 1 HETATM 11 N N2 S0F . . . D 4 -15.808 -7.153 69.943 1 56.71 ? N2 S0F 603 A 1 HETATM 12 N N6 S0F . . . D 4 -15.366 -7.22 72.156 1 59.88 ? N6 S0F 603 A 1 HETATM 13 S S3 S0F . . . D 4 -16.648 -9.384 70.995 1 78.13 ? S3 S0F 603 A 1 HETATM 14 BR BR1 S0F . . . D 4 -18.078 -15.946 69.07 1 61.86 ? BR1 S0F 603 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #