data_3WKD # _model_server_result.job_id jtgCNU3UkoNdAE_tn1yqGA _model_server_result.datetime_utc '2024-11-24 17:52:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wkd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 3WKD # _exptl.entry_id 3WKD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 288.365 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[2-(morpholin-4-yl)phenyl]thiophene-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3WKD _cell.length_a 92.786 _cell.length_b 92.786 _cell.length_c 245.269 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WKD _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_455 -x+y-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -92.786 0 122.6345 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 9 A ASP 9 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc2 A O ASP 11 A ASP 11 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc3 A OD1 ASP 185 A ASP 185 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc4 B MG MG . A MG 601 1_555 C O1 PO4 . A PO4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? # _chem_comp.formula 'C15 H16 N2 O2 S' _chem_comp.formula_weight 288.365 _chem_comp.id S0K _chem_comp.mon_nstd_flag . _chem_comp.name N-[2-(morpholin-4-yl)phenyl]thiophene-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C13 S0K sing 281 n n C8 N3 S0K sing 282 n n O16 C13 S0K sing 283 n n O16 C12 S0K sing 284 n n C4 C9 S0K doub 285 n y C4 C1 S0K sing 286 n y C9 C11 S0K sing 287 n y C7 N3 S0K sing 288 n n C7 C12 S0K sing 289 n n N3 C1 S0K sing 290 n n C1 C2 S0K doub 291 n y C11 C6 S0K doub 292 n y O15 C10 S0K doub 293 n n C2 C6 S0K sing 294 n y C2 N5 S0K sing 295 n n C10 N5 S0K sing 296 n n C10 C14 S0K sing 297 n n C14 C18 S0K doub 298 n y C14 C17 S0K sing 299 n y C18 S20 S0K sing 300 n y C17 C19 S0K doub 301 n y S20 C19 S0K sing 302 n y C9 H1 S0K sing 303 n n C11 H2 S0K sing 304 n n C4 H3 S0K sing 305 n n C6 H4 S0K sing 306 n n C17 H5 S0K sing 307 n n C19 H6 S0K sing 308 n n C18 H7 S0K sing 309 n n C7 H8 S0K sing 310 n n C7 H9 S0K sing 311 n n C8 H10 S0K sing 312 n n C8 H11 S0K sing 313 n n C12 H12 S0K sing 314 n n C12 H13 S0K sing 315 n n C13 H14 S0K sing 316 n n C13 H15 S0K sing 317 n n N5 H16 S0K sing 318 n n # _atom_sites.entry_id 3WKD _atom_sites.fract_transf_matrix[1][1] 0.010777 _atom_sites.fract_transf_matrix[1][2] 0.006222 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012445 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004077 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 601 782 MG MG . C 3 PO4 A 1 602 783 PO4 PO4 . D 4 S0K A 1 603 1 S0K S0K . E 5 HOH A 1 701 1 HOH HOH . E 5 HOH A 2 702 2 HOH HOH . E 5 HOH A 3 703 3 HOH HOH . E 5 HOH A 4 704 4 HOH HOH . E 5 HOH A 5 705 5 HOH HOH . E 5 HOH A 6 706 6 HOH HOH . E 5 HOH A 7 707 7 HOH HOH . E 5 HOH A 8 708 8 HOH HOH . E 5 HOH A 9 709 9 HOH HOH . E 5 HOH A 10 710 10 HOH HOH . E 5 HOH A 11 711 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 S0K . . . D 4 -18.546 -3.783 53.394 1 30.83 ? C9 S0K 603 A 1 HETATM 2 C C11 S0K . . . D 4 -19.093 -4.717 54.246 1 31.06 ? C11 S0K 603 A 1 HETATM 3 C C4 S0K . . . D 4 -17.185 -3.658 53.305 1 32.73 ? C4 S0K 603 A 1 HETATM 4 C C6 S0K . . . D 4 -18.288 -5.528 55.006 1 33.07 ? C6 S0K 603 A 1 HETATM 5 C C17 S0K . . . D 4 -14.878 -7.673 57.766 1 32.49 ? C17 S0K 603 A 1 HETATM 6 C C19 S0K . . . D 4 -14.27 -8.603 58.602 1 30.77 ? C19 S0K 603 A 1 HETATM 7 C C18 S0K . . . D 4 -15.425 -9.652 56.684 1 29.45 ? C18 S0K 603 A 1 HETATM 8 C C14 S0K . . . D 4 -15.533 -8.276 56.65 1 29.96 ? C14 S0K 603 A 1 HETATM 9 C C1 S0K . . . D 4 -16.373 -4.479 54.066 1 34.7 ? C1 S0K 603 A 1 HETATM 10 C C2 S0K . . . D 4 -16.914 -5.419 54.921 1 32.24 ? C2 S0K 603 A 1 HETATM 11 C C10 S0K . . . D 4 -16.256 -7.618 55.615 1 32.43 ? C10 S0K 603 A 1 HETATM 12 C C7 S0K . . . D 4 -14.63 -2.99 53.672 1 35.83 ? C7 S0K 603 A 1 HETATM 13 C C8 S0K . . . D 4 -14.372 -5.441 53.227 1 33.92 ? C8 S0K 603 A 1 HETATM 14 C C12 S0K . . . D 4 -13.183 -2.905 54.022 1 33 ? C12 S0K 603 A 1 HETATM 15 C C13 S0K . . . D 4 -12.893 -5.27 53.493 1 35.87 ? C13 S0K 603 A 1 HETATM 16 N N3 S0K . . . D 4 -14.991 -4.358 53.967 1 37.8 ? N3 S0K 603 A 1 HETATM 17 N N5 S0K . . . D 4 -16.089 -6.258 55.698 1 28.93 ? N5 S0K 603 A 1 HETATM 18 O O15 S0K . . . D 4 -16.983 -8.238 54.822 1 32.76 ? O15 S0K 603 A 1 HETATM 19 O O16 S0K . . . D 4 -12.526 -3.898 53.254 1 33.66 ? O16 S0K 603 A 1 HETATM 20 S S20 S0K . . . D 4 -14.524 -10.23 58.047 1 30.56 ? S20 S0K 603 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 20 #