data_3WKE # _model_server_result.job_id zujkiMEiXb7pXoolC3FSzQ _model_server_result.datetime_utc '2024-11-24 16:59:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wke # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 3WKE # _exptl.entry_id 3WKE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3WKE _cell.length_a 91.948 _cell.length_b 91.948 _cell.length_c 243.942 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WKE _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_455 -x+y-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -91.948 0 121.971 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 9 A ASP 9 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc2 A O ASP 11 A ASP 11 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc3 A OD1 ASP 185 A ASP 185 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc4 B MG MG . A MG 601 1_555 C O1 PO4 . A PO4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3WKE _atom_sites.fract_transf_matrix[1][1] 0.010876 _atom_sites.fract_transf_matrix[1][2] 0.006279 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012558 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004099 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 601 782 MG MG . C 3 PO4 A 1 602 783 PO4 PO4 . D 4 AUB A 1 603 1 AUB AUB . E 5 HOH A 1 701 1 HOH HOH . E 5 HOH A 2 702 2 HOH HOH . E 5 HOH A 3 703 3 HOH HOH . E 5 HOH A 4 704 4 HOH HOH . E 5 HOH A 5 705 5 HOH HOH . E 5 HOH A 6 706 6 HOH HOH . E 5 HOH A 7 707 7 HOH HOH . E 5 HOH A 8 708 8 HOH HOH . E 5 HOH A 9 709 9 HOH HOH . E 5 HOH A 10 710 12 HOH HOH . E 5 HOH A 11 711 13 HOH HOH . E 5 HOH A 12 712 14 HOH HOH . E 5 HOH A 13 713 15 HOH HOH . E 5 HOH A 14 714 16 HOH HOH . E 5 HOH A 15 715 17 HOH HOH . E 5 HOH A 16 716 18 HOH HOH . E 5 HOH A 17 717 19 HOH HOH . E 5 HOH A 18 718 20 HOH HOH . E 5 HOH A 19 719 21 HOH HOH . E 5 HOH A 20 720 22 HOH HOH . E 5 HOH A 21 721 23 HOH HOH . E 5 HOH A 22 722 24 HOH HOH . E 5 HOH A 23 723 25 HOH HOH . E 5 HOH A 24 724 26 HOH HOH . E 5 HOH A 25 725 27 HOH HOH . E 5 HOH A 26 726 28 HOH HOH . E 5 HOH A 27 727 29 HOH HOH . E 5 HOH A 28 728 30 HOH HOH . E 5 HOH A 29 729 31 HOH HOH . E 5 HOH A 30 730 32 HOH HOH . E 5 HOH A 31 731 33 HOH HOH . E 5 HOH A 32 732 34 HOH HOH . E 5 HOH A 33 733 35 HOH HOH . E 5 HOH A 34 734 36 HOH HOH . E 5 HOH A 35 735 37 HOH HOH . E 5 HOH A 36 736 38 HOH HOH . E 5 HOH A 37 737 39 HOH HOH . E 5 HOH A 38 738 40 HOH HOH . E 5 HOH A 39 739 41 HOH HOH . E 5 HOH A 40 740 42 HOH HOH . E 5 HOH A 41 741 43 HOH HOH . E 5 HOH A 42 742 44 HOH HOH . E 5 HOH A 43 743 45 HOH HOH . E 5 HOH A 44 744 46 HOH HOH . E 5 HOH A 45 745 47 HOH HOH . E 5 HOH A 46 746 48 HOH HOH . E 5 HOH A 47 747 49 HOH HOH . E 5 HOH A 48 748 50 HOH HOH . E 5 HOH A 49 749 51 HOH HOH . E 5 HOH A 50 750 52 HOH HOH . E 5 HOH A 51 751 53 HOH HOH . E 5 HOH A 52 752 54 HOH HOH . E 5 HOH A 53 753 55 HOH HOH . E 5 HOH A 54 754 56 HOH HOH . E 5 HOH A 55 755 57 HOH HOH . E 5 HOH A 56 756 59 HOH HOH . E 5 HOH A 57 757 60 HOH HOH . E 5 HOH A 58 758 61 HOH HOH . E 5 HOH A 59 759 62 HOH HOH . E 5 HOH A 60 760 63 HOH HOH . E 5 HOH A 61 761 64 HOH HOH . E 5 HOH A 62 762 65 HOH HOH . E 5 HOH A 63 763 66 HOH HOH . E 5 HOH A 64 764 67 HOH HOH . E 5 HOH A 65 765 68 HOH HOH . E 5 HOH A 66 766 69 HOH HOH . E 5 HOH A 67 767 70 HOH HOH . E 5 HOH A 68 768 71 HOH HOH . E 5 HOH A 69 769 72 HOH HOH . E 5 HOH A 70 770 73 HOH HOH . E 5 HOH A 71 771 74 HOH HOH . E 5 HOH A 72 772 75 HOH HOH . E 5 HOH A 73 773 76 HOH HOH . E 5 HOH A 74 774 77 HOH HOH . E 5 HOH A 75 775 78 HOH HOH . E 5 HOH A 76 776 79 HOH HOH . E 5 HOH A 77 777 80 HOH HOH . E 5 HOH A 78 778 81 HOH HOH . E 5 HOH A 79 779 82 HOH HOH . E 5 HOH A 80 780 83 HOH HOH . E 5 HOH A 81 781 84 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -57.057 _atom_site.Cartn_y 11.256 _atom_site.Cartn_z 92.634 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 55.44 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 601 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #