data_3WKE
#
_model_server_result.job_id            Y2vJDbFXU748no2tN22tLg 
_model_server_result.datetime_utc      '2024-11-24 16:27:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3wke 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":603}' 
#
_entry.id    3WKE 
#
_exptl.entry_id    3WKE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              412.522 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-[(trans-4-{[(3s,5s,7s)-tricyclo[3.3.1.1~3,7~]dec-1-ylcarbamoyl]amino}cyclohexyl)oxy]benzoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3WKE 
_cell.length_a            91.948 
_cell.length_b            91.948 
_cell.length_c            243.942 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3WKE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 11_455 -x+y-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -91.948 0 121.971 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 9 A ASP 9 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc2 A O ASP 11 A ASP 11 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc3 A OD1 ASP 185 A ASP 185 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc4 B MG MG . A MG 601 1_555 C O1 PO4 . A PO4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? 
#
_chem_comp.formula           'C24 H32 N2 O4' 
_chem_comp.formula_weight    412.522 
_chem_comp.id                AUB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-[(trans-4-{[(3s,5s,7s)-tricyclo[3.3.1.1~3,7~]dec-1-ylcarbamoyl]amino}cyclohexyl)oxy]benzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C6 C1 AUB sing 70 n n 
C6 C5 AUB sing 71 n n 
C1 C9 AUB sing 72 n n 
C1 C2 AUB sing 73 n n 
C9 C3 AUB sing 74 n n 
C5 C4 AUB sing 75 n n 
C5 C10 AUB sing 76 n n 
C4 C3 AUB sing 77 n n 
C2 C7 AUB sing 78 n n 
C3 C8 AUB sing 79 n n 
C10 C7 AUB sing 80 n n 
C7 C8 AUB sing 81 n n 
C7 N11 AUB sing 82 n n 
N11 C26 AUB sing 83 n n 
O27 C26 AUB doub 84 n n 
C26 N18 AUB sing 85 n n 
N18 C13 AUB sing 86 n n 
C13 C14 AUB sing 87 n n 
C13 C12 AUB sing 88 n n 
C14 C15 AUB sing 89 n n 
C12 C17 AUB sing 90 n n 
C15 C16 AUB sing 91 n n 
C17 C16 AUB sing 92 n n 
C16 O19 AUB sing 93 n n 
O19 C20 AUB sing 94 n n 
C20 C21 AUB doub 95 n y 
C20 C25 AUB sing 96 n y 
C21 C22 AUB sing 97 n y 
C25 C24 AUB doub 98 n y 
C22 C23 AUB doub 99 n y 
C24 C23 AUB sing 100 n y 
C23 C28 AUB sing 101 n n 
C28 O29 AUB doub 102 n n 
C28 O30 AUB sing 103 n n 
C22 H1 AUB sing 104 n n 
C24 H2 AUB sing 105 n n 
C21 H3 AUB sing 106 n n 
C25 H4 AUB sing 107 n n 
C14 H5 AUB sing 108 n n 
C14 H6 AUB sing 109 n n 
C12 H7 AUB sing 110 n n 
C12 H8 AUB sing 111 n n 
C15 H9 AUB sing 112 n n 
C15 H10 AUB sing 113 n n 
C17 H11 AUB sing 114 n n 
C17 H12 AUB sing 115 n n 
C6 H13 AUB sing 116 n n 
C6 H14 AUB sing 117 n n 
C9 H15 AUB sing 118 n n 
C9 H16 AUB sing 119 n n 
C4 H17 AUB sing 120 n n 
C4 H18 AUB sing 121 n n 
C2 H19 AUB sing 122 n n 
C2 H20 AUB sing 123 n n 
C10 H21 AUB sing 124 n n 
C10 H22 AUB sing 125 n n 
C8 H23 AUB sing 126 n n 
C8 H24 AUB sing 127 n n 
C1 H25 AUB sing 128 n n 
C5 H26 AUB sing 129 n n 
C3 H27 AUB sing 130 n n 
C13 H28 AUB sing 131 n n 
C16 H29 AUB sing 132 n n 
N18 H30 AUB sing 133 n n 
N11 H31 AUB sing 134 n n 
O30 H32 AUB sing 135 n n 
#
_atom_sites.entry_id                     3WKE 
_atom_sites.fract_transf_matrix[1][1]    0.010876 
_atom_sites.fract_transf_matrix[1][2]    0.006279 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012558 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004099 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 601 782 MG MG . 
C 3 PO4 A 1 602 783 PO4 PO4 . 
D 4 AUB A 1 603 1 AUB AUB . 
E 5 HOH A 1 701 1 HOH HOH . 
E 5 HOH A 2 702 2 HOH HOH . 
E 5 HOH A 3 703 3 HOH HOH . 
E 5 HOH A 4 704 4 HOH HOH . 
E 5 HOH A 5 705 5 HOH HOH . 
E 5 HOH A 6 706 6 HOH HOH . 
E 5 HOH A 7 707 7 HOH HOH . 
E 5 HOH A 8 708 8 HOH HOH . 
E 5 HOH A 9 709 9 HOH HOH . 
E 5 HOH A 10 710 12 HOH HOH . 
E 5 HOH A 11 711 13 HOH HOH . 
E 5 HOH A 12 712 14 HOH HOH . 
E 5 HOH A 13 713 15 HOH HOH . 
E 5 HOH A 14 714 16 HOH HOH . 
E 5 HOH A 15 715 17 HOH HOH . 
E 5 HOH A 16 716 18 HOH HOH . 
E 5 HOH A 17 717 19 HOH HOH . 
E 5 HOH A 18 718 20 HOH HOH . 
E 5 HOH A 19 719 21 HOH HOH . 
E 5 HOH A 20 720 22 HOH HOH . 
E 5 HOH A 21 721 23 HOH HOH . 
E 5 HOH A 22 722 24 HOH HOH . 
E 5 HOH A 23 723 25 HOH HOH . 
E 5 HOH A 24 724 26 HOH HOH . 
E 5 HOH A 25 725 27 HOH HOH . 
E 5 HOH A 26 726 28 HOH HOH . 
E 5 HOH A 27 727 29 HOH HOH . 
E 5 HOH A 28 728 30 HOH HOH . 
E 5 HOH A 29 729 31 HOH HOH . 
E 5 HOH A 30 730 32 HOH HOH . 
E 5 HOH A 31 731 33 HOH HOH . 
E 5 HOH A 32 732 34 HOH HOH . 
E 5 HOH A 33 733 35 HOH HOH . 
E 5 HOH A 34 734 36 HOH HOH . 
E 5 HOH A 35 735 37 HOH HOH . 
E 5 HOH A 36 736 38 HOH HOH . 
E 5 HOH A 37 737 39 HOH HOH . 
E 5 HOH A 38 738 40 HOH HOH . 
E 5 HOH A 39 739 41 HOH HOH . 
E 5 HOH A 40 740 42 HOH HOH . 
E 5 HOH A 41 741 43 HOH HOH . 
E 5 HOH A 42 742 44 HOH HOH . 
E 5 HOH A 43 743 45 HOH HOH . 
E 5 HOH A 44 744 46 HOH HOH . 
E 5 HOH A 45 745 47 HOH HOH . 
E 5 HOH A 46 746 48 HOH HOH . 
E 5 HOH A 47 747 49 HOH HOH . 
E 5 HOH A 48 748 50 HOH HOH . 
E 5 HOH A 49 749 51 HOH HOH . 
E 5 HOH A 50 750 52 HOH HOH . 
E 5 HOH A 51 751 53 HOH HOH . 
E 5 HOH A 52 752 54 HOH HOH . 
E 5 HOH A 53 753 55 HOH HOH . 
E 5 HOH A 54 754 56 HOH HOH . 
E 5 HOH A 55 755 57 HOH HOH . 
E 5 HOH A 56 756 59 HOH HOH . 
E 5 HOH A 57 757 60 HOH HOH . 
E 5 HOH A 58 758 61 HOH HOH . 
E 5 HOH A 59 759 62 HOH HOH . 
E 5 HOH A 60 760 63 HOH HOH . 
E 5 HOH A 61 761 64 HOH HOH . 
E 5 HOH A 62 762 65 HOH HOH . 
E 5 HOH A 63 763 66 HOH HOH . 
E 5 HOH A 64 764 67 HOH HOH . 
E 5 HOH A 65 765 68 HOH HOH . 
E 5 HOH A 66 766 69 HOH HOH . 
E 5 HOH A 67 767 70 HOH HOH . 
E 5 HOH A 68 768 71 HOH HOH . 
E 5 HOH A 69 769 72 HOH HOH . 
E 5 HOH A 70 770 73 HOH HOH . 
E 5 HOH A 71 771 74 HOH HOH . 
E 5 HOH A 72 772 75 HOH HOH . 
E 5 HOH A 73 773 76 HOH HOH . 
E 5 HOH A 74 774 77 HOH HOH . 
E 5 HOH A 75 775 78 HOH HOH . 
E 5 HOH A 76 776 79 HOH HOH . 
E 5 HOH A 77 777 80 HOH HOH . 
E 5 HOH A 78 778 81 HOH HOH . 
E 5 HOH A 79 779 82 HOH HOH . 
E 5 HOH A 80 780 83 HOH HOH . 
E 5 HOH A 81 781 84 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C22 AUB . . . D 4 -16.667 -9.311 73.441 1 57.33 ? C22 AUB 603 A 1 
HETATM 2 C C24 AUB . . . D 4 -15.834 -11.526 73.856 1 58.41 ? C24 AUB 603 A 1 
HETATM 3 C C21 AUB . . . D 4 -16.902 -9.639 72.125 1 55.8 ? C21 AUB 603 A 1 
HETATM 4 C C25 AUB . . . D 4 -16.081 -11.84 72.54 1 57.88 ? C25 AUB 603 A 1 
HETATM 5 C C23 AUB . . . D 4 -16.136 -10.255 74.287 1 60.54 ? C23 AUB 603 A 1 
HETATM 6 C C20 AUB . . . D 4 -16.612 -10.907 71.678 1 53.64 ? C20 AUB 603 A 1 
HETATM 7 C C28 AUB . . . D 4 -15.907 -9.875 75.679 1 63.08 ? C28 AUB 603 A 1 
HETATM 8 C C26 AUB . . . D 4 -17.264 -8.095 64.659 1 49.59 ? C26 AUB 603 A 1 
HETATM 9 C C14 AUB . . . D 4 -18.377 -10.234 67.155 1 50.53 ? C14 AUB 603 A 1 
HETATM 10 C C12 AUB . . . D 4 -16.645 -8.575 67.911 1 50.76 ? C12 AUB 603 A 1 
HETATM 11 C C15 AUB . . . D 4 -18.076 -11.065 68.386 1 49.12 ? C15 AUB 603 A 1 
HETATM 12 C C17 AUB . . . D 4 -16.168 -9.573 68.928 1 49.93 ? C17 AUB 603 A 1 
HETATM 13 C C6 AUB . . . D 4 -17.346 -5.535 60.004 1 50.12 ? C6 AUB 603 A 1 
HETATM 14 C C9 AUB . . . D 4 -15.161 -6.53 60.602 1 51.43 ? C9 AUB 603 A 1 
HETATM 15 C C4 AUB . . . D 4 -15.721 -4.254 61.389 1 49.1 ? C4 AUB 603 A 1 
HETATM 16 C C2 AUB . . . D 4 -17.285 -7.425 61.606 1 52.05 ? C2 AUB 603 A 1 
HETATM 17 C C10 AUB . . . D 4 -17.859 -5.171 62.402 1 48.73 ? C10 AUB 603 A 1 
HETATM 18 C C8 AUB . . . D 4 -15.655 -6.151 62.998 1 52.1 ? C8 AUB 603 A 1 
HETATM 19 C C1 AUB . . . D 4 -16.637 -6.837 60.348 1 51.91 ? C1 AUB 603 A 1 
HETATM 20 C C5 AUB . . . D 4 -17.201 -4.566 61.162 1 49.76 ? C5 AUB 603 A 1 
HETATM 21 C C3 AUB . . . D 4 -15.007 -5.546 61.753 1 51.62 ? C3 AUB 603 A 1 
HETATM 22 C C13 AUB . . . D 4 -17.264 -9.295 66.73 1 48.85 ? C13 AUB 603 A 1 
HETATM 23 C C16 AUB . . . D 4 -17.342 -10.325 69.502 1 51.15 ? C16 AUB 603 A 1 
HETATM 24 C C7 AUB . . . D 4 -17.144 -6.456 62.777 1 51.34 ? C7 AUB 603 A 1 
HETATM 25 N N18 AUB . . . D 4 -17.825 -8.286 65.879 1 47.71 ? N18 AUB 603 A 1 
HETATM 26 N N11 AUB . . . D 4 -17.75 -6.993 63.98 1 51.81 ? N11 AUB 603 A 1 
HETATM 27 O O29 AUB . . . D 4 -16.441 -8.912 76.21 1 60.55 ? O29 AUB 603 A 1 
HETATM 28 O O27 AUB . . . D 4 -16.416 -8.864 64.25 1 51.83 ? O27 AUB 603 A 1 
HETATM 29 O O30 AUB . . . D 4 -15.067 -10.781 76.238 1 65.54 ? O30 AUB 603 A 1 
HETATM 30 O O19 AUB . . . D 4 -16.812 -11.322 70.373 1 49.97 ? O19 AUB 603 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           30 
#