data_3WKT
#
_model_server_result.job_id            r8BBL7Gm9SPqgGt2uVIn6w 
_model_server_result.datetime_utc      '2025-03-04 13:00:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3wkt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":300}' 
#
_entry.id    3WKT 
#
_exptl.entry_id    3WKT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3WKT 
_cell.length_a            290.336 
_cell.length_b            290.336 
_cell.length_c            83.646 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3WKT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,K 1 1 
B,D,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 K N N 
? 6 L N N 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 274 n n 
CHA C4D HEM doub 275 n n 
CHA HHA HEM sing 276 n n 
CHB C4A HEM sing 277 n n 
CHB C1B HEM doub 278 n n 
CHB HHB HEM sing 279 n n 
CHC C4B HEM sing 280 n n 
CHC C1C HEM doub 281 n n 
CHC HHC HEM sing 282 n n 
CHD C4C HEM doub 283 n n 
CHD C1D HEM sing 284 n n 
CHD HHD HEM sing 285 n n 
C1A C2A HEM doub 286 n y 
C1A NA HEM sing 287 n y 
C2A C3A HEM sing 288 n y 
C2A CAA HEM sing 289 n n 
C3A C4A HEM doub 290 n y 
C3A CMA HEM sing 291 n n 
C4A NA HEM sing 292 n y 
CMA HMA HEM sing 293 n n 
CMA HMAA HEM sing 294 n n 
CMA HMAB HEM sing 295 n n 
CAA CBA HEM sing 296 n n 
CAA HAA HEM sing 297 n n 
CAA HAAA HEM sing 298 n n 
CBA CGA HEM sing 299 n n 
CBA HBA HEM sing 300 n n 
CBA HBAA HEM sing 301 n n 
CGA O1A HEM doub 302 n n 
CGA O2A HEM sing 303 n n 
C1B C2B HEM sing 304 n n 
C1B NB HEM sing 305 n n 
C2B C3B HEM doub 306 n n 
C2B CMB HEM sing 307 n n 
C3B C4B HEM sing 308 n n 
C3B CAB HEM sing 309 n n 
C4B NB HEM doub 310 n n 
CMB HMB HEM sing 311 n n 
CMB HMBA HEM sing 312 n n 
CMB HMBB HEM sing 313 n n 
CAB CBB HEM doub 314 n n 
CAB HAB HEM sing 315 n n 
CBB HBB HEM sing 316 n n 
CBB HBBA HEM sing 317 n n 
C1C C2C HEM sing 318 n y 
C1C NC HEM sing 319 n y 
C2C C3C HEM doub 320 n y 
C2C CMC HEM sing 321 n n 
C3C C4C HEM sing 322 n y 
C3C CAC HEM sing 323 n n 
C4C NC HEM sing 324 n y 
CMC HMC HEM sing 325 n n 
CMC HMCA HEM sing 326 n n 
CMC HMCB HEM sing 327 n n 
CAC CBC HEM doub 328 n n 
CAC HAC HEM sing 329 n n 
CBC HBC HEM sing 330 n n 
CBC HBCA HEM sing 331 n n 
C1D C2D HEM sing 332 n n 
C1D ND HEM doub 333 n n 
C2D C3D HEM doub 334 n n 
C2D CMD HEM sing 335 n n 
C3D C4D HEM sing 336 n n 
C3D CAD HEM sing 337 n n 
C4D ND HEM sing 338 n n 
CMD HMD HEM sing 339 n n 
CMD HMDA HEM sing 340 n n 
CMD HMDB HEM sing 341 n n 
CAD CBD HEM sing 342 n n 
CAD HAD HEM sing 343 n n 
CAD HADA HEM sing 344 n n 
CBD CGD HEM sing 345 n n 
CBD HBD HEM sing 346 n n 
CBD HBDA HEM sing 347 n n 
CGD O1D HEM doub 348 n n 
CGD O2D HEM sing 349 n n 
O2A H2A HEM sing 350 n n 
O2D H2D HEM sing 351 n n 
FE NA HEM sing 352 n n 
FE NB HEM sing 353 n n 
FE NC HEM sing 354 n n 
FE ND HEM sing 355 n n 
#
_atom_sites.entry_id                     3WKT 
_atom_sites.fract_transf_matrix[1][1]    0.003444 
_atom_sites.fract_transf_matrix[1][2]    0.001989 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003977 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011955 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 FAD A 1 701 750 FAD FAD . 
F 4 FMN A 1 702 751 FMN FMN . 
G 5 NAP A 1 703 752 NAP NDP . 
H 3 FAD B 1 701 750 FAD FAD . 
I 4 FMN B 1 702 751 FMN FMN . 
J 5 NAP B 1 703 752 NAP NAP . 
K 6 HEM C 1 300 300 HEM HEM . 
L 6 HEM D 1 300 300 HEM HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . K 6 108.833 53.127 -21.942 1 261.23 ? CHA HEM 300 C 1 
HETATM 2 C CHB HEM . . . K 6 110.538 55.866 -25.544 1 347.83 ? CHB HEM 300 C 1 
HETATM 3 C CHC HEM . . . K 6 107.29 53.767 -28.544 1 214.7 ? CHC HEM 300 C 1 
HETATM 4 C CHD HEM . . . K 6 106.221 50.491 -25.102 1 204.51 ? CHD HEM 300 C 1 
HETATM 5 C C1A HEM . . . K 6 109.567 54.045 -22.655 1 283.48 ? C1A HEM 300 C 1 
HETATM 6 C C2A HEM . . . K 6 110.55 54.919 -22.109 1 294.07 ? C2A HEM 300 C 1 
HETATM 7 C C3A HEM . . . K 6 111.034 55.696 -23.118 1 303.93 ? C3A HEM 300 C 1 
HETATM 8 C C4A HEM . . . K 6 110.35 55.293 -24.296 1 334.87 ? C4A HEM 300 C 1 
HETATM 9 C CMA HEM . . . K 6 112.108 56.766 -23.007 1 258.28 ? CMA HEM 300 C 1 
HETATM 10 C CAA HEM . . . K 6 110.982 54.987 -20.664 1 280.61 ? CAA HEM 300 C 1 
HETATM 11 C CBA HEM . . . K 6 109.925 55.782 -19.878 1 277.71 ? CBA HEM 300 C 1 
HETATM 12 C CGA HEM . . . K 6 110.516 56.336 -18.611 1 265.24 ? CGA HEM 300 C 1 
HETATM 13 O O1A HEM . . . K 6 111.464 57.144 -18.704 1 275.25 ? O1A HEM 300 C 1 
HETATM 14 O O2A HEM . . . K 6 110.066 55.998 -17.486 1 249 ? O2A HEM 300 C 1 
HETATM 15 C C1B HEM . . . K 6 109.752 55.569 -26.671 1 329.04 ? C1B HEM 300 C 1 
HETATM 16 C C2B HEM . . . K 6 109.87 56.284 -27.898 1 316.84 ? C2B HEM 300 C 1 
HETATM 17 C C3B HEM . . . K 6 108.971 55.709 -28.766 1 304.49 ? C3B HEM 300 C 1 
HETATM 18 C C4B HEM . . . K 6 108.279 54.617 -28.023 1 279.02 ? C4B HEM 300 C 1 
HETATM 19 C CMB HEM . . . K 6 110.818 57.433 -28.183 1 261.29 ? CMB HEM 300 C 1 
HETATM 20 C CAB HEM . . . K 6 108.729 56.102 -30.162 1 303.34 ? CAB HEM 300 C 1 
HETATM 21 C CBB HEM . . . K 6 107.634 56.8 -30.448 1 297.56 ? CBB HEM 300 C 1 
HETATM 22 C C1C HEM . . . K 6 106.809 52.609 -27.909 1 201.85 ? C1C HEM 300 C 1 
HETATM 23 C C2C HEM . . . K 6 106.114 51.551 -28.517 1 207.56 ? C2C HEM 300 C 1 
HETATM 24 C C3C HEM . . . K 6 105.796 50.623 -27.536 1 206.93 ? C3C HEM 300 C 1 
HETATM 25 C C4C HEM . . . K 6 106.325 51.116 -26.316 1 207.81 ? C4C HEM 300 C 1 
HETATM 26 C CMC HEM . . . K 6 105.773 51.434 -29.98 1 236.86 ? CMC HEM 300 C 1 
HETATM 27 C CAC HEM . . . K 6 105.07 49.344 -27.718 1 208.21 ? CAC HEM 300 C 1 
HETATM 28 C CBC HEM . . . K 6 103.827 49.319 -28.199 1 179.73 ? CBC HEM 300 C 1 
HETATM 29 C C1D HEM . . . K 6 106.854 51.025 -23.978 1 208.27 ? C1D HEM 300 C 1 
HETATM 30 C C2D HEM . . . K 6 106.65 50.383 -22.668 1 217 ? C2D HEM 300 C 1 
HETATM 31 C C3D HEM . . . K 6 107.375 51.104 -21.779 1 247.35 ? C3D HEM 300 C 1 
HETATM 32 C C4D HEM . . . K 6 108.004 52.194 -22.562 1 251.15 ? C4D HEM 300 C 1 
HETATM 33 C CMD HEM . . . K 6 105.812 49.155 -22.402 1 198.79 ? CMD HEM 300 C 1 
HETATM 34 C CAD HEM . . . K 6 107.525 50.856 -20.282 1 247.75 ? CAD HEM 300 C 1 
HETATM 35 C CBD HEM . . . K 6 108.972 50.445 -19.939 1 258.64 ? CBD HEM 300 C 1 
HETATM 36 C CGD HEM . . . K 6 109.34 50.513 -18.461 1 241.14 ? CGD HEM 300 C 1 
HETATM 37 O O1D HEM . . . K 6 108.653 49.883 -17.608 1 235.53 ? O1D HEM 300 C 1 
HETATM 38 O O2D HEM . . . K 6 110.347 51.194 -18.096 1 203.89 ? O2D HEM 300 C 1 
HETATM 39 N NA HEM . . . K 6 109.433 54.295 -24.004 1 303.81 ? NA HEM 300 C 1 
HETATM 40 N NB HEM . . . K 6 108.806 54.611 -26.782 1 302.05 ? NB HEM 300 C 1 
HETATM 41 N NC HEM . . . K 6 106.94 52.313 -26.582 1 220.68 ? NC HEM 300 C 1 
HETATM 42 N ND HEM . . . K 6 107.677 52.101 -23.87 1 220.13 ? ND HEM 300 C 1 
HETATM 43 FE FE HEM . . . K 6 108.236 53.263 -25.249 1 267.45 ? FE HEM 300 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           43 
#