data_3WKT
#
_model_server_result.job_id            KlAFoovQkAwXhFHRw_f85g 
_model_server_result.datetime_utc      '2025-03-04 13:15:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3wkt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":300}' 
#
_entry.id    3WKT 
#
_exptl.entry_id    3WKT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3WKT 
_cell.length_a            290.336 
_cell.length_b            290.336 
_cell.length_c            83.646 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3WKT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,K 1 1 
B,D,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 K N N 
? 6 L N N 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 274 n n 
CHA C4D HEM doub 275 n n 
CHA HHA HEM sing 276 n n 
CHB C4A HEM sing 277 n n 
CHB C1B HEM doub 278 n n 
CHB HHB HEM sing 279 n n 
CHC C4B HEM sing 280 n n 
CHC C1C HEM doub 281 n n 
CHC HHC HEM sing 282 n n 
CHD C4C HEM doub 283 n n 
CHD C1D HEM sing 284 n n 
CHD HHD HEM sing 285 n n 
C1A C2A HEM doub 286 n y 
C1A NA HEM sing 287 n y 
C2A C3A HEM sing 288 n y 
C2A CAA HEM sing 289 n n 
C3A C4A HEM doub 290 n y 
C3A CMA HEM sing 291 n n 
C4A NA HEM sing 292 n y 
CMA HMA HEM sing 293 n n 
CMA HMAA HEM sing 294 n n 
CMA HMAB HEM sing 295 n n 
CAA CBA HEM sing 296 n n 
CAA HAA HEM sing 297 n n 
CAA HAAA HEM sing 298 n n 
CBA CGA HEM sing 299 n n 
CBA HBA HEM sing 300 n n 
CBA HBAA HEM sing 301 n n 
CGA O1A HEM doub 302 n n 
CGA O2A HEM sing 303 n n 
C1B C2B HEM sing 304 n n 
C1B NB HEM sing 305 n n 
C2B C3B HEM doub 306 n n 
C2B CMB HEM sing 307 n n 
C3B C4B HEM sing 308 n n 
C3B CAB HEM sing 309 n n 
C4B NB HEM doub 310 n n 
CMB HMB HEM sing 311 n n 
CMB HMBA HEM sing 312 n n 
CMB HMBB HEM sing 313 n n 
CAB CBB HEM doub 314 n n 
CAB HAB HEM sing 315 n n 
CBB HBB HEM sing 316 n n 
CBB HBBA HEM sing 317 n n 
C1C C2C HEM sing 318 n y 
C1C NC HEM sing 319 n y 
C2C C3C HEM doub 320 n y 
C2C CMC HEM sing 321 n n 
C3C C4C HEM sing 322 n y 
C3C CAC HEM sing 323 n n 
C4C NC HEM sing 324 n y 
CMC HMC HEM sing 325 n n 
CMC HMCA HEM sing 326 n n 
CMC HMCB HEM sing 327 n n 
CAC CBC HEM doub 328 n n 
CAC HAC HEM sing 329 n n 
CBC HBC HEM sing 330 n n 
CBC HBCA HEM sing 331 n n 
C1D C2D HEM sing 332 n n 
C1D ND HEM doub 333 n n 
C2D C3D HEM doub 334 n n 
C2D CMD HEM sing 335 n n 
C3D C4D HEM sing 336 n n 
C3D CAD HEM sing 337 n n 
C4D ND HEM sing 338 n n 
CMD HMD HEM sing 339 n n 
CMD HMDA HEM sing 340 n n 
CMD HMDB HEM sing 341 n n 
CAD CBD HEM sing 342 n n 
CAD HAD HEM sing 343 n n 
CAD HADA HEM sing 344 n n 
CBD CGD HEM sing 345 n n 
CBD HBD HEM sing 346 n n 
CBD HBDA HEM sing 347 n n 
CGD O1D HEM doub 348 n n 
CGD O2D HEM sing 349 n n 
O2A H2A HEM sing 350 n n 
O2D H2D HEM sing 351 n n 
FE NA HEM sing 352 n n 
FE NB HEM sing 353 n n 
FE NC HEM sing 354 n n 
FE ND HEM sing 355 n n 
#
_atom_sites.entry_id                     3WKT 
_atom_sites.fract_transf_matrix[1][1]    0.003444 
_atom_sites.fract_transf_matrix[1][2]    0.001989 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003977 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011955 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 FAD A 1 701 750 FAD FAD . 
F 4 FMN A 1 702 751 FMN FMN . 
G 5 NAP A 1 703 752 NAP NDP . 
H 3 FAD B 1 701 750 FAD FAD . 
I 4 FMN B 1 702 751 FMN FMN . 
J 5 NAP B 1 703 752 NAP NAP . 
K 6 HEM C 1 300 300 HEM HEM . 
L 6 HEM D 1 300 300 HEM HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . L 6 86.342 139.759 36.695 1 238.34 ? CHA HEM 300 D 1 
HETATM 2 C CHB HEM . . . L 6 90.09 141.269 34.005 1 282.5 ? CHB HEM 300 D 1 
HETATM 3 C CHC HEM . . . L 6 90.783 144.749 37.389 1 262.85 ? CHC HEM 300 D 1 
HETATM 4 C CHD HEM . . . L 6 88.618 141.772 40.524 1 214.37 ? CHD HEM 300 D 1 
HETATM 5 C C1A HEM . . . L 6 87.195 139.932 35.628 1 244.96 ? C1A HEM 300 D 1 
HETATM 6 C C2A HEM . . . L 6 87.09 139.276 34.378 1 251.39 ? C2A HEM 300 D 1 
HETATM 7 C C3A HEM . . . L 6 88.145 139.679 33.605 1 260.63 ? C3A HEM 300 D 1 
HETATM 8 C C4A HEM . . . L 6 88.911 140.607 34.381 1 278.37 ? C4A HEM 300 D 1 
HETATM 9 C CMA HEM . . . L 6 88.422 139.214 32.188 1 223.97 ? CMA HEM 300 D 1 
HETATM 10 C CAA HEM . . . L 6 86.011 138.294 33.984 1 260.36 ? CAA HEM 300 D 1 
HETATM 11 C CBA HEM . . . L 6 86.374 136.93 34.592 1 300.59 ? CBA HEM 300 D 1 
HETATM 12 C CGA HEM . . . L 6 85.701 135.774 33.882 1 336.14 ? CGA HEM 300 D 1 
HETATM 13 O O1A HEM . . . L 6 84.531 135.43 34.155 1 269.36 ? O1A HEM 300 D 1 
HETATM 14 O O2A HEM . . . L 6 86.325 135.124 33.012 1 365.17 ? O2A HEM 300 D 1 
HETATM 15 C C1B HEM . . . L 6 90.585 142.435 34.645 1 255.91 ? C1B HEM 300 D 1 
HETATM 16 C C2B HEM . . . L 6 91.516 143.377 34.088 1 260.58 ? C2B HEM 300 D 1 
HETATM 17 C C3B HEM . . . L 6 91.717 144.365 35.024 1 256.6 ? C3B HEM 300 D 1 
HETATM 18 C C4B HEM . . . L 6 90.878 143.998 36.193 1 250.86 ? C4B HEM 300 D 1 
HETATM 19 C CMB HEM . . . L 6 92.175 143.334 32.724 1 289.45 ? CMB HEM 300 D 1 
HETATM 20 C CAB HEM . . . L 6 92.587 145.56 34.897 1 254.57 ? CAB HEM 300 D 1 
HETATM 21 C CBB HEM . . . L 6 93.869 145.51 35.247 1 263.67 ? CBB HEM 300 D 1 
HETATM 22 C C1C HEM . . . L 6 90.342 144.227 38.615 1 241.65 ? C1C HEM 300 D 1 
HETATM 23 C C2C HEM . . . L 6 90.621 144.71 39.927 1 217.85 ? C2C HEM 300 D 1 
HETATM 24 C C3C HEM . . . L 6 90.007 143.833 40.83 1 211.01 ? C3C HEM 300 D 1 
HETATM 25 C C4C HEM . . . L 6 89.349 142.826 40.048 1 231.73 ? C4C HEM 300 D 1 
HETATM 26 C CMC HEM . . . L 6 91.416 145.95 40.294 1 165.03 ? CMC HEM 300 D 1 
HETATM 27 C CAC HEM . . . L 6 90.01 143.951 42.296 1 179.5 ? CAC HEM 300 D 1 
HETATM 28 C CBC HEM . . . L 6 91.137 144.242 42.944 1 186.4 ? CBC HEM 300 D 1 
HETATM 29 C C1D HEM . . . L 6 87.759 141.049 39.667 1 211.61 ? C1D HEM 300 D 1 
HETATM 30 C C2D HEM . . . L 6 86.693 140.204 40.224 1 199.6 ? C2D HEM 300 D 1 
HETATM 31 C C3D HEM . . . L 6 86.036 139.634 39.211 1 187.93 ? C3D HEM 300 D 1 
HETATM 32 C C4D HEM . . . L 6 86.726 140.124 37.985 1 211.36 ? C4D HEM 300 D 1 
HETATM 33 C CMD HEM . . . L 6 86.379 140.021 41.676 1 220.16 ? CMD HEM 300 D 1 
HETATM 34 C CAD HEM . . . L 6 84.897 138.657 39.444 1 180.7 ? CAD HEM 300 D 1 
HETATM 35 C CBD HEM . . . L 6 83.52 138.827 38.791 1 210.93 ? CBD HEM 300 D 1 
HETATM 36 C CGD HEM . . . L 6 82.884 137.439 38.696 1 211.62 ? CGD HEM 300 D 1 
HETATM 37 O O1D HEM . . . L 6 81.99 137.025 39.481 1 168.72 ? O1D HEM 300 D 1 
HETATM 38 O O2D HEM . . . L 6 83.25 136.658 37.785 1 220.84 ? O2D HEM 300 D 1 
HETATM 39 N NA HEM . . . L 6 88.325 140.715 35.621 1 254.46 ? NA HEM 300 D 1 
HETATM 40 N NB HEM . . . L 6 90.251 142.857 35.864 1 244.42 ? NB HEM 300 D 1 
HETATM 41 N NC HEM . . . L 6 89.599 143.081 38.717 1 247.53 ? NC HEM 300 D 1 
HETATM 42 N ND HEM . . . L 6 87.731 140.971 38.316 1 226.29 ? ND HEM 300 D 1 
HETATM 43 FE FE HEM . . . L 6 88.94 141.835 37.154 1 241.01 ? FE HEM 300 D 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#