data_3WKT
#
_model_server_result.job_id            ONxO_XGV5VAltbSOD6sZ2A 
_model_server_result.datetime_utc      '2025-03-04 13:23:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3wkt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":703}' 
#
_entry.id    3WKT 
#
_exptl.entry_id    3WKT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3WKT 
_cell.length_a            290.336 
_cell.length_b            290.336 
_cell.length_c            83.646 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3WKT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,K 1 1 
B,D,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 J N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 462 n n 
PA O2A NAP sing 463 n n 
PA O5B NAP sing 464 n n 
PA O3 NAP sing 465 n n 
O2A HOA2 NAP sing 466 n n 
O5B C5B NAP sing 467 n n 
C5B C4B NAP sing 468 n n 
C5B H51A NAP sing 469 n n 
C5B H52A NAP sing 470 n n 
C4B O4B NAP sing 471 n n 
C4B C3B NAP sing 472 n n 
C4B H4B NAP sing 473 n n 
O4B C1B NAP sing 474 n n 
C3B O3B NAP sing 475 n n 
C3B C2B NAP sing 476 n n 
C3B H3B NAP sing 477 n n 
O3B HO3A NAP sing 478 n n 
C2B O2B NAP sing 479 n n 
C2B C1B NAP sing 480 n n 
C2B H2B NAP sing 481 n n 
O2B P2B NAP sing 482 n n 
C1B N9A NAP sing 483 n n 
C1B H1B NAP sing 484 n n 
N9A C8A NAP sing 485 n y 
N9A C4A NAP sing 486 n y 
C8A N7A NAP doub 487 n y 
C8A H8A NAP sing 488 n n 
N7A C5A NAP sing 489 n y 
C5A C6A NAP sing 490 n y 
C5A C4A NAP doub 491 n y 
C6A N6A NAP sing 492 n n 
C6A N1A NAP doub 493 n y 
N6A H61A NAP sing 494 n n 
N6A H62A NAP sing 495 n n 
N1A C2A NAP sing 496 n y 
C2A N3A NAP doub 497 n y 
C2A H2A NAP sing 498 n n 
N3A C4A NAP sing 499 n y 
O3 PN NAP sing 500 n n 
PN O1N NAP doub 501 n n 
PN O2N NAP sing 502 n n 
PN O5D NAP sing 503 n n 
O5D C5D NAP sing 504 n n 
C5D C4D NAP sing 505 n n 
C5D H51N NAP sing 506 n n 
C5D H52N NAP sing 507 n n 
C4D O4D NAP sing 508 n n 
C4D C3D NAP sing 509 n n 
C4D H4D NAP sing 510 n n 
O4D C1D NAP sing 511 n n 
C3D O3D NAP sing 512 n n 
C3D C2D NAP sing 513 n n 
C3D H3D NAP sing 514 n n 
O3D HO3N NAP sing 515 n n 
C2D O2D NAP sing 516 n n 
C2D C1D NAP sing 517 n n 
C2D H2D NAP sing 518 n n 
O2D HO2N NAP sing 519 n n 
C1D N1N NAP sing 520 n n 
C1D H1D NAP sing 521 n n 
N1N C2N NAP sing 522 n y 
N1N C6N NAP doub 523 n y 
C2N C3N NAP doub 524 n y 
C2N H2N NAP sing 525 n n 
C3N C7N NAP sing 526 n n 
C3N C4N NAP sing 527 n y 
C7N O7N NAP doub 528 n n 
C7N N7N NAP sing 529 n n 
N7N H71N NAP sing 530 n n 
N7N H72N NAP sing 531 n n 
C4N C5N NAP doub 532 n y 
C4N H4N NAP sing 533 n n 
C5N C6N NAP sing 534 n y 
C5N H5N NAP sing 535 n n 
C6N H6N NAP sing 536 n n 
P2B O1X NAP doub 537 n n 
P2B O2X NAP sing 538 n n 
P2B O3X NAP sing 539 n n 
O2X HOP2 NAP sing 540 n n 
O3X HOP3 NAP sing 541 n n 
#
_atom_sites.entry_id                     3WKT 
_atom_sites.fract_transf_matrix[1][1]    0.003444 
_atom_sites.fract_transf_matrix[1][2]    0.001989 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003977 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011955 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 FAD A 1 701 750 FAD FAD . 
F 4 FMN A 1 702 751 FMN FMN . 
G 5 NAP A 1 703 752 NAP NDP . 
H 3 FAD B 1 701 750 FAD FAD . 
I 4 FMN B 1 702 751 FMN FMN . 
J 5 NAP B 1 703 752 NAP NAP . 
K 6 HEM C 1 300 300 HEM HEM . 
L 6 HEM D 1 300 300 HEM HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . G 5 105.847 73.361 10.683 1 217.5 ? PA NAP 703 A 1 
HETATM 2 O O1A NAP . . . G 5 106.29 74.45 9.746 1 195.45 ? O1A NAP 703 A 1 
HETATM 3 O O2A NAP . . . G 5 105.633 73.73 12.124 1 212.84 ? O2A NAP 703 A 1 
HETATM 4 O O5B NAP . . . G 5 106.895 72.127 10.55 1 232.1 ? O5B NAP 703 A 1 
HETATM 5 C C5B NAP . . . G 5 106.579 70.755 10.9 1 228.33 ? C5B NAP 703 A 1 
HETATM 6 C C4B NAP . . . G 5 107.691 70.071 11.71 1 227.96 ? C4B NAP 703 A 1 
HETATM 7 O O4B NAP . . . G 5 108.814 69.79 10.873 1 198.67 ? O4B NAP 703 A 1 
HETATM 8 C C3B NAP . . . G 5 108.198 70.921 12.883 1 223.19 ? C3B NAP 703 A 1 
HETATM 9 O O3B NAP . . . G 5 108.652 70.07 13.95 1 168.08 ? O3B NAP 703 A 1 
HETATM 10 C C2B NAP . . . G 5 109.363 71.686 12.296 1 226.27 ? C2B NAP 703 A 1 
HETATM 11 O O2B NAP . . . G 5 110.327 72.168 13.242 1 200.11 ? O2B NAP 703 A 1 
HETATM 12 C C1B NAP . . . G 5 109.892 70.576 11.404 1 241.13 ? C1B NAP 703 A 1 
HETATM 13 N N9A NAP . . . G 5 110.767 71.066 10.331 1 266.83 ? N9A NAP 703 A 1 
HETATM 14 C C8A NAP . . . G 5 111.045 72.297 9.856 1 288.92 ? C8A NAP 703 A 1 
HETATM 15 N N7A NAP . . . G 5 111.975 72.21 8.856 1 280.48 ? N7A NAP 703 A 1 
HETATM 16 C C5A NAP . . . G 5 112.285 70.899 8.707 1 269.81 ? C5A NAP 703 A 1 
HETATM 17 C C6A NAP . . . G 5 113.163 70.045 7.857 1 251.44 ? C6A NAP 703 A 1 
HETATM 18 N N6A NAP . . . G 5 113.974 70.54 6.885 1 249.77 ? N6A NAP 703 A 1 
HETATM 19 N N1A NAP . . . G 5 113.129 68.711 8.098 1 216.35 ? N1A NAP 703 A 1 
HETATM 20 C C2A NAP . . . G 5 112.332 68.147 9.037 1 215.53 ? C2A NAP 703 A 1 
HETATM 21 N N3A NAP . . . G 5 111.512 68.833 9.828 1 211.72 ? N3A NAP 703 A 1 
HETATM 22 C C4A NAP . . . G 5 111.468 70.173 9.694 1 251.94 ? C4A NAP 703 A 1 
HETATM 23 O O3 NAP . . . G 5 104.464 72.697 10.196 1 209.15 ? O3 NAP 703 A 1 
HETATM 24 P PN NAP . . . G 5 103.861 72.699 8.685 1 227.99 ? PN NAP 703 A 1 
HETATM 25 O O1N NAP . . . G 5 104.772 71.638 7.901 1 285.97 ? O1N NAP 703 A 1 
HETATM 26 O O2N NAP . . . G 5 102.488 72.061 8.741 1 154.41 ? O2N NAP 703 A 1 
HETATM 27 O O5D NAP . . . G 5 104.147 74.04 8.008 1 224.47 ? O5D NAP 703 A 1 
HETATM 28 P P2B NAP . . . G 5 110.738 73.733 13.371 1 206.1 ? P2B NAP 703 A 1 
HETATM 29 O O1X NAP . . . G 5 112.035 73.956 12.639 1 182.03 ? O1X NAP 703 A 1 
HETATM 30 O O2X NAP . . . G 5 110.842 74.002 14.853 1 230.7 ? O2X NAP 703 A 1 
HETATM 31 O O3X NAP . . . G 5 109.573 74.453 12.746 1 241.96 ? O3X NAP 703 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           31 
#