data_3WKT
#
_model_server_result.job_id            7d3EA5WlkQSnxXsWf-79VA 
_model_server_result.datetime_utc      '2025-03-04 13:30:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3wkt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":703}' 
#
_entry.id    3WKT 
#
_exptl.entry_id    3WKT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3WKT 
_cell.length_a            290.336 
_cell.length_b            290.336 
_cell.length_c            83.646 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3WKT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,K 1 1 
B,D,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 J N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 462 n n 
PA O2A NAP sing 463 n n 
PA O5B NAP sing 464 n n 
PA O3 NAP sing 465 n n 
O2A HOA2 NAP sing 466 n n 
O5B C5B NAP sing 467 n n 
C5B C4B NAP sing 468 n n 
C5B H51A NAP sing 469 n n 
C5B H52A NAP sing 470 n n 
C4B O4B NAP sing 471 n n 
C4B C3B NAP sing 472 n n 
C4B H4B NAP sing 473 n n 
O4B C1B NAP sing 474 n n 
C3B O3B NAP sing 475 n n 
C3B C2B NAP sing 476 n n 
C3B H3B NAP sing 477 n n 
O3B HO3A NAP sing 478 n n 
C2B O2B NAP sing 479 n n 
C2B C1B NAP sing 480 n n 
C2B H2B NAP sing 481 n n 
O2B P2B NAP sing 482 n n 
C1B N9A NAP sing 483 n n 
C1B H1B NAP sing 484 n n 
N9A C8A NAP sing 485 n y 
N9A C4A NAP sing 486 n y 
C8A N7A NAP doub 487 n y 
C8A H8A NAP sing 488 n n 
N7A C5A NAP sing 489 n y 
C5A C6A NAP sing 490 n y 
C5A C4A NAP doub 491 n y 
C6A N6A NAP sing 492 n n 
C6A N1A NAP doub 493 n y 
N6A H61A NAP sing 494 n n 
N6A H62A NAP sing 495 n n 
N1A C2A NAP sing 496 n y 
C2A N3A NAP doub 497 n y 
C2A H2A NAP sing 498 n n 
N3A C4A NAP sing 499 n y 
O3 PN NAP sing 500 n n 
PN O1N NAP doub 501 n n 
PN O2N NAP sing 502 n n 
PN O5D NAP sing 503 n n 
O5D C5D NAP sing 504 n n 
C5D C4D NAP sing 505 n n 
C5D H51N NAP sing 506 n n 
C5D H52N NAP sing 507 n n 
C4D O4D NAP sing 508 n n 
C4D C3D NAP sing 509 n n 
C4D H4D NAP sing 510 n n 
O4D C1D NAP sing 511 n n 
C3D O3D NAP sing 512 n n 
C3D C2D NAP sing 513 n n 
C3D H3D NAP sing 514 n n 
O3D HO3N NAP sing 515 n n 
C2D O2D NAP sing 516 n n 
C2D C1D NAP sing 517 n n 
C2D H2D NAP sing 518 n n 
O2D HO2N NAP sing 519 n n 
C1D N1N NAP sing 520 n n 
C1D H1D NAP sing 521 n n 
N1N C2N NAP sing 522 n y 
N1N C6N NAP doub 523 n y 
C2N C3N NAP doub 524 n y 
C2N H2N NAP sing 525 n n 
C3N C7N NAP sing 526 n n 
C3N C4N NAP sing 527 n y 
C7N O7N NAP doub 528 n n 
C7N N7N NAP sing 529 n n 
N7N H71N NAP sing 530 n n 
N7N H72N NAP sing 531 n n 
C4N C5N NAP doub 532 n y 
C4N H4N NAP sing 533 n n 
C5N C6N NAP sing 534 n y 
C5N H5N NAP sing 535 n n 
C6N H6N NAP sing 536 n n 
P2B O1X NAP doub 537 n n 
P2B O2X NAP sing 538 n n 
P2B O3X NAP sing 539 n n 
O2X HOP2 NAP sing 540 n n 
O3X HOP3 NAP sing 541 n n 
#
_atom_sites.entry_id                     3WKT 
_atom_sites.fract_transf_matrix[1][1]    0.003444 
_atom_sites.fract_transf_matrix[1][2]    0.001989 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003977 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011955 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 FAD A 1 701 750 FAD FAD . 
F 4 FMN A 1 702 751 FMN FMN . 
G 5 NAP A 1 703 752 NAP NDP . 
H 3 FAD B 1 701 750 FAD FAD . 
I 4 FMN B 1 702 751 FMN FMN . 
J 5 NAP B 1 703 752 NAP NAP . 
K 6 HEM C 1 300 300 HEM HEM . 
L 6 HEM D 1 300 300 HEM HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . J 5 81.692 103.634 22.491 1 175.95 ? PA NAP 703 B 1 
HETATM 2 O O1A NAP . . . J 5 82.334 103.981 21.155 1 177.21 ? O1A NAP 703 B 1 
HETATM 3 O O2A NAP . . . J 5 81.329 102.225 22.892 1 208.3 ? O2A NAP 703 B 1 
HETATM 4 O O5B NAP . . . J 5 80.379 104.51 22.534 1 147.09 ? O5B NAP 703 B 1 
HETATM 5 C C5B NAP . . . J 5 79.52 104.392 23.654 1 172.33 ? C5B NAP 703 B 1 
HETATM 6 C C4B NAP . . . J 5 78.037 104.56 23.32 1 176.31 ? C4B NAP 703 B 1 
HETATM 7 O O4B NAP . . . J 5 77.698 105.875 22.889 1 181.06 ? O4B NAP 703 B 1 
HETATM 8 C C3B NAP . . . J 5 77.503 103.638 22.234 1 167.75 ? C3B NAP 703 B 1 
HETATM 9 O O3B NAP . . . J 5 76.147 103.326 22.673 1 142.21 ? O3B NAP 703 B 1 
HETATM 10 C C2B NAP . . . J 5 77.407 104.498 21.004 1 180.4 ? C2B NAP 703 B 1 
HETATM 11 O O2B NAP . . . J 5 76.396 103.992 20.156 1 163.94 ? O2B NAP 703 B 1 
HETATM 12 C C1B NAP . . . J 5 76.925 105.745 21.689 1 204.62 ? C1B NAP 703 B 1 
HETATM 13 N N9A NAP . . . J 5 76.93 107.004 20.929 1 207.13 ? N9A NAP 703 B 1 
HETATM 14 C C8A NAP . . . J 5 77.486 107.475 19.796 1 219.66 ? C8A NAP 703 B 1 
HETATM 15 N N7A NAP . . . J 5 77.113 108.778 19.612 1 181.61 ? N7A NAP 703 B 1 
HETATM 16 C C5A NAP . . . J 5 76.335 109.098 20.654 1 155.01 ? C5A NAP 703 B 1 
HETATM 17 C C6A NAP . . . J 5 75.588 110.241 21.133 1 153.53 ? C6A NAP 703 B 1 
HETATM 18 N N6A NAP . . . J 5 75.612 111.38 20.411 1 178.25 ? N6A NAP 703 B 1 
HETATM 19 N N1A NAP . . . J 5 74.874 110.085 22.278 1 185.44 ? N1A NAP 703 B 1 
HETATM 20 C C2A NAP . . . J 5 74.833 108.96 23.022 1 209.31 ? C2A NAP 703 B 1 
HETATM 21 N N3A NAP . . . J 5 75.495 107.881 22.631 1 194.27 ? N3A NAP 703 B 1 
HETATM 22 C C4A NAP . . . J 5 76.224 107.924 21.495 1 182.33 ? C4A NAP 703 B 1 
HETATM 23 O O3 NAP . . . J 5 82.544 104.126 23.732 1 156.72 ? O3 NAP 703 B 1 
HETATM 24 P PN NAP . . . J 5 83.661 105.277 23.604 1 183.07 ? PN NAP 703 B 1 
HETATM 25 O O1N NAP . . . J 5 84.003 105.699 22.178 1 207.74 ? O1N NAP 703 B 1 
HETATM 26 O O2N NAP . . . J 5 84.668 104.746 24.556 1 169.1 ? O2N NAP 703 B 1 
HETATM 27 O O5D NAP . . . J 5 82.993 106.561 24.302 1 242.39 ? O5D NAP 703 B 1 
HETATM 28 P P2B NAP . . . J 5 76.773 103.558 18.66 1 148.03 ? P2B NAP 703 B 1 
HETATM 29 O O1X NAP . . . J 5 76.226 104.653 17.791 1 175.81 ? O1X NAP 703 B 1 
HETATM 30 O O2X NAP . . . J 5 76.101 102.198 18.525 1 135.37 ? O2X NAP 703 B 1 
HETATM 31 O O3X NAP . . . J 5 78.26 103.56 18.639 1 145.53 ? O3X NAP 703 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#