data_3WL3 # _model_server_result.job_id uHPaMtphNoaG0sRpiTjYvQ _model_server_result.datetime_utc '2024-11-08 09:32:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wl3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":301}' # _entry.id 3WL3 # _exptl.entry_id 3WL3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3WL3 _cell.length_a 77.561 _cell.length_b 77.561 _cell.length_c 229.114 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WL3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 I N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 44 A HIS 44 1_555 D ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc2 A OD2 ASP 47 A ASP 47 1_555 D ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc3 A NE2 HIS 155 A HIS 155 1_555 D ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc4 D ZN ZN . A ZN 301 1_555 E O1 PO4 . A PO4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.812 ? metalc ? metalc5 B ND1 HIS 44 B HIS 44 1_555 I ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc6 B OD2 ASP 47 B ASP 47 1_555 I ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc7 B NE2 HIS 155 B HIS 155 1_555 I ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc8 I ZN ZN . B ZN 301 1_555 J O2 PO4 . B PO4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.741 ? metalc ? metalc9 C ND1 HIS 44 C HIS 44 1_555 N ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc10 C OD2 ASP 47 C ASP 47 1_555 N ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc11 C NE2 HIS 155 C HIS 155 1_555 N ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc12 N ZN ZN . C ZN 301 1_555 O O3 PO4 . C PO4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3WL3 _atom_sites.fract_transf_matrix[1][1] 0.012893 _atom_sites.fract_transf_matrix[1][2] 0.007444 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014888 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004365 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ZN A 1 301 1 ZN ZN . E 3 PO4 A 1 302 1 PO4 PO4 . F 3 PO4 A 1 303 4 PO4 PO4 . G 3 PO4 A 1 304 5 PO4 PO4 . H 4 GOL A 1 305 1 GOL GOL . I 2 ZN B 1 301 2 ZN ZN . J 3 PO4 B 1 302 2 PO4 PO4 . K 3 PO4 B 1 303 6 PO4 PO4 . L 4 GOL B 1 304 2 GOL GOL . M 4 GOL B 1 305 3 GOL GOL . N 2 ZN C 1 301 3 ZN ZN . O 3 PO4 C 1 302 3 PO4 PO4 . P 5 HOH A 1 401 3 HOH HOH . P 5 HOH A 2 402 4 HOH HOH . P 5 HOH A 3 403 5 HOH HOH . P 5 HOH A 4 404 8 HOH HOH . P 5 HOH A 5 405 11 HOH HOH . P 5 HOH A 6 406 15 HOH HOH . P 5 HOH A 7 407 17 HOH HOH . P 5 HOH A 8 408 21 HOH HOH . P 5 HOH A 9 409 23 HOH HOH . P 5 HOH A 10 410 26 HOH HOH . P 5 HOH A 11 411 30 HOH HOH . P 5 HOH A 12 412 32 HOH HOH . P 5 HOH A 13 413 33 HOH HOH . P 5 HOH A 14 414 35 HOH HOH . P 5 HOH A 15 415 36 HOH HOH . P 5 HOH A 16 416 37 HOH HOH . P 5 HOH A 17 417 39 HOH HOH . P 5 HOH A 18 418 40 HOH HOH . P 5 HOH A 19 419 41 HOH HOH . P 5 HOH A 20 420 45 HOH HOH . P 5 HOH A 21 421 46 HOH HOH . P 5 HOH A 22 422 51 HOH HOH . P 5 HOH A 23 423 53 HOH HOH . P 5 HOH A 24 424 54 HOH HOH . P 5 HOH A 25 425 58 HOH HOH . P 5 HOH A 26 426 61 HOH HOH . P 5 HOH A 27 427 62 HOH HOH . P 5 HOH A 28 428 64 HOH HOH . P 5 HOH A 29 429 65 HOH HOH . P 5 HOH A 30 430 66 HOH HOH . P 5 HOH A 31 431 67 HOH HOH . P 5 HOH A 32 432 68 HOH HOH . P 5 HOH A 33 433 69 HOH HOH . P 5 HOH A 34 434 70 HOH HOH . P 5 HOH A 35 435 71 HOH HOH . P 5 HOH A 36 436 72 HOH HOH . P 5 HOH A 37 437 73 HOH HOH . P 5 HOH A 38 438 74 HOH HOH . P 5 HOH A 39 439 75 HOH HOH . P 5 HOH A 40 440 76 HOH HOH . P 5 HOH A 41 441 77 HOH HOH . P 5 HOH A 42 442 78 HOH HOH . P 5 HOH A 43 443 79 HOH HOH . P 5 HOH A 44 444 80 HOH HOH . P 5 HOH A 45 445 81 HOH HOH . P 5 HOH A 46 446 82 HOH HOH . P 5 HOH A 47 447 83 HOH HOH . P 5 HOH A 48 448 84 HOH HOH . P 5 HOH A 49 449 85 HOH HOH . P 5 HOH A 50 450 86 HOH HOH . P 5 HOH A 51 451 97 HOH HOH . P 5 HOH A 52 452 104 HOH HOH . P 5 HOH A 53 453 106 HOH HOH . P 5 HOH A 54 454 107 HOH HOH . P 5 HOH A 55 455 108 HOH HOH . P 5 HOH A 56 456 109 HOH HOH . P 5 HOH A 57 457 110 HOH HOH . P 5 HOH A 58 458 116 HOH HOH . P 5 HOH A 59 459 117 HOH HOH . P 5 HOH A 60 460 120 HOH HOH . Q 5 HOH B 1 401 7 HOH HOH . Q 5 HOH B 2 402 10 HOH HOH . Q 5 HOH B 3 403 12 HOH HOH . Q 5 HOH B 4 404 16 HOH HOH . Q 5 HOH B 5 405 18 HOH HOH . Q 5 HOH B 6 406 19 HOH HOH . Q 5 HOH B 7 407 20 HOH HOH . Q 5 HOH B 8 408 22 HOH HOH . Q 5 HOH B 9 409 24 HOH HOH . Q 5 HOH B 10 410 27 HOH HOH . Q 5 HOH B 11 411 34 HOH HOH . Q 5 HOH B 12 412 42 HOH HOH . Q 5 HOH B 13 413 43 HOH HOH . Q 5 HOH B 14 414 44 HOH HOH . Q 5 HOH B 15 415 48 HOH HOH . Q 5 HOH B 16 416 49 HOH HOH . Q 5 HOH B 17 417 50 HOH HOH . Q 5 HOH B 18 418 52 HOH HOH . Q 5 HOH B 19 419 87 HOH HOH . Q 5 HOH B 20 420 88 HOH HOH . Q 5 HOH B 21 421 89 HOH HOH . Q 5 HOH B 22 422 90 HOH HOH . Q 5 HOH B 23 423 91 HOH HOH . Q 5 HOH B 24 424 92 HOH HOH . Q 5 HOH B 25 425 99 HOH HOH . Q 5 HOH B 26 426 101 HOH HOH . Q 5 HOH B 27 427 105 HOH HOH . Q 5 HOH B 28 428 111 HOH HOH . Q 5 HOH B 29 429 112 HOH HOH . Q 5 HOH B 30 430 113 HOH HOH . Q 5 HOH B 31 431 114 HOH HOH . Q 5 HOH B 32 432 115 HOH HOH . Q 5 HOH B 33 433 118 HOH HOH . Q 5 HOH B 34 434 119 HOH HOH . Q 5 HOH B 35 435 121 HOH HOH . Q 5 HOH B 36 436 122 HOH HOH . Q 5 HOH B 37 437 129 HOH HOH . R 5 HOH C 1 401 1 HOH HOH . R 5 HOH C 2 402 2 HOH HOH . R 5 HOH C 3 403 6 HOH HOH . R 5 HOH C 4 404 9 HOH HOH . R 5 HOH C 5 405 13 HOH HOH . R 5 HOH C 6 406 14 HOH HOH . R 5 HOH C 7 407 25 HOH HOH . R 5 HOH C 8 408 28 HOH HOH . R 5 HOH C 9 409 29 HOH HOH . R 5 HOH C 10 410 31 HOH HOH . R 5 HOH C 11 411 38 HOH HOH . R 5 HOH C 12 412 47 HOH HOH . R 5 HOH C 13 413 55 HOH HOH . R 5 HOH C 14 414 56 HOH HOH . R 5 HOH C 15 415 57 HOH HOH . R 5 HOH C 16 416 59 HOH HOH . R 5 HOH C 17 417 60 HOH HOH . R 5 HOH C 18 418 63 HOH HOH . R 5 HOH C 19 419 93 HOH HOH . R 5 HOH C 20 420 94 HOH HOH . R 5 HOH C 21 421 95 HOH HOH . R 5 HOH C 22 422 96 HOH HOH . R 5 HOH C 23 423 98 HOH HOH . R 5 HOH C 24 424 100 HOH HOH . R 5 HOH C 25 425 102 HOH HOH . R 5 HOH C 26 426 103 HOH HOH . R 5 HOH C 27 427 123 HOH HOH . R 5 HOH C 28 428 124 HOH HOH . R 5 HOH C 29 429 125 HOH HOH . R 5 HOH C 30 430 126 HOH HOH . R 5 HOH C 31 431 127 HOH HOH . R 5 HOH C 32 432 128 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id N _atom_site.label_entity_id 2 _atom_site.Cartn_x 18.155 _atom_site.Cartn_y 44.748 _atom_site.Cartn_z 15.14 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #