data_3WLD # _model_server_result.job_id w3fCiPuRnEZig-Xd2k0lOA _model_server_result.datetime_utc '2024-10-11 10:23:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wld # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 3WLD # _exptl.entry_id 3WLD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WLD _cell.length_a 120.88 _cell.length_b 120.88 _cell.length_c 97.62 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WLD _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 221 A LEU 221 1_555 A N1 CRO 222 A CRO 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C3 CRO 222 A CRO 223 1_555 A N VAL 223 A VAL 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? metalc ? metalc1 A OD1 ASP 320 A ASP 322 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc2 A OD1 ASP 322 A ASP 324 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc3 A OD1 ASP 324 A ASP 326 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc4 A O THR 326 A THR 328 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc5 A OE1 GLU 331 A GLU 333 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc6 A OE2 GLU 331 A GLU 333 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc7 A OD1 ASP 356 A ASP 358 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc8 A OD1 ASP 358 A ASP 360 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc9 A OD1 ASP 360 A ASP 362 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc10 A O THR 362 A THR 364 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc11 A OE1 GLU 367 A GLU 369 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc12 A OE2 GLU 367 A GLU 369 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc13 A OD1 ASP 393 A ASP 395 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc14 A OD1 ASP 395 A ASP 397 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc15 A OD1 ASN 397 A ASN 399 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc16 A O TYR 399 A TYR 401 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc17 A OE1 GLU 404 A GLU 406 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc18 A OE2 GLU 404 A GLU 406 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc19 A OD1 ASP 429 A ASP 431 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc20 A OD1 ASP 431 A ASP 433 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc21 A OD1 ASP 433 A ASP 435 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc22 A O GLN 435 A GLN 437 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc23 A OE1 GLU 440 A GLU 442 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc24 A OE2 GLU 440 A GLU 442 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc25 B CA CA . A CA 501 1_555 F O HOH . A HOH 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc26 C CA CA . A CA 502 1_555 F O HOH . A HOH 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc27 D CA CA . A CA 503 1_555 F O HOH . A HOH 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc28 E CA CA . A CA 504 1_555 F O HOH . A HOH 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3WLD _atom_sites.fract_transf_matrix[1][1] 0.008273 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008273 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 501 505 CA CA . C 2 CA A 1 502 506 CA CA . D 2 CA A 1 503 507 CA CA . E 2 CA A 1 504 508 CA CA . F 3 HOH A 1 601 1 HOH HOH . F 3 HOH A 2 602 2 HOH HOH . F 3 HOH A 3 603 3 HOH HOH . F 3 HOH A 4 604 4 HOH HOH . F 3 HOH A 5 605 5 HOH HOH . F 3 HOH A 6 606 6 HOH HOH . F 3 HOH A 7 607 7 HOH HOH . F 3 HOH A 8 608 8 HOH HOH . F 3 HOH A 9 609 9 HOH HOH . F 3 HOH A 10 610 10 HOH HOH . F 3 HOH A 11 611 11 HOH HOH . F 3 HOH A 12 612 12 HOH HOH . F 3 HOH A 13 613 13 HOH HOH . F 3 HOH A 14 614 14 HOH HOH . F 3 HOH A 15 615 15 HOH HOH . F 3 HOH A 16 616 16 HOH HOH . F 3 HOH A 17 617 17 HOH HOH . F 3 HOH A 18 618 18 HOH HOH . F 3 HOH A 19 619 19 HOH HOH . F 3 HOH A 20 620 20 HOH HOH . F 3 HOH A 21 621 21 HOH HOH . F 3 HOH A 22 622 22 HOH HOH . F 3 HOH A 23 623 23 HOH HOH . F 3 HOH A 24 624 24 HOH HOH . F 3 HOH A 25 625 25 HOH HOH . F 3 HOH A 26 626 26 HOH HOH . F 3 HOH A 27 627 27 HOH HOH . F 3 HOH A 28 628 28 HOH HOH . F 3 HOH A 29 629 29 HOH HOH . F 3 HOH A 30 630 30 HOH HOH . F 3 HOH A 31 631 32 HOH HOH . F 3 HOH A 32 632 34 HOH HOH . F 3 HOH A 33 633 35 HOH HOH . F 3 HOH A 34 634 36 HOH HOH . F 3 HOH A 35 635 38 HOH HOH . F 3 HOH A 36 636 39 HOH HOH . F 3 HOH A 37 637 40 HOH HOH . F 3 HOH A 38 638 41 HOH HOH . F 3 HOH A 39 639 42 HOH HOH . F 3 HOH A 40 640 43 HOH HOH . F 3 HOH A 41 641 44 HOH HOH . F 3 HOH A 42 642 45 HOH HOH . F 3 HOH A 43 643 46 HOH HOH . F 3 HOH A 44 644 47 HOH HOH . F 3 HOH A 45 645 48 HOH HOH . F 3 HOH A 46 646 49 HOH HOH . F 3 HOH A 47 647 50 HOH HOH . F 3 HOH A 48 648 52 HOH HOH . F 3 HOH A 49 649 53 HOH HOH . F 3 HOH A 50 650 54 HOH HOH . F 3 HOH A 51 651 55 HOH HOH . F 3 HOH A 52 652 56 HOH HOH . F 3 HOH A 53 653 57 HOH HOH . F 3 HOH A 54 654 58 HOH HOH . F 3 HOH A 55 655 60 HOH HOH . F 3 HOH A 56 656 63 HOH HOH . F 3 HOH A 57 657 64 HOH HOH . F 3 HOH A 58 658 66 HOH HOH . F 3 HOH A 59 659 67 HOH HOH . F 3 HOH A 60 660 68 HOH HOH . F 3 HOH A 61 661 69 HOH HOH . F 3 HOH A 62 662 70 HOH HOH . F 3 HOH A 63 663 71 HOH HOH . F 3 HOH A 64 664 72 HOH HOH . F 3 HOH A 65 665 73 HOH HOH . F 3 HOH A 66 666 74 HOH HOH . F 3 HOH A 67 667 75 HOH HOH . F 3 HOH A 68 668 76 HOH HOH . F 3 HOH A 69 669 77 HOH HOH . F 3 HOH A 70 670 78 HOH HOH . F 3 HOH A 71 671 79 HOH HOH . F 3 HOH A 72 672 80 HOH HOH . F 3 HOH A 73 673 81 HOH HOH . F 3 HOH A 74 674 82 HOH HOH . F 3 HOH A 75 675 83 HOH HOH . F 3 HOH A 76 676 84 HOH HOH . F 3 HOH A 77 677 85 HOH HOH . F 3 HOH A 78 678 86 HOH HOH . F 3 HOH A 79 679 87 HOH HOH . F 3 HOH A 80 680 88 HOH HOH . F 3 HOH A 81 681 91 HOH HOH . F 3 HOH A 82 682 92 HOH HOH . F 3 HOH A 83 683 93 HOH HOH . F 3 HOH A 84 684 94 HOH HOH . F 3 HOH A 85 685 95 HOH HOH . F 3 HOH A 86 686 96 HOH HOH . F 3 HOH A 87 687 97 HOH HOH . F 3 HOH A 88 688 98 HOH HOH . F 3 HOH A 89 689 99 HOH HOH . F 3 HOH A 90 690 100 HOH HOH . F 3 HOH A 91 691 103 HOH HOH . F 3 HOH A 92 692 104 HOH HOH . F 3 HOH A 93 693 105 HOH HOH . F 3 HOH A 94 694 107 HOH HOH . F 3 HOH A 95 695 108 HOH HOH . F 3 HOH A 96 696 109 HOH HOH . F 3 HOH A 97 697 110 HOH HOH . F 3 HOH A 98 698 111 HOH HOH . F 3 HOH A 99 699 113 HOH HOH . F 3 HOH A 100 700 114 HOH HOH . F 3 HOH A 101 701 115 HOH HOH . F 3 HOH A 102 702 116 HOH HOH . F 3 HOH A 103 703 117 HOH HOH . F 3 HOH A 104 704 119 HOH HOH . F 3 HOH A 105 705 120 HOH HOH . F 3 HOH A 106 706 121 HOH HOH . F 3 HOH A 107 707 122 HOH HOH . F 3 HOH A 108 708 123 HOH HOH . F 3 HOH A 109 709 124 HOH HOH . F 3 HOH A 110 710 125 HOH HOH . F 3 HOH A 111 711 126 HOH HOH . F 3 HOH A 112 712 127 HOH HOH . F 3 HOH A 113 713 129 HOH HOH . F 3 HOH A 114 714 130 HOH HOH . F 3 HOH A 115 715 131 HOH HOH . F 3 HOH A 116 716 132 HOH HOH . F 3 HOH A 117 717 133 HOH HOH . F 3 HOH A 118 718 134 HOH HOH . F 3 HOH A 119 719 135 HOH HOH . F 3 HOH A 120 720 136 HOH HOH . F 3 HOH A 121 721 137 HOH HOH . F 3 HOH A 122 722 138 HOH HOH . F 3 HOH A 123 723 139 HOH HOH . F 3 HOH A 124 724 140 HOH HOH . F 3 HOH A 125 725 141 HOH HOH . F 3 HOH A 126 726 142 HOH HOH . F 3 HOH A 127 727 143 HOH HOH . F 3 HOH A 128 728 145 HOH HOH . F 3 HOH A 129 729 146 HOH HOH . F 3 HOH A 130 730 147 HOH HOH . F 3 HOH A 131 731 148 HOH HOH . F 3 HOH A 132 732 149 HOH HOH . F 3 HOH A 133 733 151 HOH HOH . F 3 HOH A 134 734 152 HOH HOH . F 3 HOH A 135 735 153 HOH HOH . F 3 HOH A 136 736 154 HOH HOH . F 3 HOH A 137 737 155 HOH HOH . F 3 HOH A 138 738 156 HOH HOH . F 3 HOH A 139 739 157 HOH HOH . F 3 HOH A 140 740 158 HOH HOH . F 3 HOH A 141 741 159 HOH HOH . F 3 HOH A 142 742 160 HOH HOH . F 3 HOH A 143 743 161 HOH HOH . F 3 HOH A 144 744 162 HOH HOH . F 3 HOH A 145 745 163 HOH HOH . F 3 HOH A 146 746 165 HOH HOH . F 3 HOH A 147 747 166 HOH HOH . F 3 HOH A 148 748 168 HOH HOH . F 3 HOH A 149 749 169 HOH HOH . F 3 HOH A 150 750 170 HOH HOH . F 3 HOH A 151 751 171 HOH HOH . F 3 HOH A 152 752 172 HOH HOH . F 3 HOH A 153 753 173 HOH HOH . F 3 HOH A 154 754 174 HOH HOH . F 3 HOH A 155 755 175 HOH HOH . F 3 HOH A 156 756 176 HOH HOH . F 3 HOH A 157 757 177 HOH HOH . F 3 HOH A 158 758 178 HOH HOH . F 3 HOH A 159 759 179 HOH HOH . F 3 HOH A 160 760 180 HOH HOH . F 3 HOH A 161 761 181 HOH HOH . F 3 HOH A 162 762 182 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 38.53 _atom_site.Cartn_y 147.251 _atom_site.Cartn_z 47.435 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.97 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #