data_3WLX
#
_model_server_result.job_id            1ENQTnDVUaCdpitpAGimGg 
_model_server_result.datetime_utc      '2024-10-10 21:30:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3wlx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    3WLX 
#
_exptl.entry_id    3WLX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              306.209 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE] 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3WLX 
_cell.length_a            75.73 
_cell.length_b            100.34 
_cell.length_c            174.62 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3WLX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_654 -x+1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 75.73 0 -87.31 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H15 N2 O7 P' 
_chem_comp.formula_weight    306.209 
_chem_comp.id                PLG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE] 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     N-PYRIDOXYL-GLYCINE-5-MONOPHOSPHATE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLG doub 260 n y 
N1 C6 PLG sing 261 n y 
C2 C2A PLG sing 262 n n 
C2 C3 PLG sing 263 n y 
C2A H2A1 PLG sing 264 n n 
C2A H2A2 PLG sing 265 n n 
C2A H2A3 PLG sing 266 n n 
C3 O3 PLG sing 267 n n 
C3 C4 PLG doub 268 n y 
O3 HO3 PLG sing 269 n n 
C4 C4A PLG sing 270 n n 
C4 C5 PLG sing 271 n y 
C4A N PLG sing 272 n n 
C4A H4A1 PLG sing 273 n n 
C4A H4A2 PLG sing 274 n n 
C5 C6 PLG doub 275 n y 
C5 C5A PLG sing 276 n n 
C6 H6 PLG sing 277 n n 
C5A OP4 PLG sing 278 n n 
C5A H5A1 PLG sing 279 n n 
C5A H5A2 PLG sing 280 n n 
OP4 P PLG sing 281 n n 
P OP1 PLG doub 282 n n 
P OP2 PLG sing 283 n n 
P OP3 PLG sing 284 n n 
OP2 HOP2 PLG sing 285 n n 
OP3 HOP3 PLG sing 286 n n 
C O PLG doub 287 n n 
C OXT PLG sing 288 n n 
C CA PLG sing 289 n n 
OXT HXT PLG sing 290 n n 
CA N PLG sing 291 n n 
CA HA2 PLG sing 292 n n 
CA HA1 PLG sing 293 n n 
N H PLG sing 294 n n 
#
_atom_sites.entry_id                     3WLX 
_atom_sites.fract_transf_matrix[1][1]    0.013205 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009966 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005727 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLG B 1 401 335 PLG PLG . 
D 2 PLG A 1 401 335 PLG PLG . 
E 3 HOH B 1 501 1 HOH HOH . 
E 3 HOH B 2 502 4 HOH HOH . 
E 3 HOH B 3 503 5 HOH HOH . 
E 3 HOH B 4 504 7 HOH HOH . 
E 3 HOH B 5 505 8 HOH HOH . 
E 3 HOH B 6 506 10 HOH HOH . 
E 3 HOH B 7 507 11 HOH HOH . 
E 3 HOH B 8 508 13 HOH HOH . 
E 3 HOH B 9 509 15 HOH HOH . 
E 3 HOH B 10 510 16 HOH HOH . 
E 3 HOH B 11 511 21 HOH HOH . 
E 3 HOH B 12 512 24 HOH HOH . 
E 3 HOH B 13 513 26 HOH HOH . 
E 3 HOH B 14 514 27 HOH HOH . 
E 3 HOH B 15 515 28 HOH HOH . 
E 3 HOH B 16 516 29 HOH HOH . 
E 3 HOH B 17 517 33 HOH HOH . 
E 3 HOH B 18 518 34 HOH HOH . 
E 3 HOH B 19 519 41 HOH HOH . 
E 3 HOH B 20 520 42 HOH HOH . 
E 3 HOH B 21 521 43 HOH HOH . 
E 3 HOH B 22 522 45 HOH HOH . 
E 3 HOH B 23 523 46 HOH HOH . 
E 3 HOH B 24 524 47 HOH HOH . 
E 3 HOH B 25 525 50 HOH HOH . 
E 3 HOH B 26 526 58 HOH HOH . 
E 3 HOH B 27 527 62 HOH HOH . 
E 3 HOH B 28 528 63 HOH HOH . 
E 3 HOH B 29 529 64 HOH HOH . 
E 3 HOH B 30 530 67 HOH HOH . 
E 3 HOH B 31 531 68 HOH HOH . 
E 3 HOH B 32 532 69 HOH HOH . 
E 3 HOH B 33 533 70 HOH HOH . 
E 3 HOH B 34 534 73 HOH HOH . 
E 3 HOH B 35 535 74 HOH HOH . 
E 3 HOH B 36 536 75 HOH HOH . 
E 3 HOH B 37 537 76 HOH HOH . 
E 3 HOH B 38 538 77 HOH HOH . 
E 3 HOH B 39 539 79 HOH HOH . 
E 3 HOH B 40 540 80 HOH HOH . 
E 3 HOH B 41 541 81 HOH HOH . 
E 3 HOH B 42 542 83 HOH HOH . 
E 3 HOH B 43 543 84 HOH HOH . 
E 3 HOH B 44 544 85 HOH HOH . 
E 3 HOH B 45 545 89 HOH HOH . 
E 3 HOH B 46 546 92 HOH HOH . 
E 3 HOH B 47 547 93 HOH HOH . 
E 3 HOH B 48 548 94 HOH HOH . 
E 3 HOH B 49 549 95 HOH HOH . 
E 3 HOH B 50 550 98 HOH HOH . 
E 3 HOH B 51 551 100 HOH HOH . 
E 3 HOH B 52 552 102 HOH HOH . 
E 3 HOH B 53 553 103 HOH HOH . 
E 3 HOH B 54 554 106 HOH HOH . 
E 3 HOH B 55 555 109 HOH HOH . 
E 3 HOH B 56 556 111 HOH HOH . 
E 3 HOH B 57 557 120 HOH HOH . 
E 3 HOH B 58 558 121 HOH HOH . 
E 3 HOH B 59 559 125 HOH HOH . 
E 3 HOH B 60 560 128 HOH HOH . 
E 3 HOH B 61 561 131 HOH HOH . 
E 3 HOH B 62 562 139 HOH HOH . 
E 3 HOH B 63 563 141 HOH HOH . 
E 3 HOH B 64 564 143 HOH HOH . 
E 3 HOH B 65 565 144 HOH HOH . 
E 3 HOH B 66 566 147 HOH HOH . 
E 3 HOH B 67 567 149 HOH HOH . 
E 3 HOH B 68 568 151 HOH HOH . 
E 3 HOH B 69 569 153 HOH HOH . 
E 3 HOH B 70 570 154 HOH HOH . 
E 3 HOH B 71 571 157 HOH HOH . 
E 3 HOH B 72 572 160 HOH HOH . 
E 3 HOH B 73 573 164 HOH HOH . 
E 3 HOH B 74 574 166 HOH HOH . 
E 3 HOH B 75 575 170 HOH HOH . 
E 3 HOH B 76 576 173 HOH HOH . 
E 3 HOH B 77 577 174 HOH HOH . 
E 3 HOH B 78 578 175 HOH HOH . 
E 3 HOH B 79 579 177 HOH HOH . 
E 3 HOH B 80 580 178 HOH HOH . 
E 3 HOH B 81 581 180 HOH HOH . 
E 3 HOH B 82 582 183 HOH HOH . 
E 3 HOH B 83 583 186 HOH HOH . 
E 3 HOH B 84 584 197 HOH HOH . 
E 3 HOH B 85 585 198 HOH HOH . 
E 3 HOH B 86 586 207 HOH HOH . 
E 3 HOH B 87 587 211 HOH HOH . 
E 3 HOH B 88 588 213 HOH HOH . 
E 3 HOH B 89 589 225 HOH HOH . 
E 3 HOH B 90 590 229 HOH HOH . 
E 3 HOH B 91 591 230 HOH HOH . 
E 3 HOH B 92 592 234 HOH HOH . 
E 3 HOH B 93 593 238 HOH HOH . 
E 3 HOH B 94 594 239 HOH HOH . 
E 3 HOH B 95 595 245 HOH HOH . 
E 3 HOH B 96 596 247 HOH HOH . 
E 3 HOH B 97 597 249 HOH HOH . 
E 3 HOH B 98 598 263 HOH HOH . 
E 3 HOH B 99 599 279 HOH HOH . 
E 3 HOH B 100 600 280 HOH HOH . 
E 3 HOH B 101 601 281 HOH HOH . 
E 3 HOH B 102 602 282 HOH HOH . 
E 3 HOH B 103 603 283 HOH HOH . 
E 3 HOH B 104 604 284 HOH HOH . 
E 3 HOH B 105 605 285 HOH HOH . 
E 3 HOH B 106 606 287 HOH HOH . 
E 3 HOH B 107 607 288 HOH HOH . 
E 3 HOH B 108 608 293 HOH HOH . 
E 3 HOH B 109 609 297 HOH HOH . 
E 3 HOH B 110 610 292 HOH HOH . 
F 3 HOH A 1 501 2 HOH HOH . 
F 3 HOH A 2 502 3 HOH HOH . 
F 3 HOH A 3 503 6 HOH HOH . 
F 3 HOH A 4 504 9 HOH HOH . 
F 3 HOH A 5 505 12 HOH HOH . 
F 3 HOH A 6 506 14 HOH HOH . 
F 3 HOH A 7 507 17 HOH HOH . 
F 3 HOH A 8 508 18 HOH HOH . 
F 3 HOH A 9 509 19 HOH HOH . 
F 3 HOH A 10 510 20 HOH HOH . 
F 3 HOH A 11 511 22 HOH HOH . 
F 3 HOH A 12 512 23 HOH HOH . 
F 3 HOH A 13 513 25 HOH HOH . 
F 3 HOH A 14 514 30 HOH HOH . 
F 3 HOH A 15 515 31 HOH HOH . 
F 3 HOH A 16 516 35 HOH HOH . 
F 3 HOH A 17 517 37 HOH HOH . 
F 3 HOH A 18 518 38 HOH HOH . 
F 3 HOH A 19 519 39 HOH HOH . 
F 3 HOH A 20 520 40 HOH HOH . 
F 3 HOH A 21 521 44 HOH HOH . 
F 3 HOH A 22 522 48 HOH HOH . 
F 3 HOH A 23 523 49 HOH HOH . 
F 3 HOH A 24 524 51 HOH HOH . 
F 3 HOH A 25 525 52 HOH HOH . 
F 3 HOH A 26 526 53 HOH HOH . 
F 3 HOH A 27 527 54 HOH HOH . 
F 3 HOH A 28 528 55 HOH HOH . 
F 3 HOH A 29 529 56 HOH HOH . 
F 3 HOH A 30 530 57 HOH HOH . 
F 3 HOH A 31 531 59 HOH HOH . 
F 3 HOH A 32 532 60 HOH HOH . 
F 3 HOH A 33 533 61 HOH HOH . 
F 3 HOH A 34 534 65 HOH HOH . 
F 3 HOH A 35 535 66 HOH HOH . 
F 3 HOH A 36 536 71 HOH HOH . 
F 3 HOH A 37 537 72 HOH HOH . 
F 3 HOH A 38 538 78 HOH HOH . 
F 3 HOH A 39 539 82 HOH HOH . 
F 3 HOH A 40 540 87 HOH HOH . 
F 3 HOH A 41 541 90 HOH HOH . 
F 3 HOH A 42 542 91 HOH HOH . 
F 3 HOH A 43 543 96 HOH HOH . 
F 3 HOH A 44 544 97 HOH HOH . 
F 3 HOH A 45 545 101 HOH HOH . 
F 3 HOH A 46 546 104 HOH HOH . 
F 3 HOH A 47 547 105 HOH HOH . 
F 3 HOH A 48 548 107 HOH HOH . 
F 3 HOH A 49 549 110 HOH HOH . 
F 3 HOH A 50 550 112 HOH HOH . 
F 3 HOH A 51 551 113 HOH HOH . 
F 3 HOH A 52 552 117 HOH HOH . 
F 3 HOH A 53 553 122 HOH HOH . 
F 3 HOH A 54 554 124 HOH HOH . 
F 3 HOH A 55 555 127 HOH HOH . 
F 3 HOH A 56 556 129 HOH HOH . 
F 3 HOH A 57 557 132 HOH HOH . 
F 3 HOH A 58 558 134 HOH HOH . 
F 3 HOH A 59 559 136 HOH HOH . 
F 3 HOH A 60 560 137 HOH HOH . 
F 3 HOH A 61 561 140 HOH HOH . 
F 3 HOH A 62 562 145 HOH HOH . 
F 3 HOH A 63 563 146 HOH HOH . 
F 3 HOH A 64 564 148 HOH HOH . 
F 3 HOH A 65 565 150 HOH HOH . 
F 3 HOH A 66 566 152 HOH HOH . 
F 3 HOH A 67 567 155 HOH HOH . 
F 3 HOH A 68 568 156 HOH HOH . 
F 3 HOH A 69 569 158 HOH HOH . 
F 3 HOH A 70 570 161 HOH HOH . 
F 3 HOH A 71 571 162 HOH HOH . 
F 3 HOH A 72 572 163 HOH HOH . 
F 3 HOH A 73 573 165 HOH HOH . 
F 3 HOH A 74 574 168 HOH HOH . 
F 3 HOH A 75 575 169 HOH HOH . 
F 3 HOH A 76 576 171 HOH HOH . 
F 3 HOH A 77 577 179 HOH HOH . 
F 3 HOH A 78 578 182 HOH HOH . 
F 3 HOH A 79 579 185 HOH HOH . 
F 3 HOH A 80 580 191 HOH HOH . 
F 3 HOH A 81 581 193 HOH HOH . 
F 3 HOH A 82 582 194 HOH HOH . 
F 3 HOH A 83 583 195 HOH HOH . 
F 3 HOH A 84 584 196 HOH HOH . 
F 3 HOH A 85 585 199 HOH HOH . 
F 3 HOH A 86 586 200 HOH HOH . 
F 3 HOH A 87 587 202 HOH HOH . 
F 3 HOH A 88 588 203 HOH HOH . 
F 3 HOH A 89 589 206 HOH HOH . 
F 3 HOH A 90 590 210 HOH HOH . 
F 3 HOH A 91 591 214 HOH HOH . 
F 3 HOH A 92 592 215 HOH HOH . 
F 3 HOH A 93 593 218 HOH HOH . 
F 3 HOH A 94 594 221 HOH HOH . 
F 3 HOH A 95 595 226 HOH HOH . 
F 3 HOH A 96 596 233 HOH HOH . 
F 3 HOH A 97 597 235 HOH HOH . 
F 3 HOH A 98 598 236 HOH HOH . 
F 3 HOH A 99 599 237 HOH HOH . 
F 3 HOH A 100 600 244 HOH HOH . 
F 3 HOH A 101 601 246 HOH HOH . 
F 3 HOH A 102 602 252 HOH HOH . 
F 3 HOH A 103 603 260 HOH HOH . 
F 3 HOH A 104 604 268 HOH HOH . 
F 3 HOH A 105 605 270 HOH HOH . 
F 3 HOH A 106 606 276 HOH HOH . 
F 3 HOH A 107 607 277 HOH HOH . 
F 3 HOH A 108 608 278 HOH HOH . 
F 3 HOH A 109 609 286 HOH HOH . 
F 3 HOH A 110 610 289 HOH HOH . 
F 3 HOH A 111 611 290 HOH HOH . 
F 3 HOH A 112 612 291 HOH HOH . 
F 3 HOH A 113 613 294 HOH HOH . 
F 3 HOH A 114 614 299 HOH HOH . 
F 3 HOH A 115 615 300 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLG . . . C 2 51.757 26.884 -25.436 1 18.29 ? N1 PLG 401 B 1 
HETATM 2 C C2 PLG . . . C 2 52.849 26.35 -24.844 1 24.25 ? C2 PLG 401 B 1 
HETATM 3 C C2A PLG . . . C 2 54.181 27.038 -24.971 1 23.81 ? C2A PLG 401 B 1 
HETATM 4 C C3 PLG . . . C 2 52.74 25.091 -24.068 1 24.96 ? C3 PLG 401 B 1 
HETATM 5 O O3 PLG . . . C 2 53.828 24.539 -23.464 1 30.79 ? O3 PLG 401 B 1 
HETATM 6 C C4 PLG . . . C 2 51.409 24.457 -23.97 1 26.47 ? C4 PLG 401 B 1 
HETATM 7 C C4A PLG . . . C 2 51.222 23.167 -23.203 1 31.99 ? C4A PLG 401 B 1 
HETATM 8 C C5 PLG . . . C 2 50.292 25.144 -24.669 1 26.77 ? C5 PLG 401 B 1 
HETATM 9 C C6 PLG . . . C 2 50.54 26.325 -25.364 1 19.85 ? C6 PLG 401 B 1 
HETATM 10 C C5A PLG . . . C 2 48.893 24.575 -24.642 1 26.51 ? C5A PLG 401 B 1 
HETATM 11 O OP4 PLG . . . C 2 48.297 24.668 -23.353 1 35.32 ? OP4 PLG 401 B 1 
HETATM 12 P P PLG . . . C 2 47.145 23.613 -22.963 1 24.76 ? P PLG 401 B 1 
HETATM 13 O OP1 PLG . . . C 2 46.658 24.069 -21.61 1 25.55 ? OP1 PLG 401 B 1 
HETATM 14 O OP2 PLG . . . C 2 46.122 23.766 -24.063 1 23.58 ? OP2 PLG 401 B 1 
HETATM 15 O OP3 PLG . . . C 2 47.863 22.285 -22.982 1 24.26 ? OP3 PLG 401 B 1 
HETATM 16 C C PLG . . . C 2 53.281 20.91 -22.136 1 38.93 ? C PLG 401 B 1 
HETATM 17 O O PLG . . . C 2 53.191 20.156 -21.142 1 35.26 ? O PLG 401 B 1 
HETATM 18 O OXT PLG . . . C 2 54.223 21.717 -22.294 1 36.49 ? OXT PLG 401 B 1 
HETATM 19 C CA PLG . . . C 2 52.21 20.83 -23.2 1 35.51 ? CA PLG 401 B 1 
HETATM 20 N N PLG . . . C 2 51.982 22.11 -23.845 1 40.33 ? N PLG 401 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           20 
#