data_3WMP # _model_server_result.job_id 109K-i7RXSxQqSNOHirtHw _model_server_result.datetime_utc '2024-10-19 00:53:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wmp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HA","auth_seq_id":105}' # _entry.id 3WMP # _exptl.entry_id 3WMP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.55 _cell.angle_gamma 90 _cell.entry_id 3WMP _cell.length_a 52.03 _cell.length_b 189.95 _cell.length_c 57.05 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WMP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 N N N ? 4 O N N ? 4 Q N N ? 4 R N N ? 4 V N N ? 4 W N N ? 4 Z N N ? 4 AA N N ? 4 CA N N ? 4 DA N N ? 4 GA N N ? 4 HA N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n G NAG 1 G 1 NAG A 101 NAG 2 n G NAG 2 G 2 NAG A 102 NAG 2 n H NAG 1 H 1 NAG B 101 NAG 2 n H NAG 2 H 2 NAG B 102 NAG 2 n I NAG 1 I 1 NAG C 101 NAG 2 n I NAG 2 I 2 NAG C 102 NAG 2 n J NAG 1 J 1 NAG D 101 NAG 2 n J NAG 2 J 2 NAG D 102 NAG 2 n K NAG 1 K 1 NAG E 101 NAG 2 n K NAG 2 K 2 NAG E 102 NAG 2 n L NAG 1 L 1 NAG F 101 NAG 2 n L NAG 2 L 2 NAG F 102 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 8 1_555 A SG CYS 93 A CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 17 A CYS 17 1_555 A SG CYS 22 A CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 8 B CYS 8 1_555 B SG CYS 93 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 B SG CYS 17 B CYS 17 1_555 B SG CYS 22 B CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 C SG CYS 8 C CYS 8 1_555 C SG CYS 93 C CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 C SG CYS 17 C CYS 17 1_555 C SG CYS 22 C CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 D SG CYS 8 D CYS 8 1_555 D SG CYS 93 D CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 D SG CYS 17 D CYS 17 1_555 D SG CYS 22 D CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 E SG CYS 8 E CYS 8 1_555 E SG CYS 93 E CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf10 E SG CYS 17 E CYS 17 1_555 E SG CYS 22 E CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 F SG CYS 8 F CYS 8 1_555 F SG CYS 93 F CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf12 F SG CYS 17 F CYS 17 1_555 F SG CYS 22 F CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 60 A ASN 60 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale2 B ND2 ASN 60 B ASN 60 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? covale ? covale3 C ND2 ASN 60 C ASN 60 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.495 ? covale ? covale4 D ND2 ASN 60 D ASN 60 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? covale ? covale5 E ND2 ASN 60 E ASN 60 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale6 F ND2 ASN 60 F ASN 60 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale7 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 ? covale ? covale8 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? covale ? covale9 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 ? covale ? covale10 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 ? covale ? covale11 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 ? covale ? covale12 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? metalc ? metalc1 X NA NA . C NA 107 1_555 LA O HOH . C HOH 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.006 ? metalc ? metalc2 IA NA NA . F NA 106 1_555 OA O HOH . F HOH 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.135 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3WMP _atom_sites.fract_transf_matrix[1][1] 0.01922 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007205 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005265 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01872 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 MPD A 1 103 103 MPD MPD . N 4 CL A 1 104 104 CL CL . O 4 CL A 1 105 105 CL CL . P 5 NA A 1 106 106 NA NA . Q 4 CL B 1 103 104 CL CL . R 4 CL B 1 104 105 CL CL . S 5 NA B 1 105 106 NA NA . T 6 A2G C 1 101 103 A2G A2G . U 3 MPD C 1 104 103 MPD MPD . V 4 CL C 1 105 104 CL CL . W 4 CL C 1 106 105 CL CL . X 5 NA C 1 107 106 NA NA . Y 3 MPD D 1 103 103 MPD MPD . Z 4 CL D 1 104 103 CL CL . AA 4 CL D 1 105 104 CL CL . BA 5 NA D 1 106 105 NA NA . CA 4 CL E 1 103 104 CL CL . DA 4 CL E 1 104 105 CL CL . EA 5 NA E 1 105 106 NA NA . FA 7 GLA F 1 103 103 GLA GLA . GA 4 CL F 1 104 104 CL CL . HA 4 CL F 1 105 105 CL CL . IA 5 NA F 1 106 106 NA NA . JA 8 HOH A 1 501 501 HOH HOH . JA 8 HOH A 2 502 502 HOH HOH . JA 8 HOH A 3 503 503 HOH HOH . JA 8 HOH A 4 504 504 HOH HOH . JA 8 HOH A 5 505 505 HOH HOH . JA 8 HOH A 6 506 506 HOH HOH . JA 8 HOH A 7 507 507 HOH HOH . JA 8 HOH A 8 508 508 HOH HOH . JA 8 HOH A 9 509 509 HOH HOH . JA 8 HOH A 10 510 510 HOH HOH . JA 8 HOH A 11 511 511 HOH HOH . JA 8 HOH A 12 512 512 HOH HOH . JA 8 HOH A 13 513 513 HOH HOH . JA 8 HOH A 14 514 514 HOH HOH . JA 8 HOH A 15 515 515 HOH HOH . JA 8 HOH A 16 516 516 HOH HOH . JA 8 HOH A 17 517 517 HOH HOH . JA 8 HOH A 18 518 518 HOH HOH . JA 8 HOH A 19 519 519 HOH HOH . JA 8 HOH A 20 520 520 HOH HOH . KA 8 HOH B 1 201 201 HOH HOH . KA 8 HOH B 2 202 202 HOH HOH . KA 8 HOH B 3 203 203 HOH HOH . KA 8 HOH B 4 204 204 HOH HOH . KA 8 HOH B 5 205 205 HOH HOH . KA 8 HOH B 6 206 206 HOH HOH . KA 8 HOH B 7 207 207 HOH HOH . KA 8 HOH B 8 208 208 HOH HOH . KA 8 HOH B 9 209 209 HOH HOH . KA 8 HOH B 10 210 210 HOH HOH . KA 8 HOH B 11 211 211 HOH HOH . KA 8 HOH B 12 212 212 HOH HOH . KA 8 HOH B 13 213 213 HOH HOH . KA 8 HOH B 14 214 214 HOH HOH . KA 8 HOH B 15 215 215 HOH HOH . KA 8 HOH B 16 216 216 HOH HOH . LA 8 HOH C 1 201 201 HOH HOH . LA 8 HOH C 2 202 202 HOH HOH . LA 8 HOH C 3 203 203 HOH HOH . LA 8 HOH C 4 204 204 HOH HOH . LA 8 HOH C 5 205 205 HOH HOH . LA 8 HOH C 6 206 206 HOH HOH . LA 8 HOH C 7 207 207 HOH HOH . LA 8 HOH C 8 208 208 HOH HOH . LA 8 HOH C 9 209 209 HOH HOH . LA 8 HOH C 10 210 210 HOH HOH . LA 8 HOH C 11 211 211 HOH HOH . LA 8 HOH C 12 212 212 HOH HOH . LA 8 HOH C 13 213 213 HOH HOH . LA 8 HOH C 14 214 214 HOH HOH . LA 8 HOH C 15 215 215 HOH HOH . LA 8 HOH C 16 216 216 HOH HOH . LA 8 HOH C 17 217 217 HOH HOH . LA 8 HOH C 18 218 218 HOH HOH . LA 8 HOH C 19 219 219 HOH HOH . LA 8 HOH C 20 220 220 HOH HOH . LA 8 HOH C 21 221 221 HOH HOH . LA 8 HOH C 22 222 222 HOH HOH . LA 8 HOH C 23 223 223 HOH HOH . MA 8 HOH D 1 201 201 HOH HOH . MA 8 HOH D 2 202 202 HOH HOH . MA 8 HOH D 3 203 203 HOH HOH . MA 8 HOH D 4 204 204 HOH HOH . MA 8 HOH D 5 205 205 HOH HOH . MA 8 HOH D 6 206 206 HOH HOH . MA 8 HOH D 7 207 207 HOH HOH . MA 8 HOH D 8 208 208 HOH HOH . MA 8 HOH D 9 209 209 HOH HOH . MA 8 HOH D 10 210 210 HOH HOH . MA 8 HOH D 11 211 211 HOH HOH . MA 8 HOH D 12 212 212 HOH HOH . MA 8 HOH D 13 213 213 HOH HOH . MA 8 HOH D 14 214 214 HOH HOH . MA 8 HOH D 15 215 215 HOH HOH . MA 8 HOH D 16 216 216 HOH HOH . MA 8 HOH D 17 217 217 HOH HOH . MA 8 HOH D 18 218 218 HOH HOH . MA 8 HOH D 19 219 219 HOH HOH . MA 8 HOH D 20 220 220 HOH HOH . NA 8 HOH E 1 201 201 HOH HOH . NA 8 HOH E 2 202 202 HOH HOH . NA 8 HOH E 3 203 203 HOH HOH . NA 8 HOH E 4 204 204 HOH HOH . NA 8 HOH E 5 205 205 HOH HOH . NA 8 HOH E 6 206 206 HOH HOH . NA 8 HOH E 7 207 207 HOH HOH . NA 8 HOH E 8 208 208 HOH HOH . NA 8 HOH E 9 209 209 HOH HOH . NA 8 HOH E 10 210 210 HOH HOH . NA 8 HOH E 11 211 211 HOH HOH . NA 8 HOH E 12 212 212 HOH HOH . NA 8 HOH E 13 213 213 HOH HOH . NA 8 HOH E 14 214 214 HOH HOH . NA 8 HOH E 15 215 215 HOH HOH . NA 8 HOH E 16 216 216 HOH HOH . NA 8 HOH E 17 217 217 HOH HOH . NA 8 HOH E 18 218 218 HOH HOH . NA 8 HOH E 19 219 219 HOH HOH . NA 8 HOH E 20 220 220 HOH HOH . OA 8 HOH F 1 201 201 HOH HOH . OA 8 HOH F 2 202 202 HOH HOH . OA 8 HOH F 3 203 203 HOH HOH . OA 8 HOH F 4 204 204 HOH HOH . OA 8 HOH F 5 205 205 HOH HOH . OA 8 HOH F 6 206 206 HOH HOH . OA 8 HOH F 7 207 207 HOH HOH . OA 8 HOH F 8 208 208 HOH HOH . OA 8 HOH F 9 209 209 HOH HOH . OA 8 HOH F 10 210 210 HOH HOH . OA 8 HOH F 11 211 211 HOH HOH . OA 8 HOH F 12 212 212 HOH HOH . OA 8 HOH F 13 213 213 HOH HOH . OA 8 HOH F 14 214 214 HOH HOH . OA 8 HOH F 15 215 215 HOH HOH . OA 8 HOH F 16 216 216 HOH HOH . OA 8 HOH F 17 217 217 HOH HOH . OA 8 HOH F 18 218 218 HOH HOH . OA 8 HOH F 19 219 219 HOH HOH . OA 8 HOH F 20 220 220 HOH HOH . OA 8 HOH F 21 221 221 HOH HOH . OA 8 HOH F 22 222 222 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id HA _atom_site.label_entity_id 4 _atom_site.Cartn_x 3.864 _atom_site.Cartn_y 33.689 _atom_site.Cartn_z 21.221 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 58.92 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 105 _atom_site.auth_asym_id F _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #