data_3WOC # _model_server_result.job_id nhW1MtBm92Cioa9jq7PYYg _model_server_result.datetime_utc '2024-11-22 18:09:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3woc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":207}' # _entry.id 3WOC # _exptl.entry_id 3WOC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.105 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIETHYLENE DIOXIDE' _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.3 _cell.angle_gamma 90 _cell.entry_id 3WOC _cell.length_a 134.483 _cell.length_b 77.848 _cell.length_c 87.187 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WOC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 ? monomeric 1 author_defined_assembly 6 PISA dimeric 2 software_defined_assembly 7 PISA dimeric 2 software_defined_assembly 8 PISA dimeric 2 software_defined_assembly 9 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G,H,I,J,K,L,M,N,O,P,EA 1 1 B,Q,R,S,T,FA 2 1 C,U,GA 3 1 D,V,W,X,HA 4 1 E,Y,Z,AA,IA 5 1 F,BA,CA,DA,JA 6 1 A,E,G,H,I,J,K,L,M,N,O,P,Y,Z,AA,EA,IA 7 1 B,Q,R,S,T,FA 8 1 D,V,W,X,HA 8 2 C,F,U,BA,CA,DA,GA,JA 9 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 1.978041 0 -87.164559 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 R N N ? 3 S N N ? 3 W N N ? 3 X N N ? 3 Z N N ? 3 AA N N ? 3 CA N N ? 3 DA N N # _chem_comp.formula 'C4 H8 O2' _chem_comp.formula_weight 88.105 _chem_comp.id DIO _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIETHYLENE DIOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C1' DIO sing 70 n n C1 O1 DIO sing 71 n n C1 H11 DIO sing 72 n n C1 H12 DIO sing 73 n n C2 C2' DIO sing 74 n n C2 O1 DIO sing 75 n n C2 H21 DIO sing 76 n n C2 H22 DIO sing 77 n n C1' O1' DIO sing 78 n n C1' "H1'1" DIO sing 79 n n C1' "H1'2" DIO sing 80 n n C2' O1' DIO sing 81 n n C2' "H2'1" DIO sing 82 n n C2' "H2'2" DIO sing 83 n n # _atom_sites.entry_id 3WOC _atom_sites.fract_transf_matrix[1][1] 0.007436 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000168 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012846 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011473 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 SO4 A 1 201 1 SO4 SO4 . H 3 DIO A 1 202 1800 DIO DIO . I 3 DIO A 1 203 1900 DIO DIO . J 3 DIO A 1 204 2100 DIO DIO . K 3 DIO A 1 205 2200 DIO DIO . L 3 DIO A 1 206 2300 DIO DIO . M 3 DIO A 1 207 2500 DIO DIO . N 3 DIO A 1 208 2900 DIO DIO . O 3 DIO A 1 209 3000 DIO DIO . P 4 GOL A 1 210 100 GOL GOL . Q 2 SO4 B 1 201 3 SO4 SO4 . R 3 DIO B 1 202 2600 DIO DIO . S 3 DIO B 1 203 3200 DIO DIO . T 4 GOL B 1 204 101 GOL GOL . U 2 SO4 C 1 201 5 SO4 SO4 . V 2 SO4 D 1 201 2 SO4 SO4 . W 3 DIO D 1 202 1400 DIO DIO . X 3 DIO D 1 203 2700 DIO DIO . Y 2 SO4 E 1 201 4 SO4 SO4 . Z 3 DIO E 1 202 1300 DIO DIO . AA 3 DIO E 1 203 3100 DIO DIO . BA 2 SO4 F 1 201 135 SO4 SO4 . CA 3 DIO F 1 202 1700 DIO DIO . DA 3 DIO F 1 203 2000 DIO DIO . EA 5 HOH A 1 301 4 HOH HOH . EA 5 HOH A 2 302 5 HOH HOH . EA 5 HOH A 3 303 6 HOH HOH . EA 5 HOH A 4 304 7 HOH HOH . EA 5 HOH A 5 305 9 HOH HOH . EA 5 HOH A 6 306 10 HOH HOH . EA 5 HOH A 7 307 11 HOH HOH . EA 5 HOH A 8 308 54 HOH HOH . EA 5 HOH A 9 309 57 HOH HOH . EA 5 HOH A 10 310 91 HOH HOH . EA 5 HOH A 11 311 97 HOH HOH . EA 5 HOH A 12 312 141 HOH HOH . EA 5 HOH A 13 313 145 HOH HOH . EA 5 HOH A 14 314 146 HOH HOH . EA 5 HOH A 15 315 147 HOH HOH . EA 5 HOH A 16 316 148 HOH HOH . EA 5 HOH A 17 317 149 HOH HOH . EA 5 HOH A 18 318 150 HOH HOH . EA 5 HOH A 19 319 151 HOH HOH . EA 5 HOH A 20 320 152 HOH HOH . EA 5 HOH A 21 321 153 HOH HOH . EA 5 HOH A 22 322 154 HOH HOH . EA 5 HOH A 23 323 155 HOH HOH . EA 5 HOH A 24 324 197 HOH HOH . EA 5 HOH A 25 325 201 HOH HOH . EA 5 HOH A 26 326 213 HOH HOH . EA 5 HOH A 27 327 216 HOH HOH . EA 5 HOH A 28 328 217 HOH HOH . EA 5 HOH A 29 329 218 HOH HOH . EA 5 HOH A 30 330 219 HOH HOH . EA 5 HOH A 31 331 221 HOH HOH . EA 5 HOH A 32 332 222 HOH HOH . EA 5 HOH A 33 333 227 HOH HOH . EA 5 HOH A 34 334 229 HOH HOH . EA 5 HOH A 35 335 230 HOH HOH . EA 5 HOH A 36 336 241 HOH HOH . EA 5 HOH A 37 337 254 HOH HOH . EA 5 HOH A 38 338 287 HOH HOH . EA 5 HOH A 39 339 322 HOH HOH . EA 5 HOH A 40 340 323 HOH HOH . EA 5 HOH A 41 341 324 HOH HOH . EA 5 HOH A 42 342 325 HOH HOH . EA 5 HOH A 43 343 331 HOH HOH . EA 5 HOH A 44 344 341 HOH HOH . EA 5 HOH A 45 345 342 HOH HOH . FA 5 HOH B 1 301 8 HOH HOH . FA 5 HOH B 2 302 19 HOH HOH . FA 5 HOH B 3 303 21 HOH HOH . FA 5 HOH B 4 304 23 HOH HOH . FA 5 HOH B 5 305 24 HOH HOH . FA 5 HOH B 6 306 25 HOH HOH . FA 5 HOH B 7 307 26 HOH HOH . FA 5 HOH B 8 308 27 HOH HOH . FA 5 HOH B 9 309 28 HOH HOH . FA 5 HOH B 10 310 29 HOH HOH . FA 5 HOH B 11 311 30 HOH HOH . FA 5 HOH B 12 312 31 HOH HOH . FA 5 HOH B 13 313 32 HOH HOH . FA 5 HOH B 14 314 33 HOH HOH . FA 5 HOH B 15 315 34 HOH HOH . FA 5 HOH B 16 316 35 HOH HOH . FA 5 HOH B 17 317 36 HOH HOH . FA 5 HOH B 18 318 55 HOH HOH . FA 5 HOH B 19 319 158 HOH HOH . FA 5 HOH B 20 320 159 HOH HOH . FA 5 HOH B 21 321 160 HOH HOH . FA 5 HOH B 22 322 161 HOH HOH . FA 5 HOH B 23 323 163 HOH HOH . FA 5 HOH B 24 324 164 HOH HOH . FA 5 HOH B 25 325 165 HOH HOH . FA 5 HOH B 26 326 182 HOH HOH . FA 5 HOH B 27 327 203 HOH HOH . FA 5 HOH B 28 328 204 HOH HOH . FA 5 HOH B 29 329 223 HOH HOH . FA 5 HOH B 30 330 224 HOH HOH . FA 5 HOH B 31 331 231 HOH HOH . FA 5 HOH B 32 332 232 HOH HOH . FA 5 HOH B 33 333 281 HOH HOH . FA 5 HOH B 34 334 282 HOH HOH . FA 5 HOH B 35 335 283 HOH HOH . FA 5 HOH B 36 336 326 HOH HOH . FA 5 HOH B 37 337 333 HOH HOH . FA 5 HOH B 38 338 335 HOH HOH . FA 5 HOH B 39 339 358 HOH HOH . GA 5 HOH C 1 301 39 HOH HOH . GA 5 HOH C 2 302 40 HOH HOH . GA 5 HOH C 3 303 41 HOH HOH . GA 5 HOH C 4 304 42 HOH HOH . GA 5 HOH C 5 305 43 HOH HOH . GA 5 HOH C 6 306 48 HOH HOH . GA 5 HOH C 7 307 49 HOH HOH . GA 5 HOH C 8 308 51 HOH HOH . GA 5 HOH C 9 309 52 HOH HOH . GA 5 HOH C 10 310 81 HOH HOH . GA 5 HOH C 11 311 82 HOH HOH . GA 5 HOH C 12 312 83 HOH HOH . GA 5 HOH C 13 313 86 HOH HOH . GA 5 HOH C 14 314 87 HOH HOH . GA 5 HOH C 15 315 88 HOH HOH . GA 5 HOH C 16 316 89 HOH HOH . GA 5 HOH C 17 317 92 HOH HOH . GA 5 HOH C 18 318 93 HOH HOH . GA 5 HOH C 19 319 94 HOH HOH . GA 5 HOH C 20 320 95 HOH HOH . GA 5 HOH C 21 321 96 HOH HOH . GA 5 HOH C 22 322 98 HOH HOH . GA 5 HOH C 23 323 99 HOH HOH . GA 5 HOH C 24 324 100 HOH HOH . GA 5 HOH C 25 325 129 HOH HOH . GA 5 HOH C 26 326 206 HOH HOH . GA 5 HOH C 27 327 207 HOH HOH . GA 5 HOH C 28 328 208 HOH HOH . GA 5 HOH C 29 329 210 HOH HOH . GA 5 HOH C 30 330 211 HOH HOH . GA 5 HOH C 31 331 225 HOH HOH . GA 5 HOH C 32 332 226 HOH HOH . GA 5 HOH C 33 333 233 HOH HOH . GA 5 HOH C 34 334 250 HOH HOH . GA 5 HOH C 35 335 251 HOH HOH . GA 5 HOH C 36 336 253 HOH HOH . GA 5 HOH C 37 337 255 HOH HOH . GA 5 HOH C 38 338 256 HOH HOH . GA 5 HOH C 39 339 257 HOH HOH . GA 5 HOH C 40 340 258 HOH HOH . GA 5 HOH C 41 341 284 HOH HOH . GA 5 HOH C 42 342 285 HOH HOH . GA 5 HOH C 43 343 286 HOH HOH . GA 5 HOH C 44 344 310 HOH HOH . GA 5 HOH C 45 345 316 HOH HOH . GA 5 HOH C 46 346 327 HOH HOH . GA 5 HOH C 47 347 328 HOH HOH . GA 5 HOH C 48 348 329 HOH HOH . GA 5 HOH C 49 349 336 HOH HOH . GA 5 HOH C 50 350 343 HOH HOH . GA 5 HOH C 51 351 360 HOH HOH . GA 5 HOH C 52 352 101 HOH HOH . GA 5 HOH C 53 353 102 HOH HOH . HA 5 HOH D 1 301 302 HOH HOH . HA 5 HOH D 2 302 56 HOH HOH . HA 5 HOH D 3 303 105 HOH HOH . HA 5 HOH D 4 304 107 HOH HOH . HA 5 HOH D 5 305 109 HOH HOH . HA 5 HOH D 6 306 110 HOH HOH . HA 5 HOH D 7 307 111 HOH HOH . HA 5 HOH D 8 308 112 HOH HOH . HA 5 HOH D 9 309 113 HOH HOH . HA 5 HOH D 10 310 114 HOH HOH . HA 5 HOH D 11 311 115 HOH HOH . HA 5 HOH D 12 312 117 HOH HOH . HA 5 HOH D 13 313 118 HOH HOH . HA 5 HOH D 14 314 119 HOH HOH . HA 5 HOH D 15 315 171 HOH HOH . HA 5 HOH D 16 316 173 HOH HOH . HA 5 HOH D 17 317 175 HOH HOH . HA 5 HOH D 18 318 176 HOH HOH . HA 5 HOH D 19 319 177 HOH HOH . HA 5 HOH D 20 320 178 HOH HOH . HA 5 HOH D 21 321 234 HOH HOH . HA 5 HOH D 22 322 248 HOH HOH . HA 5 HOH D 23 323 288 HOH HOH . HA 5 HOH D 24 324 289 HOH HOH . HA 5 HOH D 25 325 290 HOH HOH . HA 5 HOH D 26 326 303 HOH HOH . HA 5 HOH D 27 327 304 HOH HOH . HA 5 HOH D 28 328 305 HOH HOH . HA 5 HOH D 29 329 311 HOH HOH . HA 5 HOH D 30 330 337 HOH HOH . HA 5 HOH D 31 331 338 HOH HOH . HA 5 HOH D 32 332 344 HOH HOH . HA 5 HOH D 33 333 345 HOH HOH . HA 5 HOH D 34 334 346 HOH HOH . HA 5 HOH D 35 335 347 HOH HOH . HA 5 HOH D 36 336 356 HOH HOH . IA 5 HOH E 1 301 1 HOH HOH . IA 5 HOH E 2 302 2 HOH HOH . IA 5 HOH E 3 303 22 HOH HOH . IA 5 HOH E 4 304 120 HOH HOH . IA 5 HOH E 5 305 122 HOH HOH . IA 5 HOH E 6 306 123 HOH HOH . IA 5 HOH E 7 307 124 HOH HOH . IA 5 HOH E 8 308 127 HOH HOH . IA 5 HOH E 9 309 143 HOH HOH . IA 5 HOH E 10 310 144 HOH HOH . IA 5 HOH E 11 311 162 HOH HOH . IA 5 HOH E 12 312 166 HOH HOH . IA 5 HOH E 13 313 179 HOH HOH . IA 5 HOH E 14 314 181 HOH HOH . IA 5 HOH E 15 315 183 HOH HOH . IA 5 HOH E 16 316 184 HOH HOH . IA 5 HOH E 17 317 185 HOH HOH . IA 5 HOH E 18 318 186 HOH HOH . IA 5 HOH E 19 319 215 HOH HOH . IA 5 HOH E 20 320 235 HOH HOH . IA 5 HOH E 21 321 236 HOH HOH . IA 5 HOH E 22 322 237 HOH HOH . IA 5 HOH E 23 323 259 HOH HOH . IA 5 HOH E 24 324 291 HOH HOH . IA 5 HOH E 25 325 292 HOH HOH . IA 5 HOH E 26 326 294 HOH HOH . IA 5 HOH E 27 327 295 HOH HOH . IA 5 HOH E 28 328 312 HOH HOH . IA 5 HOH E 29 329 313 HOH HOH . IA 5 HOH E 30 330 314 HOH HOH . IA 5 HOH E 31 331 315 HOH HOH . IA 5 HOH E 32 332 317 HOH HOH . IA 5 HOH E 33 333 321 HOH HOH . IA 5 HOH E 34 334 332 HOH HOH . IA 5 HOH E 35 335 339 HOH HOH . IA 5 HOH E 36 336 348 HOH HOH . IA 5 HOH E 37 337 349 HOH HOH . IA 5 HOH E 38 338 350 HOH HOH . IA 5 HOH E 39 339 351 HOH HOH . IA 5 HOH E 40 340 357 HOH HOH . IA 5 HOH E 41 341 359 HOH HOH . JA 5 HOH F 1 301 38 HOH HOH . JA 5 HOH F 2 302 84 HOH HOH . JA 5 HOH F 3 303 85 HOH HOH . JA 5 HOH F 4 304 128 HOH HOH . JA 5 HOH F 5 305 130 HOH HOH . JA 5 HOH F 6 306 132 HOH HOH . JA 5 HOH F 7 307 190 HOH HOH . JA 5 HOH F 8 308 191 HOH HOH . JA 5 HOH F 9 309 192 HOH HOH . JA 5 HOH F 10 310 193 HOH HOH . JA 5 HOH F 11 311 194 HOH HOH . JA 5 HOH F 12 312 195 HOH HOH . JA 5 HOH F 13 313 196 HOH HOH . JA 5 HOH F 14 314 205 HOH HOH . JA 5 HOH F 15 315 238 HOH HOH . JA 5 HOH F 16 316 239 HOH HOH . JA 5 HOH F 17 317 249 HOH HOH . JA 5 HOH F 18 318 260 HOH HOH . JA 5 HOH F 19 319 261 HOH HOH . JA 5 HOH F 20 320 262 HOH HOH . JA 5 HOH F 21 321 263 HOH HOH . JA 5 HOH F 22 322 264 HOH HOH . JA 5 HOH F 23 323 265 HOH HOH . JA 5 HOH F 24 324 268 HOH HOH . JA 5 HOH F 25 325 296 HOH HOH . JA 5 HOH F 26 326 297 HOH HOH . JA 5 HOH F 27 327 298 HOH HOH . JA 5 HOH F 28 328 299 HOH HOH . JA 5 HOH F 29 329 300 HOH HOH . JA 5 HOH F 30 330 306 HOH HOH . JA 5 HOH F 31 331 307 HOH HOH . JA 5 HOH F 32 332 308 HOH HOH . JA 5 HOH F 33 333 309 HOH HOH . JA 5 HOH F 34 334 318 HOH HOH . JA 5 HOH F 35 335 319 HOH HOH . JA 5 HOH F 36 336 320 HOH HOH . JA 5 HOH F 37 337 330 HOH HOH . JA 5 HOH F 38 338 340 HOH HOH . JA 5 HOH F 39 339 352 HOH HOH . JA 5 HOH F 40 340 354 HOH HOH . JA 5 HOH F 41 341 355 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DIO . . . M 3 6.053 -0.313 -52.26 1 57.55 ? C1 DIO 207 A 1 HETATM 2 C C2 DIO . . . M 3 5.511 0.601 -50.095 1 57.5 ? C2 DIO 207 A 1 HETATM 3 C C1' DIO . . . M 3 6.288 1.092 -52.81 1 57.6 ? C1' DIO 207 A 1 HETATM 4 C C2' DIO . . . M 3 5.845 1.989 -50.634 1 57.59 ? C2' DIO 207 A 1 HETATM 5 O O1 DIO . . . M 3 5.132 -0.272 -51.164 1 57.56 ? O1 DIO 207 A 1 HETATM 6 O O1' DIO . . . M 3 5.561 2.049 -52.034 1 57.66 ? O1' DIO 207 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #