data_3WOG # _model_server_result.job_id jpTi5RZ5i4WkFoXqdJAsyg _model_server_result.datetime_utc '2024-11-15 05:35:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wog # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 3WOG # _exptl.entry_id 3WOG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WOG _cell.length_a 76.78 _cell.length_b 195.481 _cell.length_c 97.829 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WOG _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -48.9145 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 MAN _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C MAN 1 C 1 MAN A 3002 MAN 2 n C NAG 2 C 2 NAG A 3003 NAG 2 n D MAN 1 D 1 MAN B 3002 MAN 2 n D NAG 2 D 2 NAG B 3003 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 12 A ASN 33 1_555 E C1 NAG . A NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 B ND2 ASN 12 B ASN 33 1_555 H C1 NAG . B NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 C O2 MAN . C MAN 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale4 D O2 MAN . D MAN 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? metalc ? metalc1 A OE2 GLU 124 A GLU 145 1_555 F MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc2 A OD2 ASP 126 A ASP 147 1_555 F MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc3 A OD1 ASP 126 A ASP 147 1_555 G CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc4 A OD2 ASP 126 A ASP 147 1_555 G CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc5 A O LEU 128 A LEU 149 1_555 G CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc6 A OD1 ASN 130 A ASN 151 1_555 G CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc7 A OD1 ASP 134 A ASP 155 1_555 F MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc8 A OD2 ASP 134 A ASP 155 1_555 G CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc9 A NE2 HIS 139 A HIS 160 1_555 F MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc10 F MN MN . A MN 1002 1_555 K O HOH . A HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc11 F MN MN . A MN 1002 1_555 K O HOH . A HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? metalc ? metalc12 G CA CA . A CA 1003 1_555 K O HOH . A HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc13 G CA CA . A CA 1003 1_555 K O HOH . A HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc14 B OE2 GLU 124 B GLU 145 1_555 I MN MN . B MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc15 B OD2 ASP 126 B ASP 147 1_555 I MN MN . B MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc16 B OD1 ASP 126 B ASP 147 1_555 J CA CA . B CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc17 B OD2 ASP 126 B ASP 147 1_555 J CA CA . B CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc18 B O LEU 128 B LEU 149 1_555 J CA CA . B CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc19 B OD1 ASN 130 B ASN 151 1_555 J CA CA . B CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc20 B OD1 ASP 134 B ASP 155 1_555 I MN MN . B MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc21 B OD2 ASP 134 B ASP 155 1_555 J CA CA . B CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc22 B NE2 HIS 139 B HIS 160 1_555 I MN MN . B MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc23 I MN MN . B MN 1002 1_555 L O HOH . B HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc24 I MN MN . B MN 1002 1_555 L O HOH . B HOH 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc25 J CA CA . B CA 1003 1_555 L O HOH . B HOH 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc26 J CA CA . B CA 1003 1_555 L O HOH . B HOH 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 229 n n C1 O1 NAG sing 230 n n C1 O5 NAG sing 231 n n C1 H1 NAG sing 232 n n C2 C3 NAG sing 233 n n C2 N2 NAG sing 234 n n C2 H2 NAG sing 235 n n C3 C4 NAG sing 236 n n C3 O3 NAG sing 237 n n C3 H3 NAG sing 238 n n C4 C5 NAG sing 239 n n C4 O4 NAG sing 240 n n C4 H4 NAG sing 241 n n C5 C6 NAG sing 242 n n C5 O5 NAG sing 243 n n C5 H5 NAG sing 244 n n C6 O6 NAG sing 245 n n C6 H61 NAG sing 246 n n C6 H62 NAG sing 247 n n C7 C8 NAG sing 248 n n C7 N2 NAG sing 249 n n C7 O7 NAG doub 250 n n C8 H81 NAG sing 251 n n C8 H82 NAG sing 252 n n C8 H83 NAG sing 253 n n N2 HN2 NAG sing 254 n n O1 HO1 NAG sing 255 n n O3 HO3 NAG sing 256 n n O4 HO4 NAG sing 257 n n O6 HO6 NAG sing 258 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3WOG _atom_sites.fract_transf_matrix[1][1] 0.013024 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005116 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010222 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 1001 1001 NAG NAG . F 4 MN A 1 1002 2001 MN MN . G 5 CA A 1 1003 2002 CA CA . H 3 NAG B 1 1001 1001 NAG NAG . I 4 MN B 1 1002 2001 MN MN . J 5 CA B 1 1003 2002 CA CA . K 6 HOH A 1 1101 1 HOH HOH . K 6 HOH A 2 1102 2 HOH HOH . K 6 HOH A 3 1103 3 HOH HOH . K 6 HOH A 4 1104 4 HOH HOH . K 6 HOH A 5 1105 5 HOH HOH . K 6 HOH A 6 1106 6 HOH HOH . K 6 HOH A 7 1107 7 HOH HOH . K 6 HOH A 8 1108 8 HOH HOH . K 6 HOH A 9 1109 9 HOH HOH . K 6 HOH A 10 1110 10 HOH HOH . K 6 HOH A 11 1111 11 HOH HOH . K 6 HOH A 12 1112 12 HOH HOH . K 6 HOH A 13 1113 13 HOH HOH . K 6 HOH A 14 1114 14 HOH HOH . K 6 HOH A 15 1115 15 HOH HOH . K 6 HOH A 16 1116 16 HOH HOH . K 6 HOH A 17 1117 17 HOH HOH . K 6 HOH A 18 1118 18 HOH HOH . K 6 HOH A 19 1119 19 HOH HOH . K 6 HOH A 20 1120 20 HOH HOH . K 6 HOH A 21 1121 21 HOH HOH . K 6 HOH A 22 1122 22 HOH HOH . K 6 HOH A 23 1123 23 HOH HOH . K 6 HOH A 24 1124 24 HOH HOH . K 6 HOH A 25 1125 25 HOH HOH . K 6 HOH A 26 1126 26 HOH HOH . K 6 HOH A 27 1127 27 HOH HOH . K 6 HOH A 28 1128 28 HOH HOH . K 6 HOH A 29 1129 29 HOH HOH . K 6 HOH A 30 1130 30 HOH HOH . K 6 HOH A 31 1131 31 HOH HOH . K 6 HOH A 32 1132 32 HOH HOH . K 6 HOH A 33 1133 33 HOH HOH . K 6 HOH A 34 1134 34 HOH HOH . K 6 HOH A 35 1135 35 HOH HOH . K 6 HOH A 36 1136 36 HOH HOH . K 6 HOH A 37 1137 37 HOH HOH . K 6 HOH A 38 1138 38 HOH HOH . K 6 HOH A 39 1139 39 HOH HOH . K 6 HOH A 40 1140 40 HOH HOH . K 6 HOH A 41 1141 41 HOH HOH . K 6 HOH A 42 1142 43 HOH HOH . K 6 HOH A 43 1143 46 HOH HOH . K 6 HOH A 44 1144 47 HOH HOH . K 6 HOH A 45 1145 48 HOH HOH . L 6 HOH B 1 1101 42 HOH HOH . L 6 HOH B 2 1102 44 HOH HOH . L 6 HOH B 3 1103 45 HOH HOH . L 6 HOH B 4 1104 49 HOH HOH . L 6 HOH B 5 1105 50 HOH HOH . L 6 HOH B 6 1106 51 HOH HOH . L 6 HOH B 7 1107 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 3 11.608 -43.049 -14.401 1 37.66 ? C1 NAG 1001 A 1 HETATM 2 C C2 NAG . . . E 3 12.465 -42.714 -13.173 1 44.26 ? C2 NAG 1001 A 1 HETATM 3 C C3 NAG . . . E 3 13.058 -41.315 -13.379 1 45.53 ? C3 NAG 1001 A 1 HETATM 4 C C4 NAG . . . E 3 13.988 -41.34 -14.596 1 44.06 ? C4 NAG 1001 A 1 HETATM 5 C C5 NAG . . . E 3 13.303 -41.991 -15.812 1 42.73 ? C5 NAG 1001 A 1 HETATM 6 C C6 NAG . . . E 3 14.415 -42.505 -16.713 1 42 ? C6 NAG 1001 A 1 HETATM 7 C C7 NAG . . . E 3 11.757 -43.967 -11.187 1 46.93 ? C7 NAG 1001 A 1 HETATM 8 C C8 NAG . . . E 3 10.981 -43.944 -9.9 1 47.63 ? C8 NAG 1001 A 1 HETATM 9 N N2 NAG . . . E 3 11.748 -42.832 -11.902 1 46.94 ? N2 NAG 1001 A 1 HETATM 10 O O3 NAG . . . E 3 13.778 -40.871 -12.246 1 48.04 ? O3 NAG 1001 A 1 HETATM 11 O O4 NAG . . . E 3 14.44 -40.028 -14.9 1 42.97 ? O4 NAG 1001 A 1 HETATM 12 O O5 NAG . . . E 3 12.453 -43.113 -15.543 1 38.71 ? O5 NAG 1001 A 1 HETATM 13 O O6 NAG . . . E 3 13.94 -42.477 -18.024 1 43.16 ? O6 NAG 1001 A 1 HETATM 14 O O7 NAG . . . E 3 12.337 -44.997 -11.536 1 45.78 ? O7 NAG 1001 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #