data_3WPG # _model_server_result.job_id XMmjKsdyago72VqmxewTOw _model_server_result.datetime_utc '2024-10-18 12:19:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wpg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":902}' # _entry.id 3WPG # _exptl.entry_id 3WPG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WPG _cell.length_a 71.23 _cell.length_b 123.86 _cell.length_c 130.44 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WPG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 35 1_555 A SG CYS 24 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 77 A CYS 98 1_555 A SG CYS 89 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 157 A CYS 178 1_555 A SG CYS 163 A CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 234 A CYS 255 1_555 A SG CYS 247 A CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 237 A CYS 258 1_555 A SG CYS 244 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 A SG CYS 450 A CYS 471 1_555 A SG CYS 480 A CYS 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 A SG CYS 744 A CYS 765 1_555 A SG CYS 770 A CYS 791 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 A SG CYS 746 A CYS 767 1_555 A SG CYS 789 A CYS 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 711 A ASN 732 1_555 C C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.508 ? hydrog WATSON-CRICK hydrog1 B N3 DC 1 B DC 1 1_555 B N1 DG 9 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 DC 1 B DC 1 1_555 B O6 DG 9 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 DC 1 B DC 1 1_555 B N2 DG 9 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N3 DC 2 B DC 2 1_555 B N1 DG 8 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N4 DC 2 B DC 2 1_555 B O6 DG 8 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O2 DC 2 B DC 2 1_555 B N2 DG 8 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_16_PAIR hydrog7 B N3 DT 3 B DT 3 1_555 B O4 DT 7 B DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_16_PAIR hydrog8 B O2 DT 3 B DT 3 1_555 B N3 DT 7 B DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3WPG _atom_sites.fract_transf_matrix[1][1] 0.014039 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008074 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 901 1 NAG NAG . D 4 SO4 A 1 902 1 SO4 SO4 . E 4 SO4 A 1 903 3 SO4 SO4 . F 4 SO4 A 1 904 4 SO4 SO4 . G 4 SO4 A 1 905 5 SO4 SO4 . H 4 SO4 B 1 101 2 SO4 SO4 . I 5 HOH A 1 1001 1 HOH HOH . I 5 HOH A 2 1002 2 HOH HOH . I 5 HOH A 3 1003 3 HOH HOH . I 5 HOH A 4 1004 4 HOH HOH . I 5 HOH A 5 1005 5 HOH HOH . I 5 HOH A 6 1006 6 HOH HOH . I 5 HOH A 7 1007 7 HOH HOH . I 5 HOH A 8 1008 8 HOH HOH . I 5 HOH A 9 1009 9 HOH HOH . I 5 HOH A 10 1010 10 HOH HOH . I 5 HOH A 11 1011 11 HOH HOH . I 5 HOH A 12 1012 12 HOH HOH . I 5 HOH A 13 1013 13 HOH HOH . I 5 HOH A 14 1014 14 HOH HOH . I 5 HOH A 15 1015 15 HOH HOH . I 5 HOH A 16 1016 16 HOH HOH . I 5 HOH A 17 1017 17 HOH HOH . I 5 HOH A 18 1018 20 HOH HOH . I 5 HOH A 19 1019 21 HOH HOH . I 5 HOH A 20 1020 22 HOH HOH . I 5 HOH A 21 1021 24 HOH HOH . I 5 HOH A 22 1022 25 HOH HOH . I 5 HOH A 23 1023 26 HOH HOH . I 5 HOH A 24 1024 27 HOH HOH . I 5 HOH A 25 1025 28 HOH HOH . I 5 HOH A 26 1026 29 HOH HOH . I 5 HOH A 27 1027 30 HOH HOH . I 5 HOH A 28 1028 31 HOH HOH . I 5 HOH A 29 1029 32 HOH HOH . I 5 HOH A 30 1030 33 HOH HOH . I 5 HOH A 31 1031 35 HOH HOH . I 5 HOH A 32 1032 37 HOH HOH . I 5 HOH A 33 1033 38 HOH HOH . I 5 HOH A 34 1034 39 HOH HOH . I 5 HOH A 35 1035 40 HOH HOH . I 5 HOH A 36 1036 41 HOH HOH . I 5 HOH A 37 1037 42 HOH HOH . I 5 HOH A 38 1038 43 HOH HOH . I 5 HOH A 39 1039 44 HOH HOH . I 5 HOH A 40 1040 45 HOH HOH . I 5 HOH A 41 1041 46 HOH HOH . I 5 HOH A 42 1042 47 HOH HOH . I 5 HOH A 43 1043 48 HOH HOH . I 5 HOH A 44 1044 49 HOH HOH . I 5 HOH A 45 1045 50 HOH HOH . I 5 HOH A 46 1046 51 HOH HOH . I 5 HOH A 47 1047 52 HOH HOH . I 5 HOH A 48 1048 53 HOH HOH . I 5 HOH A 49 1049 54 HOH HOH . I 5 HOH A 50 1050 55 HOH HOH . I 5 HOH A 51 1051 56 HOH HOH . I 5 HOH A 52 1052 57 HOH HOH . I 5 HOH A 53 1053 58 HOH HOH . I 5 HOH A 54 1054 59 HOH HOH . I 5 HOH A 55 1055 60 HOH HOH . I 5 HOH A 56 1056 61 HOH HOH . I 5 HOH A 57 1057 62 HOH HOH . I 5 HOH A 58 1058 63 HOH HOH . I 5 HOH A 59 1059 64 HOH HOH . I 5 HOH A 60 1060 65 HOH HOH . I 5 HOH A 61 1061 66 HOH HOH . I 5 HOH A 62 1062 67 HOH HOH . I 5 HOH A 63 1063 68 HOH HOH . I 5 HOH A 64 1064 69 HOH HOH . I 5 HOH A 65 1065 74 HOH HOH . I 5 HOH A 66 1066 75 HOH HOH . I 5 HOH A 67 1067 76 HOH HOH . I 5 HOH A 68 1068 77 HOH HOH . J 5 HOH B 1 201 18 HOH HOH . J 5 HOH B 2 202 19 HOH HOH . J 5 HOH B 3 203 23 HOH HOH . J 5 HOH B 4 204 34 HOH HOH . J 5 HOH B 5 205 36 HOH HOH . J 5 HOH B 6 206 70 HOH HOH . J 5 HOH B 7 207 71 HOH HOH . J 5 HOH B 8 208 72 HOH HOH . J 5 HOH B 9 209 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 4 -24.25 2.261 -0.178 1 140.35 ? S SO4 902 A 1 HETATM 2 O O1 SO4 . . . D 4 -23.262 1.383 0.439 1 139.19 ? O1 SO4 902 A 1 HETATM 3 O O2 SO4 . . . D 4 -23.598 3.487 -0.622 1 138.09 ? O2 SO4 902 A 1 HETATM 4 O O3 SO4 . . . D 4 -24.852 1.592 -1.327 1 139.32 ? O3 SO4 902 A 1 HETATM 5 O O4 SO4 . . . D 4 -25.292 2.58 0.793 1 142.93 ? O4 SO4 902 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #