data_3WPK # _model_server_result.job_id poQkH1hmWCqPzBMPam-buw _model_server_result.datetime_utc '2024-11-25 14:33:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wpk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 3WPK # _exptl.entry_id 3WPK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PLATINUM (IV) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3WPK _cell.length_a 79.175 _cell.length_b 79.175 _cell.length_c 37.886 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WPK _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 B PT PT4 . A PT4 301 1_555 D O HOH . A HOH 464 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? # _chem_comp.formula 'Pt 4' _chem_comp.formula_weight 195.078 _chem_comp.id PT4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PLATINUM (IV) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3WPK _atom_sites.fract_transf_matrix[1][1] 0.01263 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01263 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026395 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PT4 A 1 301 301 PT4 PT . C 2 PT4 A 1 302 302 PT4 PT . D 3 HOH A 1 401 130 HOH HOH . D 3 HOH A 2 402 131 HOH HOH . D 3 HOH A 3 403 132 HOH HOH . D 3 HOH A 4 404 133 HOH HOH . D 3 HOH A 5 405 134 HOH HOH . D 3 HOH A 6 406 135 HOH HOH . D 3 HOH A 7 407 136 HOH HOH . D 3 HOH A 8 408 137 HOH HOH . D 3 HOH A 9 409 138 HOH HOH . D 3 HOH A 10 410 139 HOH HOH . D 3 HOH A 11 411 140 HOH HOH . D 3 HOH A 12 412 141 HOH HOH . D 3 HOH A 13 413 142 HOH HOH . D 3 HOH A 14 414 143 HOH HOH . D 3 HOH A 15 415 144 HOH HOH . D 3 HOH A 16 416 145 HOH HOH . D 3 HOH A 17 417 146 HOH HOH . D 3 HOH A 18 418 147 HOH HOH . D 3 HOH A 19 419 148 HOH HOH . D 3 HOH A 20 420 149 HOH HOH . D 3 HOH A 21 421 150 HOH HOH . D 3 HOH A 22 422 151 HOH HOH . D 3 HOH A 23 423 152 HOH HOH . D 3 HOH A 24 424 153 HOH HOH . D 3 HOH A 25 425 154 HOH HOH . D 3 HOH A 26 426 155 HOH HOH . D 3 HOH A 27 427 156 HOH HOH . D 3 HOH A 28 428 157 HOH HOH . D 3 HOH A 29 429 158 HOH HOH . D 3 HOH A 30 430 159 HOH HOH . D 3 HOH A 31 431 160 HOH HOH . D 3 HOH A 32 432 161 HOH HOH . D 3 HOH A 33 433 162 HOH HOH . D 3 HOH A 34 434 163 HOH HOH . D 3 HOH A 35 435 166 HOH HOH . D 3 HOH A 36 436 167 HOH HOH . D 3 HOH A 37 437 168 HOH HOH . D 3 HOH A 38 438 170 HOH HOH . D 3 HOH A 39 439 171 HOH HOH . D 3 HOH A 40 440 172 HOH HOH . D 3 HOH A 41 441 173 HOH HOH . D 3 HOH A 42 442 175 HOH HOH . D 3 HOH A 43 443 176 HOH HOH . D 3 HOH A 44 444 178 HOH HOH . D 3 HOH A 45 445 181 HOH HOH . D 3 HOH A 46 446 183 HOH HOH . D 3 HOH A 47 447 187 HOH HOH . D 3 HOH A 48 448 190 HOH HOH . D 3 HOH A 49 449 191 HOH HOH . D 3 HOH A 50 450 192 HOH HOH . D 3 HOH A 51 451 195 HOH HOH . D 3 HOH A 52 452 197 HOH HOH . D 3 HOH A 53 453 200 HOH HOH . D 3 HOH A 54 454 201 HOH HOH . D 3 HOH A 55 455 205 HOH HOH . D 3 HOH A 56 456 208 HOH HOH . D 3 HOH A 57 457 209 HOH HOH . D 3 HOH A 58 458 210 HOH HOH . D 3 HOH A 59 459 218 HOH HOH . D 3 HOH A 60 460 220 HOH HOH . D 3 HOH A 61 461 223 HOH HOH . D 3 HOH A 62 462 233 HOH HOH . D 3 HOH A 63 463 239 HOH HOH . D 3 HOH A 64 464 250 HOH HOH . D 3 HOH A 65 465 251 HOH HOH . D 3 HOH A 66 466 252 HOH HOH . D 3 HOH A 67 467 261 HOH HOH . D 3 HOH A 68 468 277 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol PT _atom_site.label_atom_id PT _atom_site.label_comp_id PT4 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 4.165 _atom_site.Cartn_y 6.168 _atom_site.Cartn_z 7.097 _atom_site.occupancy 0.22 _atom_site.B_iso_or_equiv 32.39 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id PT _atom_site.auth_comp_id PT4 _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #