data_3WQF
#
_model_server_result.job_id            7OER06bxd0jLS5Z1v1cRVQ 
_model_server_result.datetime_utc      '2024-10-25 20:23:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3wqf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    3WQF 
#
_exptl.entry_id    3WQF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3WQF 
_cell.length_a            157.844 
_cell.length_b            157.844 
_cell.length_c            157.86 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3WQF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 53 A LYS 43 1_555 C C4A PLP . A PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.536 ? 
covale ? covale2 B NZ LYS 53 B LYS 43 1_555 D C4A PLP . B PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
_atom_sites.entry_id                     3WQF 
_atom_sites.fract_transf_matrix[1][1]    0.006335 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006335 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006335 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLP A 1 401 401 PLP PLP . 
D 2 PLP B 1 401 401 PLP PLP . 
E 3 HOH A 1 501 1 HOH HOH . 
E 3 HOH A 2 502 2 HOH HOH . 
E 3 HOH A 3 503 3 HOH HOH . 
E 3 HOH A 4 504 4 HOH HOH . 
E 3 HOH A 5 505 5 HOH HOH . 
E 3 HOH A 6 506 7 HOH HOH . 
E 3 HOH A 7 507 10 HOH HOH . 
E 3 HOH A 8 508 15 HOH HOH . 
E 3 HOH A 9 509 18 HOH HOH . 
E 3 HOH A 10 510 19 HOH HOH . 
E 3 HOH A 11 511 20 HOH HOH . 
E 3 HOH A 12 512 23 HOH HOH . 
E 3 HOH A 13 513 29 HOH HOH . 
E 3 HOH A 14 514 30 HOH HOH . 
E 3 HOH A 15 515 33 HOH HOH . 
E 3 HOH A 16 516 35 HOH HOH . 
E 3 HOH A 17 517 37 HOH HOH . 
E 3 HOH A 18 518 40 HOH HOH . 
E 3 HOH A 19 519 41 HOH HOH . 
E 3 HOH A 20 520 42 HOH HOH . 
E 3 HOH A 21 521 43 HOH HOH . 
E 3 HOH A 22 522 47 HOH HOH . 
E 3 HOH A 23 523 48 HOH HOH . 
E 3 HOH A 24 524 49 HOH HOH . 
E 3 HOH A 25 525 60 HOH HOH . 
E 3 HOH A 26 526 61 HOH HOH . 
E 3 HOH A 27 527 64 HOH HOH . 
E 3 HOH A 28 528 65 HOH HOH . 
E 3 HOH A 29 529 67 HOH HOH . 
E 3 HOH A 30 530 68 HOH HOH . 
E 3 HOH A 31 531 70 HOH HOH . 
E 3 HOH A 32 532 71 HOH HOH . 
E 3 HOH A 33 533 75 HOH HOH . 
E 3 HOH A 34 534 76 HOH HOH . 
E 3 HOH A 35 535 77 HOH HOH . 
E 3 HOH A 36 536 78 HOH HOH . 
E 3 HOH A 37 537 79 HOH HOH . 
E 3 HOH A 38 538 81 HOH HOH . 
E 3 HOH A 39 539 83 HOH HOH . 
E 3 HOH A 40 540 86 HOH HOH . 
E 3 HOH A 41 541 87 HOH HOH . 
E 3 HOH A 42 542 88 HOH HOH . 
E 3 HOH A 43 543 89 HOH HOH . 
E 3 HOH A 44 544 90 HOH HOH . 
E 3 HOH A 45 545 91 HOH HOH . 
E 3 HOH A 46 546 92 HOH HOH . 
E 3 HOH A 47 547 94 HOH HOH . 
E 3 HOH A 48 548 95 HOH HOH . 
E 3 HOH A 49 549 96 HOH HOH . 
E 3 HOH A 50 550 97 HOH HOH . 
E 3 HOH A 51 551 98 HOH HOH . 
E 3 HOH A 52 552 99 HOH HOH . 
E 3 HOH A 53 553 100 HOH HOH . 
E 3 HOH A 54 554 101 HOH HOH . 
E 3 HOH A 55 555 103 HOH HOH . 
E 3 HOH A 56 556 104 HOH HOH . 
E 3 HOH A 57 557 105 HOH HOH . 
E 3 HOH A 58 558 106 HOH HOH . 
E 3 HOH A 59 559 108 HOH HOH . 
E 3 HOH A 60 560 109 HOH HOH . 
E 3 HOH A 61 561 110 HOH HOH . 
E 3 HOH A 62 562 111 HOH HOH . 
E 3 HOH A 63 563 114 HOH HOH . 
E 3 HOH A 64 564 115 HOH HOH . 
E 3 HOH A 65 565 117 HOH HOH . 
E 3 HOH A 66 566 120 HOH HOH . 
E 3 HOH A 67 567 121 HOH HOH . 
E 3 HOH A 68 568 124 HOH HOH . 
E 3 HOH A 69 569 127 HOH HOH . 
E 3 HOH A 70 570 128 HOH HOH . 
E 3 HOH A 71 571 129 HOH HOH . 
E 3 HOH A 72 572 130 HOH HOH . 
E 3 HOH A 73 573 131 HOH HOH . 
E 3 HOH A 74 574 132 HOH HOH . 
E 3 HOH A 75 575 133 HOH HOH . 
E 3 HOH A 76 576 135 HOH HOH . 
E 3 HOH A 77 577 137 HOH HOH . 
E 3 HOH A 78 578 138 HOH HOH . 
E 3 HOH A 79 579 140 HOH HOH . 
E 3 HOH A 80 580 141 HOH HOH . 
E 3 HOH A 81 581 142 HOH HOH . 
E 3 HOH A 82 582 144 HOH HOH . 
E 3 HOH A 83 583 150 HOH HOH . 
E 3 HOH A 84 584 153 HOH HOH . 
E 3 HOH A 85 585 154 HOH HOH . 
E 3 HOH A 86 586 156 HOH HOH . 
E 3 HOH A 87 587 158 HOH HOH . 
E 3 HOH A 88 588 162 HOH HOH . 
E 3 HOH A 89 589 165 HOH HOH . 
E 3 HOH A 90 590 166 HOH HOH . 
E 3 HOH A 91 591 171 HOH HOH . 
E 3 HOH A 92 592 173 HOH HOH . 
E 3 HOH A 93 593 175 HOH HOH . 
E 3 HOH A 94 594 177 HOH HOH . 
E 3 HOH A 95 595 181 HOH HOH . 
E 3 HOH A 96 596 183 HOH HOH . 
E 3 HOH A 97 597 185 HOH HOH . 
E 3 HOH A 98 598 186 HOH HOH . 
E 3 HOH A 99 599 187 HOH HOH . 
E 3 HOH A 100 600 188 HOH HOH . 
E 3 HOH A 101 601 189 HOH HOH . 
E 3 HOH A 102 602 190 HOH HOH . 
E 3 HOH A 103 603 191 HOH HOH . 
E 3 HOH A 104 604 192 HOH HOH . 
E 3 HOH A 105 605 193 HOH HOH . 
E 3 HOH A 106 606 194 HOH HOH . 
E 3 HOH A 107 607 196 HOH HOH . 
E 3 HOH A 108 608 197 HOH HOH . 
E 3 HOH A 109 609 198 HOH HOH . 
E 3 HOH A 110 610 199 HOH HOH . 
E 3 HOH A 111 611 200 HOH HOH . 
E 3 HOH A 112 612 201 HOH HOH . 
E 3 HOH A 113 613 202 HOH HOH . 
E 3 HOH A 114 614 208 HOH HOH . 
E 3 HOH A 115 615 209 HOH HOH . 
E 3 HOH A 116 616 212 HOH HOH . 
E 3 HOH A 117 617 215 HOH HOH . 
E 3 HOH A 118 618 218 HOH HOH . 
E 3 HOH A 119 619 220 HOH HOH . 
E 3 HOH A 120 620 222 HOH HOH . 
E 3 HOH A 121 621 224 HOH HOH . 
E 3 HOH A 122 622 225 HOH HOH . 
E 3 HOH A 123 623 228 HOH HOH . 
F 3 HOH B 1 501 6 HOH HOH . 
F 3 HOH B 2 502 8 HOH HOH . 
F 3 HOH B 3 503 9 HOH HOH . 
F 3 HOH B 4 504 11 HOH HOH . 
F 3 HOH B 5 505 12 HOH HOH . 
F 3 HOH B 6 506 13 HOH HOH . 
F 3 HOH B 7 507 14 HOH HOH . 
F 3 HOH B 8 508 16 HOH HOH . 
F 3 HOH B 9 509 17 HOH HOH . 
F 3 HOH B 10 510 21 HOH HOH . 
F 3 HOH B 11 511 22 HOH HOH . 
F 3 HOH B 12 512 24 HOH HOH . 
F 3 HOH B 13 513 25 HOH HOH . 
F 3 HOH B 14 514 26 HOH HOH . 
F 3 HOH B 15 515 27 HOH HOH . 
F 3 HOH B 16 516 28 HOH HOH . 
F 3 HOH B 17 517 31 HOH HOH . 
F 3 HOH B 18 518 32 HOH HOH . 
F 3 HOH B 19 519 34 HOH HOH . 
F 3 HOH B 20 520 36 HOH HOH . 
F 3 HOH B 21 521 38 HOH HOH . 
F 3 HOH B 22 522 39 HOH HOH . 
F 3 HOH B 23 523 44 HOH HOH . 
F 3 HOH B 24 524 45 HOH HOH . 
F 3 HOH B 25 525 46 HOH HOH . 
F 3 HOH B 26 526 50 HOH HOH . 
F 3 HOH B 27 527 51 HOH HOH . 
F 3 HOH B 28 528 52 HOH HOH . 
F 3 HOH B 29 529 53 HOH HOH . 
F 3 HOH B 30 530 54 HOH HOH . 
F 3 HOH B 31 531 55 HOH HOH . 
F 3 HOH B 32 532 56 HOH HOH . 
F 3 HOH B 33 533 57 HOH HOH . 
F 3 HOH B 34 534 58 HOH HOH . 
F 3 HOH B 35 535 59 HOH HOH . 
F 3 HOH B 36 536 62 HOH HOH . 
F 3 HOH B 37 537 63 HOH HOH . 
F 3 HOH B 38 538 66 HOH HOH . 
F 3 HOH B 39 539 69 HOH HOH . 
F 3 HOH B 40 540 72 HOH HOH . 
F 3 HOH B 41 541 73 HOH HOH . 
F 3 HOH B 42 542 74 HOH HOH . 
F 3 HOH B 43 543 80 HOH HOH . 
F 3 HOH B 44 544 82 HOH HOH . 
F 3 HOH B 45 545 84 HOH HOH . 
F 3 HOH B 46 546 85 HOH HOH . 
F 3 HOH B 47 547 93 HOH HOH . 
F 3 HOH B 48 548 102 HOH HOH . 
F 3 HOH B 49 549 107 HOH HOH . 
F 3 HOH B 50 550 112 HOH HOH . 
F 3 HOH B 51 551 113 HOH HOH . 
F 3 HOH B 52 552 116 HOH HOH . 
F 3 HOH B 53 553 118 HOH HOH . 
F 3 HOH B 54 554 119 HOH HOH . 
F 3 HOH B 55 555 122 HOH HOH . 
F 3 HOH B 56 556 123 HOH HOH . 
F 3 HOH B 57 557 125 HOH HOH . 
F 3 HOH B 58 558 126 HOH HOH . 
F 3 HOH B 59 559 134 HOH HOH . 
F 3 HOH B 60 560 136 HOH HOH . 
F 3 HOH B 61 561 139 HOH HOH . 
F 3 HOH B 62 562 143 HOH HOH . 
F 3 HOH B 63 563 145 HOH HOH . 
F 3 HOH B 64 564 146 HOH HOH . 
F 3 HOH B 65 565 147 HOH HOH . 
F 3 HOH B 66 566 148 HOH HOH . 
F 3 HOH B 67 567 149 HOH HOH . 
F 3 HOH B 68 568 151 HOH HOH . 
F 3 HOH B 69 569 152 HOH HOH . 
F 3 HOH B 70 570 155 HOH HOH . 
F 3 HOH B 71 571 157 HOH HOH . 
F 3 HOH B 72 572 159 HOH HOH . 
F 3 HOH B 73 573 160 HOH HOH . 
F 3 HOH B 74 574 161 HOH HOH . 
F 3 HOH B 75 575 163 HOH HOH . 
F 3 HOH B 76 576 164 HOH HOH . 
F 3 HOH B 77 577 167 HOH HOH . 
F 3 HOH B 78 578 168 HOH HOH . 
F 3 HOH B 79 579 169 HOH HOH . 
F 3 HOH B 80 580 170 HOH HOH . 
F 3 HOH B 81 581 172 HOH HOH . 
F 3 HOH B 82 582 174 HOH HOH . 
F 3 HOH B 83 583 176 HOH HOH . 
F 3 HOH B 84 584 178 HOH HOH . 
F 3 HOH B 85 585 179 HOH HOH . 
F 3 HOH B 86 586 180 HOH HOH . 
F 3 HOH B 87 587 182 HOH HOH . 
F 3 HOH B 88 588 184 HOH HOH . 
F 3 HOH B 89 589 195 HOH HOH . 
F 3 HOH B 90 590 203 HOH HOH . 
F 3 HOH B 91 591 204 HOH HOH . 
F 3 HOH B 92 592 205 HOH HOH . 
F 3 HOH B 93 593 206 HOH HOH . 
F 3 HOH B 94 594 207 HOH HOH . 
F 3 HOH B 95 595 210 HOH HOH . 
F 3 HOH B 96 596 211 HOH HOH . 
F 3 HOH B 97 597 213 HOH HOH . 
F 3 HOH B 98 598 214 HOH HOH . 
F 3 HOH B 99 599 216 HOH HOH . 
F 3 HOH B 100 600 217 HOH HOH . 
F 3 HOH B 101 601 219 HOH HOH . 
F 3 HOH B 102 602 221 HOH HOH . 
F 3 HOH B 103 603 223 HOH HOH . 
F 3 HOH B 104 604 226 HOH HOH . 
F 3 HOH B 105 605 227 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . C 2 8.561 -58.353 -21.985 1 28.62 ? N1 PLP 401 A 1 
HETATM 2 C C2 PLP . . . C 2 8.427 -58.144 -20.679 1 28.56 ? C2 PLP 401 A 1 
HETATM 3 C C2A PLP . . . C 2 9.627 -58.105 -19.748 1 26.94 ? C2A PLP 401 A 1 
HETATM 4 C C3 PLP . . . C 2 7.02 -58.01 -20.171 1 28.58 ? C3 PLP 401 A 1 
HETATM 5 O O3 PLP . . . C 2 6.787 -57.825 -18.869 1 27.47 ? O3 PLP 401 A 1 
HETATM 6 C C4 PLP . . . C 2 5.874 -58.083 -21.113 1 27.81 ? C4 PLP 401 A 1 
HETATM 7 C C4A PLP . . . C 2 4.488 -57.947 -20.698 1 28.1 ? C4A PLP 401 A 1 
HETATM 8 C C5 PLP . . . C 2 6.157 -58.269 -22.545 1 28.99 ? C5 PLP 401 A 1 
HETATM 9 C C6 PLP . . . C 2 7.513 -58.433 -22.891 1 29.08 ? C6 PLP 401 A 1 
HETATM 10 C C5A PLP . . . C 2 4.965 -58.295 -23.495 1 28.16 ? C5A PLP 401 A 1 
HETATM 11 O O4P PLP . . . C 2 4.342 -56.99 -23.395 1 30.34 ? O4P PLP 401 A 1 
HETATM 12 P P PLP . . . C 2 2.841 -56.694 -23.969 1 29.53 ? P PLP 401 A 1 
HETATM 13 O O1P PLP . . . C 2 2.644 -57.725 -25.067 1 30.6 ? O1P PLP 401 A 1 
HETATM 14 O O2P PLP . . . C 2 2.8 -55.291 -24.427 1 31.47 ? O2P PLP 401 A 1 
HETATM 15 O O3P PLP . . . C 2 2.099 -57.069 -22.781 1 30.04 ? O3P PLP 401 A 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#