data_3WQJ # _model_server_result.job_id 7YEev83E227S7sMKMef42A _model_server_result.datetime_utc '2024-11-27 22:24:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wqj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 3WQJ # _exptl.entry_id 3WQJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3WQJ _cell.length_a 62.739 _cell.length_b 62.739 _cell.length_c 331.464 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WQJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 31.3695 54.333568 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -31.3695 54.333568 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 227 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 221 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.456 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 806 n n C1 C6 RET sing 807 n n C1 C16 RET sing 808 n n C1 C17 RET sing 809 n n C2 C3 RET sing 810 n n C2 H21 RET sing 811 n n C2 H22 RET sing 812 n n C3 C4 RET sing 813 n n C3 H31 RET sing 814 n n C3 H32 RET sing 815 n n C4 C5 RET sing 816 n n C4 H41 RET sing 817 n n C4 H42 RET sing 818 n n C5 C6 RET doub 819 n n C5 C18 RET sing 820 n n C6 C7 RET sing 821 n n C7 C8 RET doub 822 e n C7 H7 RET sing 823 n n C8 C9 RET sing 824 n n C8 H8 RET sing 825 n n C9 C10 RET doub 826 e n C9 C19 RET sing 827 n n C10 C11 RET sing 828 n n C10 H10 RET sing 829 n n C11 C12 RET doub 830 e n C11 H11 RET sing 831 n n C12 C13 RET sing 832 n n C12 H12 RET sing 833 n n C13 C14 RET doub 834 e n C13 C20 RET sing 835 n n C14 C15 RET sing 836 n n C14 H14 RET sing 837 n n C15 O1 RET doub 838 n n C15 H15 RET sing 839 n n C16 H161 RET sing 840 n n C16 H162 RET sing 841 n n C16 H163 RET sing 842 n n C17 H171 RET sing 843 n n C17 H172 RET sing 844 n n C17 H173 RET sing 845 n n C18 H181 RET sing 846 n n C18 H182 RET sing 847 n n C18 H183 RET sing 848 n n C19 H191 RET sing 849 n n C19 H192 RET sing 850 n n C19 H193 RET sing 851 n n C20 H201 RET sing 852 n n C20 H202 RET sing 853 n n C20 H203 RET sing 854 n n # _atom_sites.entry_id 3WQJ _atom_sites.fract_transf_matrix[1][1] 0.015939 _atom_sites.fract_transf_matrix[1][2] 0.009202 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018405 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003017 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 260 RET RET . C 3 22B A 1 302 270 22B 22B . D 4 SO4 A 1 303 300 SO4 SO4 . E 5 L2P A 1 304 280 L2P L2P . F 6 L3P A 1 305 281 L3P L3P . G 7 L4P A 1 306 290 L4P L4P . H 7 L4P A 1 307 291 L4P L4P . I 8 SQL A 1 308 380 SQL SQU . J 9 HOH A 1 401 401 HOH HOH . J 9 HOH A 2 402 402 HOH HOH . J 9 HOH A 3 403 403 HOH HOH . J 9 HOH A 4 404 404 HOH HOH . J 9 HOH A 5 405 405 HOH HOH . J 9 HOH A 6 406 406 HOH HOH . J 9 HOH A 7 407 407 HOH HOH . J 9 HOH A 8 408 408 HOH HOH . J 9 HOH A 9 409 409 HOH HOH . J 9 HOH A 10 410 410 HOH HOH . J 9 HOH A 11 411 411 HOH HOH . J 9 HOH A 12 412 412 HOH HOH . J 9 HOH A 13 413 413 HOH HOH . J 9 HOH A 14 414 414 HOH HOH . J 9 HOH A 15 415 415 HOH HOH . J 9 HOH A 16 416 416 HOH HOH . J 9 HOH A 17 417 417 HOH HOH . J 9 HOH A 18 418 419 HOH HOH . J 9 HOH A 19 419 420 HOH HOH . J 9 HOH A 20 420 421 HOH HOH . J 9 HOH A 21 421 422 HOH HOH . J 9 HOH A 22 422 423 HOH HOH . J 9 HOH A 23 423 424 HOH HOH . J 9 HOH A 24 424 425 HOH HOH . J 9 HOH A 25 425 426 HOH HOH . J 9 HOH A 26 426 427 HOH HOH . J 9 HOH A 27 427 428 HOH HOH . J 9 HOH A 28 428 429 HOH HOH . J 9 HOH A 29 429 430 HOH HOH . J 9 HOH A 30 430 431 HOH HOH . J 9 HOH A 31 431 432 HOH HOH . J 9 HOH A 32 432 433 HOH HOH . J 9 HOH A 33 433 434 HOH HOH . J 9 HOH A 34 434 435 HOH HOH . J 9 HOH A 35 435 436 HOH HOH . J 9 HOH A 36 436 437 HOH HOH . J 9 HOH A 37 437 441 HOH HOH . J 9 HOH A 38 438 442 HOH HOH . J 9 HOH A 39 439 443 HOH HOH . J 9 HOH A 40 440 444 HOH HOH . J 9 HOH A 41 441 445 HOH HOH . J 9 HOH A 42 442 446 HOH HOH . J 9 HOH A 43 443 447 HOH HOH . J 9 HOH A 44 444 448 HOH HOH . J 9 HOH A 45 445 449 HOH HOH . J 9 HOH A 46 446 450 HOH HOH . J 9 HOH A 47 447 451 HOH HOH . J 9 HOH A 48 448 452 HOH HOH . J 9 HOH A 49 449 453 HOH HOH . J 9 HOH A 50 450 454 HOH HOH . J 9 HOH A 51 451 456 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . B 2 0.373 18.098 33.791 1 18.82 ? C1 RET 301 A 1 HETATM 2 C C2 RET . . . B 2 -0.091 17.451 35.074 1 20.21 ? C2 RET 301 A 1 HETATM 3 C C3 RET . . . B 2 -1.592 17.397 34.811 1 17.78 ? C3 RET 301 A 1 HETATM 4 C C4 RET . . . B 2 -1.937 16.509 33.62 1 16.78 ? C4 RET 301 A 1 HETATM 5 C C5 RET . . . B 2 -0.95 16.637 32.458 1 17.34 ? C5 RET 301 A 1 HETATM 6 C C6 RET . . . B 2 0.219 17.306 32.512 1 15.51 ? C6 RET 301 A 1 HETATM 7 C C7 RET . . . B 2 1.153 17.386 31.339 1 13.91 ? C7 RET 301 A 1 HETATM 8 C C8 RET . . . B 2 2.267 18.126 31.21 1 15.34 ? C8 RET 301 A 1 HETATM 9 C C9 RET . . . B 2 3.143 18.076 30.008 1 18.09 ? C9 RET 301 A 1 HETATM 10 C C10 RET . . . B 2 4.363 18.665 30.135 1 17.41 ? C10 RET 301 A 1 HETATM 11 C C11 RET . . . B 2 5.401 18.699 29.096 1 16.39 ? C11 RET 301 A 1 HETATM 12 C C12 RET . . . B 2 6.479 19.439 29.378 1 15.16 ? C12 RET 301 A 1 HETATM 13 C C13 RET . . . B 2 7.584 19.682 28.447 1 15.72 ? C13 RET 301 A 1 HETATM 14 C C14 RET . . . B 2 8.472 20.573 28.935 1 18.46 ? C14 RET 301 A 1 HETATM 15 C C15 RET . . . B 2 9.648 21.094 28.29 1 13.34 ? C15 RET 301 A 1 HETATM 16 C C16 RET . . . B 2 0.821 19.52 33.625 1 17.97 ? C16 RET 301 A 1 HETATM 17 C C17 RET . . . B 2 1.784 17.612 34.207 1 17.29 ? C17 RET 301 A 1 HETATM 18 C C18 RET . . . B 2 -1.401 15.876 31.244 1 16.32 ? C18 RET 301 A 1 HETATM 19 C C19 RET . . . B 2 2.695 17.321 28.761 1 15.71 ? C19 RET 301 A 1 HETATM 20 C C20 RET . . . B 2 7.621 19.083 27.069 1 13.66 ? C20 RET 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 367 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #