data_3WQJ # _model_server_result.job_id wu_SlApHqiFV3ppYz5-kdw _model_server_result.datetime_utc '2024-11-02 13:39:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wqj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 3WQJ # _exptl.entry_id 3WQJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 741.136 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BACTERIORUBERIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3WQJ _cell.length_a 62.739 _cell.length_b 62.739 _cell.length_c 331.464 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WQJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 31.3695 54.333568 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -31.3695 54.333568 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 227 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 221 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.456 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C50 H76 O4' _chem_comp.formula_weight 741.136 _chem_comp.id 22B _chem_comp.mon_nstd_flag . _chem_comp.name BACTERIORUBERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 22B sing 1 n n C1 C16 22B sing 2 n n C1 C17 22B sing 3 n n C1 O26 22B sing 4 n n C2 C3 22B sing 5 n n C2 C21 22B sing 6 n n C2 H2 22B sing 7 n n C3 C4 22B doub 8 n n C3 H3 22B sing 9 n n C4 C5 22B sing 10 n n C4 H4 22B sing 11 n n C5 C6 22B doub 12 n n C5 C18 22B sing 13 n n C6 C7 22B sing 14 n n C6 H6 22B sing 15 n n C7 C8 22B doub 16 n n C7 H7 22B sing 17 n n C8 C9 22B sing 18 n n C8 H8 22B sing 19 n n C9 C10 22B doub 20 n n C9 C19 22B sing 21 n n C10 C11 22B sing 22 n n C10 H10 22B sing 23 n n C11 C12 22B doub 24 n n C11 H11 22B sing 25 n n C12 C13 22B sing 26 n n C12 H12 22B sing 27 n n C13 C14 22B doub 28 n n C13 C20 22B sing 29 n n C14 C15 22B sing 30 n n C14 H14 22B sing 31 n n C15 C45 22B doub 32 n n C15 H15 22B sing 33 n n C16 H161 22B sing 34 n n C16 H162 22B sing 35 n n C16 H163 22B sing 36 n n C17 H171 22B sing 37 n n C17 H172 22B sing 38 n n C17 H173 22B sing 39 n n C18 H181 22B sing 40 n n C18 H182 22B sing 41 n n C18 H183 22B sing 42 n n C19 H191 22B sing 43 n n C19 H192 22B sing 44 n n C19 H193 22B sing 45 n n C20 H201 22B sing 46 n n C20 H202 22B sing 47 n n C20 H203 22B sing 48 n n C21 C22 22B sing 49 n n C21 H211 22B sing 50 n n C21 H212 22B sing 51 n n C22 C23 22B sing 52 n n C22 H221 22B sing 53 n n C22 H222 22B sing 54 n n C23 C24 22B sing 55 n n C23 C25 22B sing 56 n n C23 O27 22B sing 57 n n C24 H241 22B sing 58 n n C24 H242 22B sing 59 n n C24 H243 22B sing 60 n n C25 H251 22B sing 61 n n C25 H252 22B sing 62 n n C25 H253 22B sing 63 n n O26 H26 22B sing 64 n n O27 H27 22B sing 65 n n C38 C39 22B sing 66 n n C38 C27 22B doub 67 n n C38 H38 22B sing 68 n n C39 C40 22B doub 69 n n C39 C26 22B sing 70 n n C40 C41 22B sing 71 n n C40 H40 22B sing 72 n n C41 C42 22B doub 73 n n C41 H41 22B sing 74 n n C42 C43 22B sing 75 n n C42 H42 22B sing 76 n n C43 C50 22B sing 77 n n C43 C44 22B doub 78 n n C44 C45 22B sing 79 n n C44 H44 22B sing 80 n n C45 H45 22B sing 81 n n C50 H501 22B sing 82 n n C50 H502 22B sing 83 n n C50 H503 22B sing 84 n n C26 H261 22B sing 85 n n C26 H262 22B sing 86 n n C26 H263 22B sing 87 n n C27 C28 22B sing 88 n n C27 H1 22B sing 89 n n C28 C29 22B doub 90 n n C28 H28 22B sing 91 n n C29 C30 22B sing 92 n n C29 C31 22B sing 93 n n C30 H301 22B sing 94 n n C30 H302 22B sing 95 n n C30 H303 22B sing 96 n n C31 C32 22B doub 97 n n C31 H31 22B sing 98 n n C32 C33 22B sing 99 n n C32 H32 22B sing 100 n n C33 C34 22B sing 101 n n C33 C47 22B sing 102 n n C33 H33 22B sing 103 n n C34 C35 22B sing 104 n n C34 H341 22B sing 105 n n C34 H342 22B sing 106 n n C35 C36 22B sing 107 n n C35 H351 22B sing 108 n n C35 H352 22B sing 109 n n C36 C37 22B sing 110 n n C36 C46 22B sing 111 n n C36 O1 22B sing 112 n n C37 H371 22B sing 113 n n C37 H372 22B sing 114 n n C37 H373 22B sing 115 n n C46 H461 22B sing 116 n n C46 H462 22B sing 117 n n C46 H463 22B sing 118 n n O1 HO1 22B sing 119 n n C47 C48 22B sing 120 n n C47 C49 22B sing 121 n n C47 O2 22B sing 122 n n C48 H481 22B sing 123 n n C48 H482 22B sing 124 n n C48 H483 22B sing 125 n n C49 H491 22B sing 126 n n C49 H492 22B sing 127 n n C49 H493 22B sing 128 n n O2 HO2 22B sing 129 n n # _atom_sites.entry_id 3WQJ _atom_sites.fract_transf_matrix[1][1] 0.015939 _atom_sites.fract_transf_matrix[1][2] 0.009202 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018405 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003017 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 260 RET RET . C 3 22B A 1 302 270 22B 22B . D 4 SO4 A 1 303 300 SO4 SO4 . E 5 L2P A 1 304 280 L2P L2P . F 6 L3P A 1 305 281 L3P L3P . G 7 L4P A 1 306 290 L4P L4P . H 7 L4P A 1 307 291 L4P L4P . I 8 SQL A 1 308 380 SQL SQU . J 9 HOH A 1 401 401 HOH HOH . J 9 HOH A 2 402 402 HOH HOH . J 9 HOH A 3 403 403 HOH HOH . J 9 HOH A 4 404 404 HOH HOH . J 9 HOH A 5 405 405 HOH HOH . J 9 HOH A 6 406 406 HOH HOH . J 9 HOH A 7 407 407 HOH HOH . J 9 HOH A 8 408 408 HOH HOH . J 9 HOH A 9 409 409 HOH HOH . J 9 HOH A 10 410 410 HOH HOH . J 9 HOH A 11 411 411 HOH HOH . J 9 HOH A 12 412 412 HOH HOH . J 9 HOH A 13 413 413 HOH HOH . J 9 HOH A 14 414 414 HOH HOH . J 9 HOH A 15 415 415 HOH HOH . J 9 HOH A 16 416 416 HOH HOH . J 9 HOH A 17 417 417 HOH HOH . J 9 HOH A 18 418 419 HOH HOH . J 9 HOH A 19 419 420 HOH HOH . J 9 HOH A 20 420 421 HOH HOH . J 9 HOH A 21 421 422 HOH HOH . J 9 HOH A 22 422 423 HOH HOH . J 9 HOH A 23 423 424 HOH HOH . J 9 HOH A 24 424 425 HOH HOH . J 9 HOH A 25 425 426 HOH HOH . J 9 HOH A 26 426 427 HOH HOH . J 9 HOH A 27 427 428 HOH HOH . J 9 HOH A 28 428 429 HOH HOH . J 9 HOH A 29 429 430 HOH HOH . J 9 HOH A 30 430 431 HOH HOH . J 9 HOH A 31 431 432 HOH HOH . J 9 HOH A 32 432 433 HOH HOH . J 9 HOH A 33 433 434 HOH HOH . J 9 HOH A 34 434 435 HOH HOH . J 9 HOH A 35 435 436 HOH HOH . J 9 HOH A 36 436 437 HOH HOH . J 9 HOH A 37 437 441 HOH HOH . J 9 HOH A 38 438 442 HOH HOH . J 9 HOH A 39 439 443 HOH HOH . J 9 HOH A 40 440 444 HOH HOH . J 9 HOH A 41 441 445 HOH HOH . J 9 HOH A 42 442 446 HOH HOH . J 9 HOH A 43 443 447 HOH HOH . J 9 HOH A 44 444 448 HOH HOH . J 9 HOH A 45 445 449 HOH HOH . J 9 HOH A 46 446 450 HOH HOH . J 9 HOH A 47 447 451 HOH HOH . J 9 HOH A 48 448 452 HOH HOH . J 9 HOH A 49 449 453 HOH HOH . J 9 HOH A 50 450 454 HOH HOH . J 9 HOH A 51 451 456 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 22B . . . C 3 19.558 32.625 14.334 1 49.54 ? C1 22B 302 A 1 HETATM 2 C C2 22B . . . C 3 18.653 33.855 14.479 1 51.41 ? C2 22B 302 A 1 HETATM 3 C C3 22B . . . C 3 17.845 33.779 15.779 1 52.19 ? C3 22B 302 A 1 HETATM 4 C C4 22B . . . C 3 18.521 33.818 16.931 1 52.41 ? C4 22B 302 A 1 HETATM 5 C C5 22B . . . C 3 17.94 33.757 18.291 1 52.84 ? C5 22B 302 A 1 HETATM 6 C C6 22B . . . C 3 18.656 34.282 19.291 1 52.03 ? C6 22B 302 A 1 HETATM 7 C C7 22B . . . C 3 18.138 34.228 20.652 1 52.47 ? C7 22B 302 A 1 HETATM 8 C C8 22B . . . C 3 18.958 34.469 21.666 1 51.97 ? C8 22B 302 A 1 HETATM 9 C C9 22B . . . C 3 18.491 34.383 23.058 1 53.29 ? C9 22B 302 A 1 HETATM 10 C C10 22B . . . C 3 19.327 34.807 24.01 1 54.75 ? C10 22B 302 A 1 HETATM 11 C C11 22B . . . C 3 19.04 34.782 25.435 1 56.76 ? C11 22B 302 A 1 HETATM 12 C C12 22B . . . C 3 20.111 34.843 26.209 1 61.1 ? C12 22B 302 A 1 HETATM 13 C C13 22B . . . C 3 20.067 34.839 27.678 1 62.91 ? C13 22B 302 A 1 HETATM 14 C C14 22B . . . C 3 21.007 34.139 28.347 1 64.8 ? C14 22B 302 A 1 HETATM 15 C C15 22B . . . C 3 21.126 34.037 29.851 1 64.92 ? C15 22B 302 A 1 HETATM 16 C C16 22B . . . C 3 19.247 31.778 13.111 1 47.95 ? C16 22B 302 A 1 HETATM 17 C C17 22B . . . C 3 21.011 33.096 14.29 1 50.14 ? C17 22B 302 A 1 HETATM 18 C C18 22B . . . C 3 16.593 33.15 18.586 1 53.81 ? C18 22B 302 A 1 HETATM 19 C C19 22B . . . C 3 17.143 33.787 23.386 1 53.12 ? C19 22B 302 A 1 HETATM 20 C C20 22B . . . C 3 19.005 35.643 28.357 1 63.81 ? C20 22B 302 A 1 HETATM 21 C C21 22B . . . C 3 17.738 34.088 13.27 1 52.38 ? C21 22B 302 A 1 HETATM 22 C C22 22B . . . C 3 18.162 35.269 12.395 1 51.48 ? C22 22B 302 A 1 HETATM 23 C C23 22B . . . C 3 17.182 36.455 12.424 1 52.18 ? C23 22B 302 A 1 HETATM 24 C C24 22B . . . C 3 16.536 36.625 13.801 1 52.44 ? C24 22B 302 A 1 HETATM 25 C C25 22B . . . C 3 16.113 36.312 11.339 1 51.25 ? C25 22B 302 A 1 HETATM 26 O O26 22B . . . C 3 19.371 31.791 15.494 1 48.12 ? O26 22B 302 A 1 HETATM 27 O O27 22B . . . C 3 17.913 37.658 12.165 1 51.45 ? O27 22B 302 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #