data_3WQJ # _model_server_result.job_id cn23WyNJTVjTH_Uv6OrFGw _model_server_result.datetime_utc '2024-11-24 05:59:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3wqj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 3WQJ # _exptl.entry_id 3WQJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 653.157 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DI-PHYTANYL-GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3WQJ _cell.length_a 62.739 _cell.length_b 62.739 _cell.length_c 331.464 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3WQJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 31.3695 54.333568 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -31.3695 54.333568 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 227 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 221 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.456 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C43 H88 O3' _chem_comp.formula_weight 653.157 _chem_comp.id L2P _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DI-PHYTANYL-GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,2-DI-1-(3,7,11,15-TETRAMETHYL-HEXADECANE)-SN-GLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 L2P sing 268 n n C1 C2 L2P sing 269 n n C1 H12 L2P sing 270 n n C1 H11 L2P sing 271 n n O1 C11 L2P sing 272 n n C2 O2 L2P sing 273 n n C2 C3 L2P sing 274 n n C2 H2 L2P sing 275 n n O2 C41 L2P sing 276 n n C3 O3 L2P sing 277 n n C3 H32 L2P sing 278 n n C3 H31 L2P sing 279 n n O3 H3O L2P sing 280 n n C11 C12 L2P sing 281 n n C11 H112 L2P sing 282 n n C11 H111 L2P sing 283 n n C12 C13 L2P sing 284 n n C12 H122 L2P sing 285 n n C12 H121 L2P sing 286 n n C13 C14 L2P sing 287 n n C13 C15 L2P sing 288 n n C13 H13 L2P sing 289 n n C14 H143 L2P sing 290 n n C14 H142 L2P sing 291 n n C14 H141 L2P sing 292 n n C15 C16 L2P sing 293 n n C15 H152 L2P sing 294 n n C15 H151 L2P sing 295 n n C16 C17 L2P sing 296 n n C16 H162 L2P sing 297 n n C16 H161 L2P sing 298 n n C17 C18 L2P sing 299 n n C17 H172 L2P sing 300 n n C17 H171 L2P sing 301 n n C18 C19 L2P sing 302 n n C18 C20 L2P sing 303 n n C18 H18 L2P sing 304 n n C19 H193 L2P sing 305 n n C19 H192 L2P sing 306 n n C19 H191 L2P sing 307 n n C20 C21 L2P sing 308 n n C20 H202 L2P sing 309 n n C20 H201 L2P sing 310 n n C21 C22 L2P sing 311 n n C21 H212 L2P sing 312 n n C21 H211 L2P sing 313 n n C22 C23 L2P sing 314 n n C22 H222 L2P sing 315 n n C22 H221 L2P sing 316 n n C23 C24 L2P sing 317 n n C23 C25 L2P sing 318 n n C23 H23 L2P sing 319 n n C24 H243 L2P sing 320 n n C24 H242 L2P sing 321 n n C24 H241 L2P sing 322 n n C25 C26 L2P sing 323 n n C25 H252 L2P sing 324 n n C25 H251 L2P sing 325 n n C26 C27 L2P sing 326 n n C26 H262 L2P sing 327 n n C26 H261 L2P sing 328 n n C27 C28 L2P sing 329 n n C27 H272 L2P sing 330 n n C27 H271 L2P sing 331 n n C28 C29 L2P sing 332 n n C28 C30 L2P sing 333 n n C28 H28 L2P sing 334 n n C29 H293 L2P sing 335 n n C29 H292 L2P sing 336 n n C29 H291 L2P sing 337 n n C30 H303 L2P sing 338 n n C30 H302 L2P sing 339 n n C30 H301 L2P sing 340 n n C41 C42 L2P sing 341 n n C41 H412 L2P sing 342 n n C41 H411 L2P sing 343 n n C42 C43 L2P sing 344 n n C42 H422 L2P sing 345 n n C42 H421 L2P sing 346 n n C43 C44 L2P sing 347 n n C43 C45 L2P sing 348 n n C43 H43 L2P sing 349 n n C44 H443 L2P sing 350 n n C44 H442 L2P sing 351 n n C44 H441 L2P sing 352 n n C45 C46 L2P sing 353 n n C45 H452 L2P sing 354 n n C45 H451 L2P sing 355 n n C46 C47 L2P sing 356 n n C46 H462 L2P sing 357 n n C46 H461 L2P sing 358 n n C47 C48 L2P sing 359 n n C47 H472 L2P sing 360 n n C47 H471 L2P sing 361 n n C48 C49 L2P sing 362 n n C48 C50 L2P sing 363 n n C48 H48 L2P sing 364 n n C49 H493 L2P sing 365 n n C49 H492 L2P sing 366 n n C49 H491 L2P sing 367 n n C50 C51 L2P sing 368 n n C50 H502 L2P sing 369 n n C50 H501 L2P sing 370 n n C51 C52 L2P sing 371 n n C51 H512 L2P sing 372 n n C51 H511 L2P sing 373 n n C52 C53 L2P sing 374 n n C52 H522 L2P sing 375 n n C52 H521 L2P sing 376 n n C53 C54 L2P sing 377 n n C53 C55 L2P sing 378 n n C53 H53 L2P sing 379 n n C54 H543 L2P sing 380 n n C54 H542 L2P sing 381 n n C54 H541 L2P sing 382 n n C55 C56 L2P sing 383 n n C55 H552 L2P sing 384 n n C55 H551 L2P sing 385 n n C56 C57 L2P sing 386 n n C56 H562 L2P sing 387 n n C56 H561 L2P sing 388 n n C57 C58 L2P sing 389 n n C57 H572 L2P sing 390 n n C57 H571 L2P sing 391 n n C58 C59 L2P sing 392 n n C58 C60 L2P sing 393 n n C58 H58 L2P sing 394 n n C59 H593 L2P sing 395 n n C59 H592 L2P sing 396 n n C59 H591 L2P sing 397 n n C60 H603 L2P sing 398 n n C60 H602 L2P sing 399 n n C60 H601 L2P sing 400 n n # _atom_sites.entry_id 3WQJ _atom_sites.fract_transf_matrix[1][1] 0.015939 _atom_sites.fract_transf_matrix[1][2] 0.009202 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018405 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003017 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 260 RET RET . C 3 22B A 1 302 270 22B 22B . D 4 SO4 A 1 303 300 SO4 SO4 . E 5 L2P A 1 304 280 L2P L2P . F 6 L3P A 1 305 281 L3P L3P . G 7 L4P A 1 306 290 L4P L4P . H 7 L4P A 1 307 291 L4P L4P . I 8 SQL A 1 308 380 SQL SQU . J 9 HOH A 1 401 401 HOH HOH . J 9 HOH A 2 402 402 HOH HOH . J 9 HOH A 3 403 403 HOH HOH . J 9 HOH A 4 404 404 HOH HOH . J 9 HOH A 5 405 405 HOH HOH . J 9 HOH A 6 406 406 HOH HOH . J 9 HOH A 7 407 407 HOH HOH . J 9 HOH A 8 408 408 HOH HOH . J 9 HOH A 9 409 409 HOH HOH . J 9 HOH A 10 410 410 HOH HOH . J 9 HOH A 11 411 411 HOH HOH . J 9 HOH A 12 412 412 HOH HOH . J 9 HOH A 13 413 413 HOH HOH . J 9 HOH A 14 414 414 HOH HOH . J 9 HOH A 15 415 415 HOH HOH . J 9 HOH A 16 416 416 HOH HOH . J 9 HOH A 17 417 417 HOH HOH . J 9 HOH A 18 418 419 HOH HOH . J 9 HOH A 19 419 420 HOH HOH . J 9 HOH A 20 420 421 HOH HOH . J 9 HOH A 21 421 422 HOH HOH . J 9 HOH A 22 422 423 HOH HOH . J 9 HOH A 23 423 424 HOH HOH . J 9 HOH A 24 424 425 HOH HOH . J 9 HOH A 25 425 426 HOH HOH . J 9 HOH A 26 426 427 HOH HOH . J 9 HOH A 27 427 428 HOH HOH . J 9 HOH A 28 428 429 HOH HOH . J 9 HOH A 29 429 430 HOH HOH . J 9 HOH A 30 430 431 HOH HOH . J 9 HOH A 31 431 432 HOH HOH . J 9 HOH A 32 432 433 HOH HOH . J 9 HOH A 33 433 434 HOH HOH . J 9 HOH A 34 434 435 HOH HOH . J 9 HOH A 35 435 436 HOH HOH . J 9 HOH A 36 436 437 HOH HOH . J 9 HOH A 37 437 441 HOH HOH . J 9 HOH A 38 438 442 HOH HOH . J 9 HOH A 39 439 443 HOH HOH . J 9 HOH A 40 440 444 HOH HOH . J 9 HOH A 41 441 445 HOH HOH . J 9 HOH A 42 442 446 HOH HOH . J 9 HOH A 43 443 447 HOH HOH . J 9 HOH A 44 444 448 HOH HOH . J 9 HOH A 45 445 449 HOH HOH . J 9 HOH A 46 446 450 HOH HOH . J 9 HOH A 47 447 451 HOH HOH . J 9 HOH A 48 448 452 HOH HOH . J 9 HOH A 49 449 453 HOH HOH . J 9 HOH A 50 450 454 HOH HOH . J 9 HOH A 51 451 456 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 L2P . . . E 5 5.111 34.162 45.29 1 61.57 ? C1 L2P 304 A 1 HETATM 2 O O1 L2P . . . E 5 4.336 33.543 44.248 1 61.15 ? O1 L2P 304 A 1 HETATM 3 C C2 L2P . . . E 5 5.747 35.491 44.819 1 61.18 ? C2 L2P 304 A 1 HETATM 4 O O2 L2P . . . E 5 6.239 35.371 43.475 1 60.25 ? O2 L2P 304 A 1 HETATM 5 C C3 L2P . . . E 5 6.957 35.905 45.68 1 61.18 ? C3 L2P 304 A 1 HETATM 6 O O3 L2P . . . E 5 6.759 35.796 47.1 1 62.91 ? O3 L2P 304 A 1 HETATM 7 C C11 L2P . . . E 5 3.546 32.402 44.63 1 60.52 ? C11 L2P 304 A 1 HETATM 8 C C12 L2P . . . E 5 2.068 32.655 44.295 1 59.79 ? C12 L2P 304 A 1 HETATM 9 C C13 L2P . . . E 5 1.318 31.717 43.331 1 59.12 ? C13 L2P 304 A 1 HETATM 10 C C14 L2P . . . E 5 0.783 30.482 44.055 1 58.93 ? C14 L2P 304 A 1 HETATM 11 C C15 L2P . . . E 5 2.093 31.352 42.058 1 59.64 ? C15 L2P 304 A 1 HETATM 12 C C16 L2P . . . E 5 1.296 31.623 40.78 1 58.43 ? C16 L2P 304 A 1 HETATM 13 C C17 L2P . . . E 5 2.188 32.105 39.627 1 59.56 ? C17 L2P 304 A 1 HETATM 14 C C18 L2P . . . E 5 1.751 31.51 38.29 1 59.72 ? C18 L2P 304 A 1 HETATM 15 C C19 L2P . . . E 5 2.004 30.013 38.281 1 60.74 ? C19 L2P 304 A 1 HETATM 16 C C20 L2P . . . E 5 2.478 32.125 37.106 1 60.08 ? C20 L2P 304 A 1 HETATM 17 C C21 L2P . . . E 5 1.633 31.951 35.847 1 61.96 ? C21 L2P 304 A 1 HETATM 18 C C22 L2P . . . E 5 2.476 31.502 34.662 1 63.32 ? C22 L2P 304 A 1 HETATM 19 C C23 L2P . . . E 5 2.523 32.525 33.521 1 64.6 ? C23 L2P 304 A 1 HETATM 20 C C24 L2P . . . E 5 2.409 31.808 32.177 1 65.47 ? C24 L2P 304 A 1 HETATM 21 C C25 L2P . . . E 5 3.804 33.367 33.601 1 64.88 ? C25 L2P 304 A 1 HETATM 22 C C26 L2P . . . E 5 3.809 34.552 32.631 1 63.2 ? C26 L2P 304 A 1 HETATM 23 C C27 L2P . . . E 5 5.02 35.445 32.849 1 62.38 ? C27 L2P 304 A 1 HETATM 24 C C28 L2P . . . E 5 4.738 36.467 33.95 1 61.96 ? C28 L2P 304 A 1 HETATM 25 C C29 L2P . . . E 5 5.659 36.249 35.141 1 62.54 ? C29 L2P 304 A 1 HETATM 26 C C30 L2P . . . E 5 4.868 37.889 33.431 1 61.81 ? C30 L2P 304 A 1 HETATM 27 C C41 L2P . . . E 5 5.413 35.817 42.391 1 54.94 ? C41 L2P 304 A 1 HETATM 28 C C42 L2P . . . E 5 6.113 35.358 41.102 1 53.75 ? C42 L2P 304 A 1 HETATM 29 C C43 L2P . . . E 5 5.501 35.909 39.807 1 50.4 ? C43 L2P 304 A 1 HETATM 30 C C44 L2P . . . E 5 4.029 35.533 39.705 1 50.69 ? C44 L2P 304 A 1 HETATM 31 C C45 L2P . . . E 5 6.206 35.512 38.494 1 47.09 ? C45 L2P 304 A 1 HETATM 32 C C46 L2P . . . E 5 7.366 34.493 38.466 1 41.17 ? C46 L2P 304 A 1 HETATM 33 C C47 L2P . . . E 5 7.062 33.224 37.645 1 36.05 ? C47 L2P 304 A 1 HETATM 34 C C48 L2P . . . E 5 8.27 32.316 37.28 1 34.8 ? C48 L2P 304 A 1 HETATM 35 C C49 L2P . . . E 5 9.355 32.334 38.353 1 30.4 ? C49 L2P 304 A 1 HETATM 36 C C50 L2P . . . E 5 8.822 32.708 35.903 1 34.35 ? C50 L2P 304 A 1 HETATM 37 C C51 L2P . . . E 5 9.788 31.73 35.211 1 36.68 ? C51 L2P 304 A 1 HETATM 38 C C52 L2P . . . E 5 9.361 31.429 33.752 1 42.43 ? C52 L2P 304 A 1 HETATM 39 C C53 L2P . . . E 5 10.073 32.19 32.65 1 42.43 ? C53 L2P 304 A 1 HETATM 40 C C54 L2P . . . E 5 10.951 33.273 33.248 1 47.82 ? C54 L2P 304 A 1 HETATM 41 C C55 L2P . . . E 5 9.05 32.692 31.63 1 41.87 ? C55 L2P 304 A 1 HETATM 42 C C56 L2P . . . E 5 9.548 33.796 30.724 1 39.43 ? C56 L2P 304 A 1 HETATM 43 C C57 L2P . . . E 5 9.343 33.547 29.241 1 37.63 ? C57 L2P 304 A 1 HETATM 44 C C58 L2P . . . E 5 9.027 34.807 28.455 1 34.34 ? C58 L2P 304 A 1 HETATM 45 C C59 L2P . . . E 5 9.529 34.731 27.017 1 30.43 ? C59 L2P 304 A 1 HETATM 46 C C60 L2P . . . E 5 7.54 35.151 28.502 1 31.89 ? C60 L2P 304 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 46 #